Wall clock time and date at job start Mon Mar 30 2020 01:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 N 1.46907 * 109.47040 * 240.00527 * 2 1 3 5 5 C 1.46896 * 110.99858 * 192.81243 * 4 2 1 6 6 C 1.50707 * 109.47294 * 66.04399 * 5 4 2 7 7 C 1.38228 * 119.99983 * 269.72739 * 6 5 4 8 8 C 1.38241 * 119.99828 * 179.76526 * 7 6 5 9 9 C 1.38233 * 119.99589 * 0.50449 * 8 7 6 10 10 C 1.38233 * 120.00287 * 359.74864 * 9 8 7 11 11 C 1.38233 * 119.99572 * 89.99717 * 6 5 4 12 12 C 1.46901 * 110.99839 * 68.85776 * 4 2 1 13 13 H 1.08998 * 109.47082 * 326.24511 * 12 4 2 14 14 C 1.53004 * 109.46846 * 86.24608 * 12 4 2 15 15 C 1.52998 * 109.46847 * 206.24218 * 12 4 2 16 16 C 1.53007 * 109.47240 * 63.97039 * 15 12 4 17 17 C 1.50701 * 109.47330 * 184.89617 * 16 15 12 18 18 H 1.07997 * 119.99600 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00155 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47083 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46950 * 120.00412 * 21 19 17 24 24 H 1.48496 * 109.47237 * 239.99849 * 21 19 17 25 25 H 1.08999 * 109.47533 * 54.78883 * 1 2 3 26 26 H 1.09001 * 109.47278 * 174.78828 * 1 2 3 27 27 H 1.09004 * 109.47200 * 294.78642 * 1 2 3 28 28 H 1.08997 * 109.47444 * 120.00405 * 2 1 3 29 29 H 1.08999 * 109.46814 * 64.75141 * 3 2 1 30 30 H 1.09001 * 109.47325 * 184.74536 * 3 2 1 31 31 H 1.08993 * 109.47651 * 304.75191 * 3 2 1 32 32 H 1.08998 * 109.47354 * 186.04847 * 5 4 2 33 33 H 1.09007 * 109.47225 * 306.04626 * 5 4 2 34 34 H 1.07998 * 120.00222 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.99681 * 180.23249 * 8 7 6 36 36 H 1.08008 * 119.99301 * 179.72775 * 9 8 7 37 37 H 1.08005 * 119.99951 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.00474 * 0.02562 * 11 6 5 39 39 H 1.08997 * 109.47212 * 299.99352 * 14 12 4 40 40 H 1.08998 * 109.47359 * 60.00073 * 14 12 4 41 41 H 1.08997 * 109.46612 * 179.97438 * 14 12 4 42 42 H 1.08996 * 109.47287 * 183.97326 * 15 12 4 43 43 H 1.08998 * 109.47446 * 303.97335 * 15 12 4 44 44 H 1.08998 * 109.46556 * 304.89944 * 16 15 12 45 45 H 1.08996 * 109.46723 * 64.89486 * 16 15 12 46 46 H 0.96997 * 120.00189 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 3.4559 -0.9811 -1.0913 6 6 3.6862 -1.9766 0.0165 7 6 3.9189 -1.5348 1.3054 8 6 4.1253 -2.4481 2.3224 9 6 4.1093 -3.8029 2.0484 10 6 3.8817 -4.2446 0.7585 11 6 3.6701 -3.3314 -0.2575 12 6 1.7287 0.0849 -2.4117 13 1 0.7847 0.6149 -2.2855 14 6 2.8526 1.0949 -2.6517 15 6 1.6272 -0.8597 -3.6110 16 6 0.4409 -1.8061 -3.4158 17 6 0.4122 -2.8134 -4.5363 18 1 1.1651 -2.7820 -5.3100 19 6 -0.5745 -3.7757 -4.5732 20 7 -1.4910 -3.8142 -3.6307 21 14 -0.6095 -5.0248 -5.9617 22 1 0.5233 -4.7683 -6.8869 23 1 -0.4885 -6.3938 -5.3991 24 1 -1.8910 -4.9057 -6.7024 25 1 -0.3634 0.5925 -0.8396 26 1 -0.3634 -1.0234 -0.0933 27 1 -0.3634 0.4308 0.9330 28 1 1.8934 -0.5139 0.8899 29 1 1.7477 1.9311 0.9295 30 1 3.1266 1.4438 -0.0850 31 1 1.6088 1.9804 -0.8443 32 1 3.8151 -1.3959 -2.0331 33 1 3.9959 -0.0603 -0.8704 34 1 3.9362 -0.4762 1.5185 35 1 4.3035 -2.1029 3.3301 36 1 4.2749 -4.5163 2.8422 37 1 3.8695 -5.3031 0.5444 38 1 3.4929 -3.6765 -1.2655 39 1 2.9250 1.7678 -1.7973 40 1 3.7967 0.5649 -2.7778 41 1 2.6370 1.6713 -3.5513 42 1 1.4816 -0.2773 -4.5208 43 1 2.5455 -1.4408 -3.6947 44 1 0.5433 -2.3252 -2.4629 45 1 -0.4859 -1.2324 -3.4192 46 1 -2.1849 -4.4914 -3.6564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172491299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:35 Heat of formation + Delta-G solvation = 23.119848 kcal Electronic energy + Delta-G solvation = -22346.797511 eV Core-core repulsion = 19429.159388 eV Total energy + Delta-G solvation = -2917.638122 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.84418 -38.24540 -33.94084 -32.54462 -32.20577 -30.67382 -29.68595 -28.80578 -27.04198 -25.28086 -24.58211 -22.45115 -21.51596 -21.19120 -20.50551 -18.31593 -16.55522 -16.11564 -15.99030 -15.31372 -15.13484 -14.56236 -14.34789 -13.81639 -13.77337 -13.18063 -13.10525 -12.64295 -12.60636 -12.51238 -12.21433 -12.07148 -11.87100 -11.62936 -11.46874 -11.16572 -10.97629 -10.88407 -10.82925 -10.74968 -10.74541 -10.38734 -10.14950 -9.91252 -9.54178 -9.12143 -8.83078 -8.68156 -8.52437 -8.19353 -7.67203 -5.85109 -3.85654 1.54011 1.62169 3.37604 3.45129 3.48973 3.91140 4.46825 4.56713 4.98898 5.01926 5.14923 5.18237 5.26937 5.32422 5.40688 5.50502 5.51200 5.54544 5.67401 5.68761 5.74028 5.80704 5.88881 5.91024 6.02306 6.09263 6.12720 6.21977 6.25728 6.28517 6.34390 6.48028 6.50559 6.62944 6.70904 6.72854 6.78794 6.90531 6.93827 7.21346 7.36927 7.62952 7.68496 7.89490 8.13022 8.29507 8.62066 9.23772 9.76664 11.25889 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.005856 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.311327 B = 4780.530255 C = 5875.347255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.071 3.929 3 C -0.188 4.188 4 N -0.504 5.504 5 C 0.091 3.909 6 C -0.068 4.068 7 C -0.119 4.119 8 C -0.127 4.127 9 C -0.127 4.127 10 C -0.120 4.120 11 C -0.091 4.091 12 C 0.080 3.920 13 H 0.078 0.922 14 C -0.202 4.202 15 C -0.098 4.098 16 C 0.030 3.970 17 C -0.515 4.515 18 H 0.050 0.950 19 C 0.057 3.943 20 N -0.894 5.894 21 Si 0.884 3.116 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.286 1.286 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.082 0.918 29 H 0.051 0.949 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.040 0.960 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.128 0.872 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.044 0.956 43 H 0.045 0.955 44 H 0.036 0.964 45 H 0.005 0.995 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.946 7.422 11.144 17.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.038 4.038 3 C -0.246 4.246 4 N -0.226 5.226 5 C -0.036 4.036 6 C -0.069 4.069 7 C -0.137 4.137 8 C -0.145 4.145 9 C -0.146 4.146 10 C -0.139 4.139 11 C -0.110 4.110 12 C -0.027 4.027 13 H 0.096 0.904 14 C -0.261 4.261 15 C -0.136 4.136 16 C -0.007 4.007 17 C -0.553 4.553 18 H 0.068 0.932 19 C -0.143 4.143 20 N -0.534 5.534 21 Si 0.712 3.288 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.073 0.927 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.100 0.900 29 H 0.070 0.930 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.058 0.942 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.146 0.854 39 H 0.085 0.915 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.064 0.936 44 H 0.054 0.946 45 H 0.024 0.976 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 10.532 6.879 11.139 16.802 hybrid contribution 0.255 -0.022 -0.714 0.759 sum 10.787 6.858 10.425 16.494 Atomic orbital electron populations 1.21812 0.94181 1.03372 1.00489 1.21793 0.96134 0.91602 0.94246 1.22810 1.00878 0.99067 1.01882 1.62309 1.13332 1.45465 1.01536 1.21099 0.89915 0.95544 0.97018 1.19855 0.98120 0.94565 0.94334 1.20999 1.00903 0.99118 0.92727 1.21015 1.01438 0.93414 0.98680 1.21071 1.01179 0.95615 0.96687 1.21170 0.99955 0.99649 0.93081 1.21181 0.97315 0.92503 0.99970 1.21878 0.97133 0.92851 0.90869 0.90444 1.23048 1.00346 1.00440 1.02245 1.21647 1.01318 0.97041 0.93596 1.19002 0.91115 0.93063 0.97557 1.21375 1.11149 1.13449 1.09372 0.93209 1.24976 0.95893 0.97673 0.95804 1.69988 1.15329 1.34845 1.33216 0.86674 0.77714 0.81691 0.82714 1.19931 1.21187 1.21227 0.92693 0.91056 0.93270 0.89999 0.93004 0.92697 0.91587 0.89775 0.94189 0.86757 0.86691 0.86669 0.86278 0.85422 0.91512 0.92638 0.92741 0.93777 0.93606 0.94603 0.97618 0.93383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.12 37.16 0.34 -1.82 16 2 C 0.07 1.02 2.72 -67.71 -0.18 0.83 16 3 C -0.19 -2.23 7.30 37.16 0.27 -1.96 16 4 N -0.50 -8.22 3.64 -220.14 -0.80 -9.02 16 5 C 0.09 1.34 3.62 -4.97 -0.02 1.32 16 6 C -0.07 -0.99 4.91 -104.62 -0.51 -1.51 16 7 C -0.12 -1.52 7.86 -39.58 -0.31 -1.83 16 8 C -0.13 -1.52 10.05 -39.58 -0.40 -1.92 16 9 C -0.13 -1.56 10.05 -39.59 -0.40 -1.96 16 10 C -0.12 -1.65 10.05 -39.58 -0.40 -2.05 16 11 C -0.09 -1.40 9.70 -39.58 -0.38 -1.79 16 12 C 0.08 1.35 1.67 -67.71 -0.11 1.24 16 13 H 0.08 1.35 5.66 -51.93 -0.29 1.06 16 14 C -0.20 -2.77 7.58 37.16 0.28 -2.49 16 15 C -0.10 -2.03 4.73 -26.73 -0.13 -2.16 16 16 C 0.03 0.77 4.91 -27.88 -0.14 0.64 16 17 C -0.51 -14.83 9.11 -34.44 -0.31 -15.14 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.00 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -27.39 13.29 55.43 0.74 -26.66 16 21 Si 0.88 22.12 29.54 -169.99 -5.02 17.10 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 24 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 25 H 0.05 0.86 6.55 -51.93 -0.34 0.52 16 26 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 27 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 1.18 5.33 -51.93 -0.28 0.90 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.62 5.63 -51.93 -0.29 0.33 16 31 H 0.07 0.81 5.72 -51.93 -0.30 0.51 16 32 H 0.08 1.31 6.60 -51.93 -0.34 0.97 16 33 H 0.04 0.52 5.34 -51.92 -0.28 0.25 16 34 H 0.11 1.29 7.82 -52.49 -0.41 0.87 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 37 H 0.12 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 39 H 0.07 0.81 4.02 -51.93 -0.21 0.61 16 40 H 0.05 0.74 6.40 -51.93 -0.33 0.41 16 41 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.05 0.95 7.10 -51.93 -0.37 0.58 16 44 H 0.04 1.00 7.59 -51.93 -0.39 0.61 16 45 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -30.62 347.51 -9.95 -40.58 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.60 Total: 1.79 kcal Atomic # 6 Polarization: -26.52 SS G_CDS: -2.50 Total: -29.02 kcal Atomic # 7 Polarization: -35.61 SS G_CDS: -0.07 Total: -35.68 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -30.62 -9.95 -40.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.697 kcal (2) G-P(sol) polarization free energy of solvation -30.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds