Wall clock time and date at job start Mon Mar 30 2020 01:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46828 * 2 1 4 4 C 1.46900 * 110.99931 * 194.00847 * 3 2 1 5 5 C 1.50706 * 109.47071 * 66.04524 * 4 3 2 6 6 C 1.38238 * 120.00077 * 90.00104 * 5 4 3 7 7 C 1.38229 * 120.00061 * 180.02562 * 6 5 4 8 8 C 1.38239 * 120.00051 * 0.25255 * 7 6 5 9 9 C 1.50694 * 119.99816 * 179.72639 * 8 7 6 10 10 C 1.38233 * 119.99541 * 359.46949 * 8 7 6 11 11 C 1.38232 * 120.00577 * 0.53139 * 10 8 7 12 12 C 1.46903 * 111.00102 * 70.05705 * 3 2 1 13 13 H 1.08995 * 109.47164 * 313.40881 * 12 3 2 14 14 C 1.52997 * 109.47188 * 73.41258 * 12 3 2 15 15 C 1.53007 * 109.46844 * 193.41071 * 12 3 2 16 16 C 1.52996 * 109.46938 * 64.09891 * 15 12 3 17 17 C 1.50706 * 109.46891 * 182.55302 * 16 15 12 18 18 H 1.07995 * 120.00218 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99863 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00080 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99954 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46958 * 120.00217 * 21 19 17 24 24 H 1.48506 * 109.47105 * 240.00046 * 21 19 17 25 25 H 1.09002 * 109.47137 * 174.19823 * 1 2 3 26 26 H 1.08997 * 109.47451 * 294.19951 * 1 2 3 27 27 H 1.09000 * 109.47160 * 54.20461 * 1 2 3 28 28 H 1.08992 * 109.47358 * 239.99794 * 2 1 3 29 29 H 1.08997 * 109.46911 * 119.99644 * 2 1 3 30 30 H 1.08998 * 109.47466 * 306.04680 * 4 3 2 31 31 H 1.08997 * 109.47556 * 186.04190 * 4 3 2 32 32 H 1.07999 * 119.99722 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.00238 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.47127 * 90.00404 * 9 8 7 35 35 H 1.08999 * 109.47140 * 209.99878 * 9 8 7 36 36 H 1.08996 * 109.47478 * 329.99803 * 9 8 7 37 37 H 1.08003 * 119.99895 * 180.30117 * 10 8 7 38 38 H 1.07993 * 120.00727 * 179.76696 * 11 10 8 39 39 H 1.09008 * 109.47215 * 60.00039 * 14 12 3 40 40 H 1.08998 * 109.47343 * 179.97438 * 14 12 3 41 41 H 1.09001 * 109.47079 * 299.99978 * 14 12 3 42 42 H 1.09000 * 109.46768 * 184.09883 * 15 12 3 43 43 H 1.08995 * 109.47158 * 304.09686 * 15 12 3 44 44 H 1.09000 * 109.47364 * 302.55232 * 16 15 12 45 45 H 1.09002 * 109.47601 * 62.55838 * 16 15 12 46 46 H 0.97012 * 120.00056 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4496 1.4378 -0.3320 5 6 3.6519 0.9860 -1.7554 6 6 3.6155 1.9078 -2.7850 7 6 3.8005 1.4933 -4.0906 8 6 4.0167 0.1563 -4.3673 9 6 4.2123 -0.2964 -5.7913 10 6 4.0588 -0.7646 -3.3372 11 6 3.8738 -0.3502 -2.0315 12 6 1.7540 2.0373 1.2892 13 1 0.7256 1.8397 1.5913 14 6 2.7115 1.4849 2.3470 15 6 1.9637 3.5465 1.1499 16 6 0.9379 4.1153 0.1675 17 6 1.1840 5.5905 -0.0177 18 1 1.9916 6.0739 0.5119 19 6 0.3789 6.3228 -0.8641 20 7 -0.6042 5.7341 -1.5094 21 14 0.6845 8.1512 -1.0943 22 1 1.8413 8.5684 -0.2620 23 1 0.9769 8.4281 -2.5236 24 1 -0.5224 8.9108 -0.6798 25 1 -0.3633 -1.0224 -0.1039 26 1 -0.3634 0.4212 0.9373 27 1 -0.3633 0.6011 -0.8335 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0031 0.7816 0.3396 31 1 3.8110 2.4601 -0.2205 32 1 3.4417 2.9517 -2.5692 33 1 3.7717 2.2133 -4.8950 34 1 5.2727 -0.2611 -6.0414 35 1 3.8469 -1.3174 -5.9014 36 1 3.6588 0.3617 -6.4610 37 1 4.2326 -1.8085 -3.5529 38 1 3.9029 -1.0701 -1.2271 39 1 3.7400 1.6826 2.0449 40 1 2.5148 1.9692 3.3035 41 1 2.5622 0.4098 2.4463 42 1 1.8378 4.0221 2.1226 43 1 2.9696 3.7408 0.7779 44 1 1.0336 3.6076 -0.7923 45 1 -0.0668 3.9613 0.5614 46 1 -1.1705 6.2493 -2.1053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172508656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:47 Heat of formation + Delta-G solvation = 6.589394 kcal Electronic energy + Delta-G solvation = -21877.546881 eV Core-core repulsion = 18959.191944 eV Total energy + Delta-G solvation = -2918.354936 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.59847 -38.04465 -33.85575 -32.99027 -31.98290 -30.67981 -29.99785 -29.04931 -26.99409 -25.13825 -24.00744 -22.80352 -22.09613 -20.80278 -20.55122 -18.65280 -16.36720 -16.09057 -15.42030 -15.20241 -15.13917 -14.50807 -14.36399 -14.10458 -13.64527 -13.38871 -13.17494 -12.72059 -12.67749 -12.42090 -12.22675 -12.18438 -11.95471 -11.68910 -11.52513 -11.27690 -11.19553 -11.13018 -10.88265 -10.77113 -10.66125 -10.41496 -10.27461 -10.03510 -9.56271 -9.16972 -8.85083 -8.65161 -8.30609 -8.20922 -7.68001 -5.86529 -3.87660 1.53371 1.65751 3.36700 3.44321 3.48084 3.88992 4.50056 4.55337 4.93851 4.97688 5.15116 5.22641 5.28967 5.30283 5.48442 5.48997 5.51834 5.57786 5.58201 5.68858 5.70064 5.79736 5.83422 5.86633 5.91115 5.98581 6.06506 6.24257 6.26821 6.31453 6.33606 6.37886 6.39996 6.62521 6.65746 6.73120 6.80598 6.90441 6.95399 7.25492 7.33203 7.59287 7.65736 7.87949 8.10495 8.26674 8.59648 9.21867 9.74954 11.24314 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.005593 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.267279 B = 5005.488319 C = 6353.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.510 5.510 4 C 0.091 3.909 5 C -0.073 4.073 6 C -0.085 4.085 7 C -0.120 4.120 8 C -0.095 4.095 9 C -0.111 4.111 10 C -0.128 4.128 11 C -0.115 4.115 12 C 0.079 3.921 13 H 0.080 0.920 14 C -0.185 4.185 15 C -0.101 4.101 16 C 0.030 3.970 17 C -0.517 4.517 18 H 0.050 0.950 19 C 0.058 3.942 20 N -0.893 5.893 21 Si 0.884 3.116 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.286 1.286 25 H 0.049 0.951 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.026 0.974 30 H 0.036 0.964 31 H 0.089 0.911 32 H 0.130 0.870 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.115 0.885 38 H 0.114 0.886 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.007 0.993 46 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 -14.674 -1.419 17.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.233 5.233 4 C -0.036 4.036 5 C -0.074 4.074 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.095 4.095 9 C -0.168 4.168 10 C -0.146 4.146 11 C -0.134 4.134 12 C -0.029 4.029 13 H 0.098 0.902 14 C -0.244 4.244 15 C -0.139 4.139 16 C -0.007 4.007 17 C -0.556 4.556 18 H 0.068 0.932 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.712 3.288 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.212 1.212 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.044 0.956 30 H 0.054 0.946 31 H 0.108 0.892 32 H 0.148 0.852 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.133 0.867 38 H 0.132 0.868 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.053 0.947 45 H 0.026 0.974 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 8.558 -14.376 -1.892 16.837 hybrid contribution 0.444 0.619 0.486 0.904 sum 9.002 -13.757 -1.406 16.500 Atomic orbital electron populations 1.21759 0.95065 1.00638 1.02899 1.22177 0.96239 0.89904 1.00079 1.62174 1.14538 1.15419 1.31204 1.21082 0.89597 1.01698 0.91246 1.19813 0.98827 0.93109 0.95624 1.21199 0.96775 1.00458 0.91961 1.21052 1.00812 0.95097 0.96884 1.19850 1.00497 0.93733 0.95451 1.20753 1.01748 1.01390 0.92922 1.20869 1.02378 0.98796 0.92557 1.20966 1.00797 0.95285 0.96330 1.21921 0.98617 0.96372 0.86014 0.90182 1.22507 1.00894 1.00333 1.00628 1.21707 1.01065 0.90802 1.00338 1.18997 0.92627 0.94321 0.94771 1.21377 1.14315 0.94638 1.25245 0.93153 1.24976 0.95390 0.97856 0.96064 1.69993 1.18678 1.35486 1.29125 0.86674 0.77986 0.86365 0.77777 1.19907 1.21161 1.21202 0.93232 0.92892 0.91298 0.90807 0.95633 0.94629 0.89236 0.85159 0.86293 0.91603 0.91928 0.91669 0.86740 0.86798 0.92640 0.92336 0.93519 0.93491 0.93466 0.94743 0.97432 0.93340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.83 37.16 0.37 -1.78 16 2 C 0.04 0.64 5.42 -3.82 -0.02 0.62 16 3 N -0.51 -8.54 3.76 -228.09 -0.86 -9.40 16 4 C 0.09 1.40 3.95 -4.97 -0.02 1.38 16 5 C -0.07 -1.11 4.93 -104.62 -0.52 -1.63 16 6 C -0.09 -1.38 9.70 -39.58 -0.38 -1.76 16 7 C -0.12 -1.73 9.70 -39.58 -0.38 -2.11 16 8 C -0.10 -1.22 5.88 -104.63 -0.62 -1.83 16 9 C -0.11 -1.09 10.01 36.00 0.36 -0.73 16 10 C -0.13 -1.59 9.70 -39.59 -0.38 -1.97 16 11 C -0.12 -1.52 7.85 -39.58 -0.31 -1.84 16 12 C 0.08 1.35 2.20 -67.71 -0.15 1.20 16 13 H 0.08 1.43 6.32 -51.93 -0.33 1.10 16 14 C -0.18 -2.59 8.41 37.16 0.31 -2.28 16 15 C -0.10 -2.09 4.60 -26.73 -0.12 -2.21 16 16 C 0.03 0.78 4.88 -27.88 -0.14 0.64 16 17 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 18 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.32 13.29 55.43 0.74 -26.58 16 21 Si 0.88 22.00 29.54 -169.99 -5.02 16.98 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.05 0.78 6.70 -51.93 -0.35 0.44 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.07 1.05 5.23 -51.93 -0.27 0.78 16 29 H 0.03 0.34 6.49 -51.93 -0.34 0.01 16 30 H 0.04 0.49 6.78 -51.93 -0.35 0.14 16 31 H 0.09 1.49 6.14 -51.93 -0.32 1.17 16 32 H 0.13 2.28 8.06 -52.49 -0.42 1.85 16 33 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 34 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 35 H 0.06 0.54 8.09 -51.93 -0.42 0.12 16 36 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 37 H 0.11 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.11 1.31 7.78 -52.49 -0.41 0.91 16 39 H 0.05 0.76 6.54 -51.92 -0.34 0.42 16 40 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.05 0.60 6.67 -51.93 -0.35 0.25 16 42 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 43 H 0.05 0.96 6.35 -51.93 -0.33 0.63 16 44 H 0.03 0.96 7.65 -51.93 -0.40 0.57 16 45 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 46 H 0.26 7.43 8.31 -40.81 -0.34 7.09 16 LS Contribution 357.42 15.07 5.39 5.39 Total: -1.00 -30.63 357.42 -10.13 -40.76 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.96 Total: 0.70 kcal Atomic # 6 Polarization: -25.43 SS G_CDS: -2.42 Total: -27.85 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: -0.12 Total: -35.98 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.98 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.63 -10.13 -40.76 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.352 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.762 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.589 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds