Wall clock time and date at job start Mon Mar 30 2020 01:37:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46899 * 109.46828 * 2 1 4 4 C 1.46900 * 110.99931 * 194.00847 * 3 2 1 5 5 C 1.50706 * 109.47071 * 66.04524 * 4 3 2 6 6 C 1.38238 * 120.00077 * 90.00104 * 5 4 3 7 7 C 1.38229 * 120.00061 * 180.02562 * 6 5 4 8 8 C 1.38239 * 120.00051 * 0.25255 * 7 6 5 9 9 C 1.50694 * 119.99816 * 179.72639 * 8 7 6 10 10 C 1.38233 * 119.99541 * 359.46949 * 8 7 6 11 11 C 1.38232 * 120.00577 * 0.53139 * 10 8 7 12 12 C 1.46903 * 111.00102 * 70.05705 * 3 2 1 13 13 H 1.08995 * 109.47164 * 313.40881 * 12 3 2 14 14 C 1.52997 * 109.47188 * 73.41258 * 12 3 2 15 15 C 1.53007 * 109.46844 * 193.41071 * 12 3 2 16 16 C 1.52996 * 109.46938 * 64.09891 * 15 12 3 17 17 C 1.50706 * 109.46891 * 182.55302 * 16 15 12 18 18 H 1.07995 * 120.00218 * 0.02562 * 17 16 15 19 19 C 1.37874 * 119.99863 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00080 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99954 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47060 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.46958 * 120.00217 * 21 19 17 24 24 H 1.48506 * 109.47105 * 240.00046 * 21 19 17 25 25 H 1.09002 * 109.47137 * 174.19823 * 1 2 3 26 26 H 1.08997 * 109.47451 * 294.19951 * 1 2 3 27 27 H 1.09000 * 109.47160 * 54.20461 * 1 2 3 28 28 H 1.08992 * 109.47358 * 239.99794 * 2 1 3 29 29 H 1.08997 * 109.46911 * 119.99644 * 2 1 3 30 30 H 1.08998 * 109.47466 * 306.04680 * 4 3 2 31 31 H 1.08997 * 109.47556 * 186.04190 * 4 3 2 32 32 H 1.07999 * 119.99722 * 359.97438 * 6 5 4 33 33 H 1.07995 * 120.00238 * 179.97438 * 7 6 5 34 34 H 1.09009 * 109.47127 * 90.00404 * 9 8 7 35 35 H 1.08999 * 109.47140 * 209.99878 * 9 8 7 36 36 H 1.08996 * 109.47478 * 329.99803 * 9 8 7 37 37 H 1.08003 * 119.99895 * 180.30117 * 10 8 7 38 38 H 1.07993 * 120.00727 * 179.76696 * 11 10 8 39 39 H 1.09008 * 109.47215 * 60.00039 * 14 12 3 40 40 H 1.08998 * 109.47343 * 179.97438 * 14 12 3 41 41 H 1.09001 * 109.47079 * 299.99978 * 14 12 3 42 42 H 1.09000 * 109.46768 * 184.09883 * 15 12 3 43 43 H 1.08995 * 109.47158 * 304.09686 * 15 12 3 44 44 H 1.09000 * 109.47364 * 302.55232 * 16 15 12 45 45 H 1.09002 * 109.47601 * 62.55838 * 16 15 12 46 46 H 0.97012 * 120.00056 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4496 1.4378 -0.3320 5 6 3.6519 0.9860 -1.7554 6 6 3.6155 1.9078 -2.7850 7 6 3.8005 1.4933 -4.0906 8 6 4.0167 0.1563 -4.3673 9 6 4.2123 -0.2964 -5.7913 10 6 4.0588 -0.7646 -3.3372 11 6 3.8738 -0.3502 -2.0315 12 6 1.7540 2.0373 1.2892 13 1 0.7256 1.8397 1.5913 14 6 2.7115 1.4849 2.3470 15 6 1.9637 3.5465 1.1499 16 6 0.9379 4.1153 0.1675 17 6 1.1840 5.5905 -0.0177 18 1 1.9916 6.0739 0.5119 19 6 0.3789 6.3228 -0.8641 20 7 -0.6042 5.7341 -1.5094 21 14 0.6845 8.1512 -1.0943 22 1 1.8413 8.5684 -0.2620 23 1 0.9769 8.4281 -2.5236 24 1 -0.5224 8.9108 -0.6798 25 1 -0.3633 -1.0224 -0.1039 26 1 -0.3634 0.4212 0.9373 27 1 -0.3633 0.6011 -0.8335 28 1 1.8934 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 4.0031 0.7816 0.3396 31 1 3.8110 2.4601 -0.2205 32 1 3.4417 2.9517 -2.5692 33 1 3.7717 2.2133 -4.8950 34 1 5.2727 -0.2611 -6.0414 35 1 3.8469 -1.3174 -5.9014 36 1 3.6588 0.3617 -6.4610 37 1 4.2326 -1.8085 -3.5529 38 1 3.9029 -1.0701 -1.2271 39 1 3.7400 1.6826 2.0449 40 1 2.5148 1.9692 3.3035 41 1 2.5622 0.4098 2.4463 42 1 1.8378 4.0221 2.1226 43 1 2.9696 3.7408 0.7779 44 1 1.0336 3.6076 -0.7923 45 1 -0.0668 3.9613 0.5614 46 1 -1.1705 6.2493 -2.1053 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172508656.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:37:46 Heat of formation + Delta-G solvation = -9.003116 kcal Electronic energy + Delta-G solvation = -21878.223023 eV Core-core repulsion = 18959.191944 eV Total energy + Delta-G solvation = -2919.031078 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.74563 -39.27094 -35.66154 -34.35287 -33.55164 -31.76475 -31.42953 -30.48902 -28.06124 -27.04885 -25.12172 -24.13185 -23.39624 -22.47341 -21.73782 -20.01240 -18.36883 -17.52893 -16.61536 -16.55311 -16.31392 -16.25474 -15.66490 -15.32874 -14.67621 -14.51866 -14.42187 -14.24950 -14.10778 -13.98701 -13.42725 -13.29441 -13.18034 -13.10998 -12.94663 -12.83550 -12.61067 -12.44674 -12.33911 -12.32218 -11.94658 -11.78360 -11.69474 -11.57103 -11.29850 -11.15083 -10.90439 -10.48442 -9.74419 -9.37474 -8.91120 -8.13124 -6.23319 0.46172 0.56469 1.38361 1.38564 1.51600 2.42985 2.77690 3.19254 3.29588 3.89008 3.95162 4.01159 4.13110 4.19876 4.26179 4.28636 4.32602 4.44499 4.49770 4.62067 4.67476 4.71277 4.73543 4.79711 4.86669 4.87315 4.92624 4.98587 5.02944 5.05324 5.13510 5.19877 5.24603 5.31196 5.34598 5.39116 5.49567 5.56739 5.60404 5.75679 5.82556 5.90798 6.05240 6.18883 6.33658 6.37924 6.41895 6.96974 7.44680 8.98233 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013079 B = 0.005593 C = 0.004406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2140.267279 B = 5005.488319 C = 6353.298379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.048 3.952 3 N -0.538 5.538 4 C 0.098 3.902 5 C -0.087 4.087 6 C -0.115 4.115 7 C -0.136 4.136 8 C -0.096 4.096 9 C -0.110 4.110 10 C -0.125 4.125 11 C -0.112 4.112 12 C 0.085 3.915 13 H 0.069 0.931 14 C -0.173 4.173 15 C -0.091 4.091 16 C 0.043 3.957 17 C -0.539 4.539 18 H 0.053 0.947 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.957 3.043 22 H -0.263 1.263 23 H -0.280 1.280 24 H -0.278 1.278 25 H 0.077 0.923 26 H 0.046 0.954 27 H 0.034 0.966 28 H 0.079 0.921 29 H 0.049 0.951 30 H 0.059 0.941 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.060 0.940 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.004 0.996 45 H -0.025 1.025 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -16.513 -1.166 19.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.080 4.080 3 N -0.262 5.262 4 C -0.029 4.029 5 C -0.088 4.088 6 C -0.134 4.134 7 C -0.154 4.154 8 C -0.097 4.097 9 C -0.166 4.166 10 C -0.143 4.143 11 C -0.131 4.131 12 C -0.023 4.023 13 H 0.087 0.913 14 C -0.232 4.232 15 C -0.128 4.128 16 C 0.006 3.994 17 C -0.577 4.577 18 H 0.072 0.928 19 C -0.196 4.196 20 N -0.572 5.572 21 Si 0.782 3.218 22 H -0.187 1.187 23 H -0.205 1.205 24 H -0.204 1.204 25 H 0.096 0.904 26 H 0.065 0.935 27 H 0.053 0.947 28 H 0.098 0.902 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.140 0.860 34 H 0.099 0.901 35 H 0.098 0.902 36 H 0.084 0.916 37 H 0.165 0.835 38 H 0.156 0.844 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.022 0.978 45 H -0.006 1.006 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.028 -16.219 -1.630 19.138 hybrid contribution -0.036 1.164 0.347 1.215 sum 9.991 -15.055 -1.283 18.114 Atomic orbital electron populations 1.21740 0.95604 1.01621 1.01095 1.22192 0.95713 0.88717 1.01336 1.62065 1.15734 1.17136 1.31238 1.20986 0.88975 1.00870 0.92086 1.19850 0.99853 0.94068 0.95024 1.21109 0.99279 0.99360 0.93635 1.21193 1.01478 0.96526 0.96173 1.20232 0.99093 0.92867 0.97473 1.20808 1.02836 1.02263 0.90709 1.21283 1.00800 1.00281 0.91940 1.21205 0.99758 0.94476 0.97624 1.21698 0.99114 0.93922 0.87605 0.91263 1.22367 0.99983 1.01389 0.99462 1.21520 0.99020 0.93711 0.98590 1.18772 0.92528 0.93525 0.94586 1.21813 1.14441 0.96057 1.25432 0.92839 1.25899 0.94982 1.03119 0.95587 1.70138 1.19698 1.37600 1.29801 0.85524 0.78324 0.79987 0.77964 1.18698 1.20549 1.20413 0.90401 0.93462 0.94713 0.90236 0.93333 0.92341 0.91600 0.88476 0.85986 0.90124 0.90154 0.91634 0.83483 0.84404 0.92108 0.91596 0.91506 0.93203 0.93492 0.97753 1.00640 0.93129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 9.83 71.98 0.71 -3.45 16 2 C 0.05 1.32 5.42 86.30 0.47 1.79 16 3 N -0.54 -18.19 3.76 -875.53 -3.29 -21.48 16 4 C 0.10 3.01 3.95 85.56 0.34 3.35 16 5 C -0.09 -2.67 4.93 -19.86 -0.10 -2.76 16 6 C -0.12 -3.95 9.70 22.27 0.22 -3.73 16 7 C -0.14 -4.01 9.70 22.27 0.22 -3.79 16 8 C -0.10 -2.32 5.88 -19.87 -0.12 -2.44 16 9 C -0.11 -1.87 10.01 71.23 0.71 -1.15 16 10 C -0.13 -2.76 9.70 22.27 0.22 -2.55 16 11 C -0.11 -2.73 7.85 22.27 0.17 -2.55 16 12 C 0.08 2.91 2.20 44.92 0.10 3.01 16 13 H 0.07 2.51 6.32 -2.39 -0.02 2.50 16 14 C -0.17 -4.49 8.41 71.98 0.61 -3.89 16 15 C -0.09 -3.86 4.60 30.60 0.14 -3.72 16 16 C 0.04 2.37 4.88 29.85 0.15 2.52 16 17 C -0.54 -32.01 9.11 25.60 0.23 -31.78 16 18 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 19 C 0.00 0.08 5.46 84.65 0.46 0.55 16 20 N -0.93 -59.11 13.29 21.45 0.28 -58.82 16 21 Si 0.96 46.01 29.54 68.60 2.03 48.04 16 22 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 23 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 24 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 25 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 26 H 0.05 1.40 6.70 -2.39 -0.02 1.38 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.08 2.11 5.23 -2.39 -0.01 2.10 16 29 H 0.05 1.14 6.49 -2.39 -0.02 1.12 16 30 H 0.06 1.50 6.78 -2.39 -0.02 1.49 16 31 H 0.07 2.29 6.14 -2.39 -0.01 2.28 16 32 H 0.10 3.84 8.06 -2.91 -0.02 3.82 16 33 H 0.12 3.34 8.06 -2.91 -0.02 3.32 16 34 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 35 H 0.08 1.10 8.09 -2.39 -0.02 1.08 16 36 H 0.06 1.12 8.09 -2.39 -0.02 1.10 16 37 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 38 H 0.14 2.66 7.78 -2.91 -0.02 2.64 16 39 H 0.06 1.52 6.54 -2.38 -0.02 1.50 16 40 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 1.49 6.67 -2.39 -0.02 1.47 16 42 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.05 1.98 6.35 -2.39 -0.02 1.97 16 44 H 0.00 0.25 7.65 -2.39 -0.02 0.23 16 45 H -0.02 -1.51 8.14 -2.39 -0.02 -1.52 16 46 H 0.26 15.48 8.31 -92.70 -0.77 14.71 16 Total: -1.00 -69.17 357.42 4.46 -64.71 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.92 Total: 18.17 kcal Atomic # 6 Polarization: -55.13 SS G_CDS: 4.52 Total: -50.61 kcal Atomic # 7 Polarization: -77.29 SS G_CDS: -3.01 Total: -80.30 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.04 kcal Total: -69.17 4.46 -64.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172508656.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.703 kcal (2) G-P(sol) polarization free energy of solvation -69.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds