Wall clock time and date at job start Mon Mar 30 2020 01:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46971 * 2 1 4 4 N 1.46907 * 109.47040 * 240.00527 * 2 1 3 5 5 C 1.46896 * 110.99858 * 192.81243 * 4 2 1 6 6 C 1.50707 * 109.47294 * 66.04399 * 5 4 2 7 7 C 1.38228 * 119.99983 * 269.72739 * 6 5 4 8 8 C 1.38241 * 119.99828 * 179.76526 * 7 6 5 9 9 C 1.38233 * 119.99589 * 0.50449 * 8 7 6 10 10 C 1.38233 * 120.00287 * 359.74864 * 9 8 7 11 11 C 1.38233 * 119.99572 * 89.99717 * 6 5 4 12 12 C 1.46901 * 110.99839 * 68.85776 * 4 2 1 13 13 H 1.08998 * 109.47082 * 326.24511 * 12 4 2 14 14 C 1.53004 * 109.46846 * 86.24608 * 12 4 2 15 15 C 1.52998 * 109.46847 * 206.24218 * 12 4 2 16 16 C 1.53007 * 109.47240 * 63.97039 * 15 12 4 17 17 C 1.50701 * 109.47330 * 184.89617 * 16 15 12 18 18 H 1.07997 * 119.99600 * 0.02562 * 17 16 15 19 19 C 1.37872 * 120.00155 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99884 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00067 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47083 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46950 * 120.00412 * 21 19 17 24 24 H 1.48496 * 109.47237 * 239.99849 * 21 19 17 25 25 H 1.08999 * 109.47533 * 54.78883 * 1 2 3 26 26 H 1.09001 * 109.47278 * 174.78828 * 1 2 3 27 27 H 1.09004 * 109.47200 * 294.78642 * 1 2 3 28 28 H 1.08997 * 109.47444 * 120.00405 * 2 1 3 29 29 H 1.08999 * 109.46814 * 64.75141 * 3 2 1 30 30 H 1.09001 * 109.47325 * 184.74536 * 3 2 1 31 31 H 1.08993 * 109.47651 * 304.75191 * 3 2 1 32 32 H 1.08998 * 109.47354 * 186.04847 * 5 4 2 33 33 H 1.09007 * 109.47225 * 306.04626 * 5 4 2 34 34 H 1.07998 * 120.00222 * 359.97438 * 7 6 5 35 35 H 1.07998 * 119.99681 * 180.23249 * 8 7 6 36 36 H 1.08008 * 119.99301 * 179.72775 * 9 8 7 37 37 H 1.08005 * 119.99951 * 179.97438 * 10 9 8 38 38 H 1.08005 * 120.00474 * 0.02562 * 11 6 5 39 39 H 1.08997 * 109.47212 * 299.99352 * 14 12 4 40 40 H 1.08998 * 109.47359 * 60.00073 * 14 12 4 41 41 H 1.08997 * 109.46612 * 179.97438 * 14 12 4 42 42 H 1.08996 * 109.47287 * 183.97326 * 15 12 4 43 43 H 1.08998 * 109.47446 * 303.97335 * 15 12 4 44 44 H 1.08998 * 109.46556 * 304.89944 * 16 15 12 45 45 H 1.08996 * 109.46723 * 64.89486 * 16 15 12 46 46 H 0.96997 * 120.00189 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0196 -0.6924 -1.1996 5 6 3.4559 -0.9811 -1.0913 6 6 3.6862 -1.9766 0.0165 7 6 3.9189 -1.5348 1.3054 8 6 4.1253 -2.4481 2.3224 9 6 4.1093 -3.8029 2.0484 10 6 3.8817 -4.2446 0.7585 11 6 3.6701 -3.3314 -0.2575 12 6 1.7287 0.0849 -2.4117 13 1 0.7847 0.6149 -2.2855 14 6 2.8526 1.0949 -2.6517 15 6 1.6272 -0.8597 -3.6110 16 6 0.4409 -1.8061 -3.4158 17 6 0.4122 -2.8134 -4.5363 18 1 1.1651 -2.7820 -5.3100 19 6 -0.5745 -3.7757 -4.5732 20 7 -1.4910 -3.8142 -3.6307 21 14 -0.6095 -5.0248 -5.9617 22 1 0.5233 -4.7683 -6.8869 23 1 -0.4885 -6.3938 -5.3991 24 1 -1.8910 -4.9057 -6.7024 25 1 -0.3634 0.5925 -0.8396 26 1 -0.3634 -1.0234 -0.0933 27 1 -0.3634 0.4308 0.9330 28 1 1.8934 -0.5139 0.8899 29 1 1.7477 1.9311 0.9295 30 1 3.1266 1.4438 -0.0850 31 1 1.6088 1.9804 -0.8443 32 1 3.8151 -1.3959 -2.0331 33 1 3.9959 -0.0603 -0.8704 34 1 3.9362 -0.4762 1.5185 35 1 4.3035 -2.1029 3.3301 36 1 4.2749 -4.5163 2.8422 37 1 3.8695 -5.3031 0.5444 38 1 3.4929 -3.6765 -1.2655 39 1 2.9250 1.7678 -1.7973 40 1 3.7967 0.5649 -2.7778 41 1 2.6370 1.6713 -3.5513 42 1 1.4816 -0.2773 -4.5208 43 1 2.5455 -1.4408 -3.6947 44 1 0.5433 -2.3252 -2.4629 45 1 -0.4859 -1.2324 -3.4192 46 1 -2.1849 -4.4914 -3.6564 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172491299.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:32:34 Heat of formation + Delta-G solvation = 7.199907 kcal Electronic energy + Delta-G solvation = -22347.487851 eV Core-core repulsion = 19429.159388 eV Total energy + Delta-G solvation = -2918.328463 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.00175 -39.35598 -35.78723 -34.15944 -33.50403 -31.70316 -31.38381 -29.95879 -28.34671 -26.75251 -26.13915 -23.51583 -23.14822 -22.26217 -22.06096 -19.62344 -18.34606 -17.63183 -17.18520 -16.59671 -16.40673 -16.20820 -15.65380 -15.05033 -14.87897 -14.49075 -14.33859 -14.17219 -14.10585 -13.68142 -13.50067 -13.40082 -13.32588 -13.04170 -12.82619 -12.76111 -12.47717 -12.41551 -12.30718 -12.02080 -11.82139 -11.80837 -11.71017 -11.34674 -11.24126 -11.10453 -10.78199 -10.47140 -9.71856 -9.58020 -8.87589 -8.12510 -6.22230 0.51106 0.58145 1.38115 1.38499 1.51436 2.43314 2.83564 3.19727 3.30675 3.89290 3.99923 4.02194 4.15014 4.22658 4.24590 4.33625 4.38619 4.45416 4.53499 4.55785 4.63872 4.71320 4.79408 4.80447 4.84429 4.89324 4.96150 5.04369 5.08457 5.12172 5.16414 5.20727 5.23803 5.36336 5.40118 5.45327 5.51565 5.61473 5.63135 5.69236 5.83515 5.92836 6.07663 6.19740 6.36526 6.43176 6.48258 6.97956 7.45370 8.98762 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014229 B = 0.005856 C = 0.004765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1967.311327 B = 4780.530255 C = 5875.347255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.073 3.927 3 C -0.180 4.180 4 N -0.532 5.532 5 C 0.098 3.902 6 C -0.082 4.082 7 C -0.119 4.119 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.133 4.133 11 C -0.122 4.122 12 C 0.089 3.911 13 H 0.068 0.932 14 C -0.192 4.192 15 C -0.088 4.088 16 C 0.043 3.957 17 C -0.538 4.538 18 H 0.051 0.949 19 C 0.001 3.999 20 N -0.931 5.931 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.280 1.280 24 H -0.278 1.278 25 H 0.045 0.955 26 H 0.030 0.970 27 H 0.075 0.925 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.063 0.937 34 H 0.137 0.863 35 H 0.148 0.852 36 H 0.142 0.858 37 H 0.126 0.874 38 H 0.100 0.900 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.045 0.955 43 H 0.041 0.959 44 H 0.006 0.994 45 H -0.025 1.025 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.490 8.545 12.372 19.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.035 4.035 3 C -0.238 4.238 4 N -0.255 5.255 5 C -0.029 4.029 6 C -0.082 4.082 7 C -0.137 4.137 8 C -0.142 4.142 9 C -0.146 4.146 10 C -0.151 4.151 11 C -0.141 4.141 12 C -0.019 4.019 13 H 0.086 0.914 14 C -0.250 4.250 15 C -0.126 4.126 16 C 0.006 3.994 17 C -0.576 4.576 18 H 0.070 0.930 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.782 3.218 22 H -0.188 1.188 23 H -0.206 1.206 24 H -0.204 1.204 25 H 0.064 0.936 26 H 0.049 0.951 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.154 0.846 35 H 0.165 0.835 36 H 0.160 0.840 37 H 0.144 0.856 38 H 0.118 0.882 39 H 0.108 0.892 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.025 0.975 45 H -0.007 1.007 46 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 12.090 8.012 12.364 19.058 hybrid contribution -0.266 -0.420 -1.035 1.148 sum 11.824 7.592 11.329 18.050 Atomic orbital electron populations 1.21787 0.95497 1.00753 1.01481 1.21783 0.95007 0.93447 0.93299 1.22699 1.01464 0.96740 1.02889 1.62154 1.14745 1.46562 1.02072 1.21032 0.89027 0.96421 0.96419 1.19919 0.98972 0.93976 0.95381 1.21236 1.00100 1.00520 0.91867 1.21434 0.99750 0.93045 0.99954 1.21419 1.00048 0.96706 0.96449 1.21352 1.00253 0.99872 0.93671 1.21160 0.99690 0.93830 0.99412 1.21625 0.98273 0.92436 0.89591 0.91417 1.22938 0.98833 0.99732 1.03531 1.21475 0.98431 0.96785 0.95934 1.18773 0.91994 0.93137 0.95457 1.21810 1.11340 1.14384 1.10090 0.93031 1.25895 0.95373 0.99852 0.98521 1.70131 1.16033 1.35806 1.35228 0.85527 0.78189 0.78735 0.79365 1.18796 1.20555 1.20384 0.93636 0.95101 0.90601 0.89679 0.90973 0.91427 0.91900 0.91683 0.91882 0.84561 0.83462 0.83974 0.85597 0.88154 0.89205 0.92248 0.92214 0.93600 0.94007 0.97524 1.00712 0.93156 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.12 71.98 0.66 -3.62 16 2 C 0.07 2.01 2.72 44.91 0.12 2.13 16 3 C -0.18 -3.70 7.30 71.98 0.53 -3.17 16 4 N -0.53 -17.59 3.64 -850.39 -3.10 -20.69 16 5 C 0.10 2.85 3.62 85.56 0.31 3.16 16 6 C -0.08 -2.38 4.91 -19.87 -0.10 -2.48 16 7 C -0.12 -2.77 7.86 22.27 0.17 -2.60 16 8 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 9 C -0.13 -2.90 10.05 22.27 0.22 -2.67 16 10 C -0.13 -3.69 10.05 22.27 0.22 -3.46 16 11 C -0.12 -3.95 9.70 22.27 0.22 -3.73 16 12 C 0.09 3.01 1.67 44.92 0.08 3.08 16 13 H 0.07 2.42 5.66 -2.39 -0.01 2.40 16 14 C -0.19 -4.92 7.58 71.98 0.55 -4.38 16 15 C -0.09 -3.79 4.73 30.60 0.14 -3.65 16 16 C 0.04 2.40 4.91 29.85 0.15 2.55 16 17 C -0.54 -32.11 9.11 25.60 0.23 -31.88 16 18 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 19 C 0.00 0.05 5.46 84.65 0.46 0.51 16 20 N -0.93 -59.08 13.29 21.45 0.28 -58.79 16 21 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 22 H -0.26 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 24 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 25 H 0.04 1.46 6.55 -2.39 -0.02 1.45 16 26 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 28 H 0.09 2.30 5.33 -2.39 -0.01 2.29 16 29 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 30 H 0.07 1.24 5.63 -2.39 -0.01 1.23 16 31 H 0.06 1.36 5.72 -2.39 -0.01 1.34 16 32 H 0.06 2.10 6.60 -2.39 -0.02 2.08 16 33 H 0.06 1.51 5.34 -2.38 -0.01 1.50 16 34 H 0.14 2.54 7.82 -2.91 -0.02 2.52 16 35 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.14 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.13 3.13 8.06 -2.91 -0.02 3.11 16 38 H 0.10 3.65 8.06 -2.91 -0.02 3.62 16 39 H 0.09 1.91 4.02 -2.39 -0.01 1.90 16 40 H 0.06 1.48 6.40 -2.39 -0.02 1.47 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.04 1.80 7.10 -2.39 -0.02 1.79 16 44 H 0.01 0.38 7.59 -2.39 -0.02 0.37 16 45 H -0.03 -1.54 8.14 -2.39 -0.02 -1.56 16 46 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -69.21 347.51 4.34 -64.87 By element: Atomic # 1 Polarization: 18.00 SS G_CDS: 0.94 Total: 18.94 kcal Atomic # 6 Polarization: -56.75 SS G_CDS: 4.19 Total: -52.57 kcal Atomic # 7 Polarization: -76.67 SS G_CDS: -2.81 Total: -79.49 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Total: -69.21 4.34 -64.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172491299.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.074 kcal (2) G-P(sol) polarization free energy of solvation -69.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds