Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46788 * 2 1 4 4 C 1.46493 * 120.00090 * 275.00074 * 3 2 1 5 5 C 1.50700 * 109.47739 * 275.00490 * 4 3 2 6 6 H 1.08004 * 119.99428 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00403 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46895 * 90.00394 * 9 7 5 11 11 H 1.48496 * 109.47542 * 210.00278 * 9 7 5 12 12 H 1.48499 * 109.46962 * 330.00557 * 9 7 5 13 13 S 1.65600 * 119.99496 * 95.00630 * 3 2 1 14 14 O 1.42103 * 106.39945 * 156.45573 * 13 3 2 15 15 O 1.42101 * 106.40349 * 23.54124 * 13 3 2 16 16 C 1.76193 * 107.21829 * 269.99427 * 13 3 2 17 17 N 1.29027 * 124.91563 * 0.31121 * 16 13 3 18 18 C 1.31784 * 117.12400 * 180.22480 * 17 16 13 19 19 C 1.33641 * 114.49781 * 359.48088 * 18 17 16 20 20 S 1.70983 * 124.91670 * 179.97438 * 16 13 3 21 21 H 1.09006 * 109.46855 * 299.99515 * 1 2 3 22 22 H 1.08994 * 109.47997 * 59.99330 * 1 2 3 23 23 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46344 * 240.00615 * 2 1 3 25 25 H 1.08991 * 109.47387 * 120.00277 * 2 1 3 26 26 H 1.09005 * 109.47158 * 35.00904 * 4 3 2 27 27 H 1.09001 * 109.46770 * 155.00264 * 4 3 2 28 28 H 0.97004 * 119.99733 * 179.97438 * 8 7 5 29 29 H 1.08002 * 122.75368 * 179.75456 * 18 17 16 30 30 H 1.08001 * 126.03830 * 180.26907 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4946 1.7890 -1.8824 6 1 4.1722 1.1118 -1.3837 7 6 3.8522 2.3608 -3.0850 8 7 3.0272 3.1857 -3.6920 9 14 5.5091 1.9649 -3.8514 10 1 5.3742 0.7814 -4.7381 11 1 5.9774 3.1283 -4.6465 12 1 6.4929 1.6702 -2.7787 13 16 2.4122 2.1201 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7097 1.0798 2.3498 16 6 0.9556 2.9117 2.0255 17 7 -0.1909 2.8919 1.4339 18 6 -1.1786 3.5417 2.0160 19 6 -0.8496 4.1340 3.1678 20 16 0.8547 3.8106 3.4765 21 1 -0.3633 0.5138 0.8901 22 1 -0.3635 0.5139 -0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.3615 1.8099 -1.9452 27 1 2.0920 3.1803 -1.0754 28 1 3.2790 3.5883 -4.5378 29 1 -2.1737 3.5879 1.5987 30 1 -1.5115 4.7090 3.7984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187875524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -22.205074 kcal Electronic energy + Delta-G solvation = -17766.791595 eV Core-core repulsion = 14816.626570 eV Total energy + Delta-G solvation = -2950.165025 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.59351 -36.75856 -36.04582 -35.38140 -32.63893 -30.63088 -29.91899 -26.59132 -25.83285 -23.07946 -21.76077 -21.19308 -19.13561 -17.97859 -16.92162 -16.39551 -16.18861 -15.76339 -15.05042 -14.69972 -14.26112 -13.86836 -13.74798 -13.21976 -12.87170 -12.10509 -11.95904 -11.75582 -11.67973 -11.66905 -11.48309 -11.42419 -10.97860 -10.85592 -10.45250 -10.35135 -9.96317 -9.81920 -9.72584 -9.70405 -9.27841 -8.41651 -8.07111 -6.03071 -4.07415 0.23561 0.72784 1.18762 1.44107 2.59828 3.33967 3.36242 3.40593 3.46974 4.10273 4.46349 4.53994 4.89028 5.07742 5.23392 5.31831 5.49154 5.80997 5.85393 5.88009 6.14396 6.36302 6.69337 6.76343 7.30665 7.38617 7.42858 7.63071 7.93920 8.22523 8.94942 9.57385 11.05474 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.006338 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.879154 B = 4416.540029 C = 4507.063958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.117 3.883 3 N -0.955 5.955 4 C 0.259 3.741 5 C -0.530 4.530 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.695 3.305 14 O -0.923 6.923 15 O -0.959 6.959 16 C -0.522 4.522 17 N -0.362 5.362 18 C 0.021 3.979 19 C -0.231 4.231 20 S 0.218 5.782 21 H 0.053 0.947 22 H 0.064 0.936 23 H 0.055 0.945 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.039 0.961 28 H 0.263 0.737 29 H 0.185 0.815 30 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.036 -0.444 12.594 15.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.009 4.009 3 N -0.797 5.797 4 C 0.137 3.863 5 C -0.569 4.569 6 H 0.080 0.920 7 C -0.140 4.140 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.196 1.196 13 S 2.773 3.227 14 O -0.912 6.912 15 O -0.949 6.949 16 C -0.874 4.874 17 N -0.079 5.079 18 C -0.135 4.135 19 C -0.371 4.371 20 S 0.469 5.531 21 H 0.072 0.928 22 H 0.083 0.917 23 H 0.074 0.926 24 H 0.108 0.892 25 H 0.095 0.905 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.202 0.798 30 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -7.605 -0.326 13.146 15.191 hybrid contribution -0.977 0.342 -0.865 1.350 sum -8.583 0.016 12.281 14.983 Atomic orbital electron populations 1.22226 0.96774 1.00950 1.02874 1.21252 0.93653 0.82326 1.03666 1.57150 1.80160 1.20946 1.21418 1.19128 0.97506 0.91301 0.78358 1.21503 1.02018 1.27827 1.05572 0.91964 1.24927 0.97383 0.94799 0.96862 1.69935 1.36127 1.30157 1.17148 0.86505 0.83973 0.77816 0.79219 1.20602 1.21109 1.19645 1.02610 0.72877 0.73842 0.73322 1.93666 1.56439 1.58129 1.83014 1.93553 1.82170 1.55276 1.63869 1.40688 1.20280 1.18891 1.07507 1.66475 0.97068 1.14623 1.29709 1.22289 1.00314 0.97595 0.93279 1.27521 0.98968 1.07594 1.03022 1.83690 1.06177 1.43424 1.19791 0.92761 0.91735 0.92608 0.89153 0.90510 0.94128 0.94332 0.92701 0.79835 0.79790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.61 10.24 37.16 0.38 -2.23 16 2 C 0.12 2.09 6.40 -4.04 -0.03 2.07 16 3 N -0.95 -20.41 2.74 -115.66 -0.32 -20.73 16 4 C 0.26 6.56 5.10 -5.20 -0.03 6.54 16 5 C -0.53 -14.80 9.38 -34.44 -0.32 -15.13 16 6 H 0.06 1.72 7.81 -52.48 -0.41 1.31 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 13 S 2.70 55.93 5.80 -107.50 -0.62 55.31 16 14 O -0.92 -22.16 16.99 -57.17 -0.97 -23.13 16 15 O -0.96 -19.90 16.57 -57.17 -0.95 -20.84 16 16 C -0.52 -9.16 7.37 51.58 0.38 -8.78 16 17 N -0.36 -6.00 9.24 -14.93 -0.14 -6.14 16 18 C 0.02 0.26 11.35 -19.18 -0.22 0.04 16 19 C -0.23 -2.46 11.37 29.12 0.33 -2.13 16 20 S 0.22 2.94 23.20 -107.50 -2.49 0.44 16 21 H 0.05 0.83 6.83 -51.93 -0.35 0.48 16 22 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 23 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.09 1.60 8.11 -51.93 -0.42 1.18 16 25 H 0.08 1.28 6.91 -51.93 -0.36 0.92 16 26 H 0.04 1.04 8.11 -51.93 -0.42 0.62 16 27 H 0.04 1.05 7.61 -51.93 -0.40 0.66 16 28 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 29 H 0.18 1.70 8.06 -52.49 -0.42 1.27 16 30 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 291.44 15.07 4.39 4.39 Total: -1.00 -32.93 291.44 -8.17 -41.10 By element: Atomic # 1 Polarization: -0.53 SS G_CDS: -3.19 Total: -3.71 kcal Atomic # 6 Polarization: -18.35 SS G_CDS: 0.40 Total: -17.95 kcal Atomic # 7 Polarization: -52.62 SS G_CDS: 0.28 Total: -52.33 kcal Atomic # 8 Polarization: -42.06 SS G_CDS: -1.92 Total: -43.98 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 58.87 SS G_CDS: -3.12 Total: 55.75 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -32.93 -8.17 -41.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187875524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.892 kcal (2) G-P(sol) polarization free energy of solvation -32.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds