Wall clock time and date at job start Mon Mar 30 2020 02:00:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46788 * 2 1 4 4 C 1.46493 * 120.00090 * 275.00074 * 3 2 1 5 5 C 1.50700 * 109.47739 * 275.00490 * 4 3 2 6 6 H 1.08004 * 119.99428 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00403 * 179.97438 * 5 4 3 8 8 N 1.31518 * 119.99834 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00176 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.46895 * 90.00394 * 9 7 5 11 11 H 1.48496 * 109.47542 * 210.00278 * 9 7 5 12 12 H 1.48499 * 109.46962 * 330.00557 * 9 7 5 13 13 S 1.65600 * 119.99496 * 95.00630 * 3 2 1 14 14 O 1.42103 * 106.39945 * 156.45573 * 13 3 2 15 15 O 1.42101 * 106.40349 * 23.54124 * 13 3 2 16 16 C 1.76193 * 107.21829 * 269.99427 * 13 3 2 17 17 N 1.29027 * 124.91563 * 0.31121 * 16 13 3 18 18 C 1.31784 * 117.12400 * 180.22480 * 17 16 13 19 19 C 1.33641 * 114.49781 * 359.48088 * 18 17 16 20 20 S 1.70983 * 124.91670 * 179.97438 * 16 13 3 21 21 H 1.09006 * 109.46855 * 299.99515 * 1 2 3 22 22 H 1.08994 * 109.47997 * 59.99330 * 1 2 3 23 23 H 1.09001 * 109.47083 * 180.02562 * 1 2 3 24 24 H 1.09006 * 109.46344 * 240.00615 * 2 1 3 25 25 H 1.08991 * 109.47387 * 120.00277 * 2 1 3 26 26 H 1.09005 * 109.47158 * 35.00904 * 4 3 2 27 27 H 1.09001 * 109.46770 * 155.00264 * 4 3 2 28 28 H 0.97004 * 119.99733 * 179.97438 * 8 7 5 29 29 H 1.08002 * 122.75368 * 179.75456 * 18 17 16 30 30 H 1.08001 * 126.03830 * 180.26907 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1581 2.1088 -1.2638 5 6 3.4946 1.7890 -1.8824 6 1 4.1722 1.1118 -1.3837 7 6 3.8522 2.3608 -3.0850 8 7 3.0272 3.1857 -3.6920 9 14 5.5091 1.9649 -3.8514 10 1 5.3742 0.7814 -4.7381 11 1 5.9774 3.1283 -4.6465 12 1 6.4929 1.6702 -2.7787 13 16 2.4122 2.1201 1.4287 14 8 3.3284 3.1570 1.1050 15 8 2.7097 1.0798 2.3498 16 6 0.9556 2.9117 2.0255 17 7 -0.1909 2.8919 1.4339 18 6 -1.1786 3.5417 2.0160 19 6 -0.8496 4.1340 3.1678 20 16 0.8547 3.8106 3.4765 21 1 -0.3633 0.5138 0.8901 22 1 -0.3635 0.5139 -0.8898 23 1 -0.3633 -1.0277 0.0005 24 1 1.8932 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 1.3615 1.8099 -1.9452 27 1 2.0920 3.1803 -1.0754 28 1 3.2790 3.5883 -4.5378 29 1 -2.1737 3.5879 1.5987 30 1 -1.5115 4.7090 3.7984 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187875524.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:27 Heat of formation + Delta-G solvation = -47.183088 kcal Electronic energy + Delta-G solvation = -17767.874723 eV Core-core repulsion = 14816.626570 eV Total energy + Delta-G solvation = -2951.248153 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.68296 -38.42996 -37.72899 -37.07744 -34.71072 -31.69294 -31.51868 -28.52977 -26.98275 -24.94709 -23.35399 -22.33050 -20.32184 -19.57968 -18.57149 -18.27709 -17.65999 -17.41528 -16.48103 -16.10238 -15.71855 -15.40347 -14.90345 -14.65730 -14.58499 -13.88212 -13.61659 -13.40611 -13.35010 -13.14272 -13.02264 -12.74194 -12.70320 -12.65541 -12.22816 -12.15074 -11.73905 -11.61277 -10.95713 -10.75691 -10.57536 -10.36176 -9.83136 -8.18413 -6.30945 -0.86522 -0.78682 0.02853 0.44193 1.41503 1.43892 1.54596 1.56283 1.79672 2.42514 2.56130 3.12538 3.46703 3.49084 3.98851 4.17108 4.31559 4.47155 4.49796 4.75116 4.97196 5.02901 5.16705 5.21608 5.47469 5.52141 5.71771 5.91443 6.10560 6.32960 6.77581 7.37838 8.89629 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.025661 B = 0.006338 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.879154 B = 4416.540029 C = 4507.063958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.108 3.892 3 N -0.966 5.966 4 C 0.279 3.721 5 C -0.550 4.550 6 H 0.058 0.942 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.960 3.040 10 H -0.264 1.264 11 H -0.279 1.279 12 H -0.272 1.272 13 S 2.709 3.291 14 O -0.971 6.971 15 O -0.969 6.969 16 C -0.576 4.576 17 N -0.378 5.378 18 C -0.002 4.002 19 C -0.184 4.184 20 S 0.241 5.759 21 H 0.055 0.945 22 H 0.050 0.950 23 H 0.087 0.913 24 H 0.086 0.914 25 H 0.088 0.912 26 H 0.030 0.970 27 H 0.010 0.990 28 H 0.267 0.733 29 H 0.219 0.781 30 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.538 -0.339 13.836 17.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.807 5.807 4 C 0.156 3.844 5 C -0.589 4.589 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.784 3.216 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.196 1.196 13 S 2.794 3.206 14 O -0.961 6.961 15 O -0.959 6.959 16 C -0.929 4.929 17 N -0.096 5.096 18 C -0.157 4.157 19 C -0.324 4.324 20 S 0.491 5.509 21 H 0.074 0.926 22 H 0.070 0.930 23 H 0.105 0.895 24 H 0.104 0.896 25 H 0.106 0.894 26 H 0.048 0.952 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.235 0.765 30 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges -9.053 -0.286 14.366 16.983 hybrid contribution -0.703 0.403 -1.079 1.349 sum -9.756 0.117 13.288 16.485 Atomic orbital electron populations 1.22137 0.94671 1.02766 1.02243 1.21495 0.95486 0.80678 1.03995 1.56997 1.81080 1.22271 1.20352 1.18587 0.96106 0.90020 0.79709 1.21850 1.03091 1.27872 1.06078 0.92423 1.25782 1.01041 0.94596 0.97374 1.70037 1.37911 1.30969 1.17617 0.85527 0.79397 0.78219 0.78411 1.18945 1.20474 1.19640 1.01565 0.73141 0.73115 0.72809 1.93599 1.59542 1.59312 1.83648 1.93523 1.83162 1.55630 1.63604 1.39471 1.19688 1.23057 1.10732 1.66436 0.97443 1.15194 1.30573 1.22858 1.00834 0.97851 0.94180 1.28194 0.97454 1.04729 1.02013 1.83587 1.08452 1.41826 1.17068 0.92626 0.93046 0.89473 0.89571 0.89370 0.95161 0.97185 0.92385 0.76475 0.74566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.82 10.24 71.98 0.74 -4.08 16 2 C 0.11 3.92 6.40 86.38 0.55 4.47 16 3 N -0.97 -42.76 2.74 -519.84 -1.42 -44.18 16 4 C 0.28 14.80 5.10 85.63 0.44 15.24 16 5 C -0.55 -31.70 9.38 25.60 0.24 -31.46 16 6 H 0.06 3.28 7.81 -2.91 -0.02 3.26 16 7 C 0.01 0.66 5.46 84.65 0.46 1.12 16 8 N -0.93 -55.37 13.29 21.45 0.28 -55.08 16 9 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 10 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 12 H -0.27 -12.63 7.11 99.48 0.71 -11.92 16 13 S 2.71 116.14 5.80 -56.49 -0.33 115.81 16 14 O -0.97 -49.00 16.99 -128.00 -2.17 -51.18 16 15 O -0.97 -41.03 16.57 -128.00 -2.12 -43.15 16 16 C -0.58 -20.06 7.37 130.65 0.96 -19.09 16 17 N -0.38 -12.13 9.24 -201.14 -1.86 -13.99 16 18 C 0.00 -0.05 11.35 83.66 0.95 0.90 16 19 C -0.18 -3.09 11.37 66.78 0.76 -2.33 16 20 S 0.24 6.01 23.20 -56.49 -1.31 4.70 16 21 H 0.05 1.66 6.83 -2.38 -0.02 1.65 16 22 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 24 H 0.09 3.13 8.11 -2.38 -0.02 3.11 16 25 H 0.09 2.95 6.91 -2.39 -0.02 2.93 16 26 H 0.03 1.64 8.11 -2.38 -0.02 1.62 16 27 H 0.01 0.59 7.61 -2.39 -0.02 0.57 16 28 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.22 3.11 8.06 -2.91 -0.02 3.08 16 30 H 0.24 1.41 8.06 -2.91 -0.02 1.38 16 Total: -1.00 -74.02 291.44 -0.65 -74.68 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 1.15 Total: 0.57 kcal Atomic # 6 Polarization: -40.33 SS G_CDS: 5.10 Total: -35.23 kcal Atomic # 7 Polarization: -110.25 SS G_CDS: -3.00 Total: -113.25 kcal Atomic # 8 Polarization: -90.03 SS G_CDS: -4.30 Total: -94.33 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: 122.15 SS G_CDS: -1.64 Total: 120.52 kcal Total: -74.02 -0.65 -74.68 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187875524.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.493 kcal (2) G-P(sol) polarization free energy of solvation -74.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds