Wall clock time and date at job start Mon Mar 30 2020 01:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 120.00287 * 2 1 4 4 H 1.48496 * 109.46881 * 269.99787 * 3 2 1 5 5 H 1.48498 * 109.46888 * 29.99282 * 3 2 1 6 6 H 1.48494 * 109.47439 * 149.99558 * 3 2 1 7 7 C 1.37881 * 120.00018 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99728 * 0.02562 * 7 2 1 9 9 S 1.76199 * 120.00203 * 180.02562 * 7 2 1 10 10 O 1.42099 * 106.40037 * 66.46070 * 9 7 2 11 11 O 1.42092 * 106.40121 * 293.54192 * 9 7 2 12 12 N 1.65597 * 107.21869 * 180.02562 * 9 7 2 13 13 C 1.46492 * 120.00089 * 64.99716 * 12 9 7 14 14 C 1.50704 * 109.47252 * 165.00072 * 13 12 9 15 15 C 1.38164 * 119.60958 * 94.99850 * 14 13 12 16 16 C 1.38785 * 119.14242 * 179.72443 * 15 14 13 17 17 Cl 1.73596 * 120.80224 * 180.25737 * 16 15 14 18 18 C 1.38820 * 118.39308 * 0.27849 * 16 15 14 19 19 C 1.38127 * 119.14308 * 0.02562 * 18 16 15 20 20 N 1.31882 * 119.61150 * 275.31663 * 14 13 12 21 21 H 0.97000 * 119.99984 * 0.02562 * 1 2 3 22 22 H 0.97004 * 119.99927 * 245.00641 * 12 9 7 23 23 H 1.09002 * 109.46916 * 45.00568 * 13 12 9 24 24 H 1.08998 * 109.47587 * 285.00383 * 13 12 9 25 25 H 1.08002 * 120.43184 * 0.02562 * 15 14 13 26 26 H 1.07994 * 120.42768 * 180.02562 * 18 16 15 27 27 H 1.08008 * 119.60607 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7665 -1.1941 0.0012 10 8 4.1673 -0.6495 1.2510 11 8 4.1682 -0.6500 -1.2484 12 7 4.2567 -2.7759 0.0011 13 6 3.9617 -3.6340 -1.1490 14 6 4.8076 -4.8792 -1.0768 15 6 4.2887 -6.0247 -0.5045 16 6 5.0741 -7.1676 -0.4483 17 17 4.4631 -8.6323 0.2552 18 6 6.3602 -7.1109 -0.9677 19 6 6.8116 -5.9274 -1.5185 20 7 6.0366 -4.8608 -1.5548 21 1 -0.4850 0.8400 -0.0004 22 1 4.7390 -3.1343 0.7626 23 1 4.1851 -3.0961 -2.0704 24 1 2.9073 -3.9098 -1.1357 25 1 3.2831 -6.0322 -0.1105 26 1 6.9994 -7.9810 -0.9415 27 1 7.8112 -5.8749 -1.9244 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192933209.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:20 Heat of formation + Delta-G solvation = -77.735449 kcal Electronic energy + Delta-G solvation = -16630.425086 eV Core-core repulsion = 13539.975283 eV Total energy + Delta-G solvation = -3090.449804 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.36350 -37.83409 -37.67701 -36.48539 -36.36176 -35.16404 -33.19680 -32.29931 -28.55443 -27.33074 -24.66284 -23.16644 -21.13449 -19.49015 -18.78520 -18.24515 -17.83245 -17.20382 -16.87123 -16.39295 -15.81467 -15.40733 -15.12336 -15.05673 -14.88133 -14.38254 -14.10930 -13.54817 -13.40358 -13.19745 -13.11676 -12.80900 -12.68817 -12.54809 -12.02261 -11.81763 -11.31704 -11.22752 -10.61605 -10.53553 -10.34780 -10.21040 -8.94534 -7.50251 -0.23191 -0.00115 0.24886 0.86849 1.07506 1.16893 1.24386 1.91518 2.40724 2.46457 2.78017 3.08403 3.35623 3.59193 3.81959 3.94947 4.16923 4.26476 4.36515 4.56816 4.68785 4.79769 4.87439 4.90601 5.40345 5.48629 6.03798 6.19319 6.56263 6.88279 8.22592 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.034375 B = 0.004652 C = 0.004316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.354326 B = 6017.701832 C = 6486.412092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.110 3.890 3 Si 0.822 3.178 4 H -0.239 1.239 5 H -0.222 1.222 6 H -0.230 1.230 7 C -1.034 5.034 8 H 0.114 0.886 9 S 2.701 3.299 10 O -1.028 7.028 11 O -1.027 7.027 12 N -1.104 6.104 13 C 0.168 3.832 14 C 0.124 3.876 15 C -0.151 4.151 16 C -0.001 4.001 17 Cl -0.044 7.044 18 C -0.150 4.150 19 C 0.111 3.889 20 N -0.495 5.495 21 H 0.291 0.709 22 H 0.418 0.582 23 H 0.086 0.914 24 H 0.097 0.903 25 H 0.158 0.842 26 H 0.179 0.821 27 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.433 -16.600 -1.673 19.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C -0.107 4.107 3 Si 0.640 3.360 4 H -0.163 1.163 5 H -0.144 1.144 6 H -0.152 1.152 7 C -1.167 5.167 8 H 0.132 0.868 9 S 2.801 3.199 10 O -1.018 7.018 11 O -1.017 7.017 12 N -0.864 5.864 13 C 0.042 3.958 14 C -0.014 4.014 15 C -0.173 4.173 16 C -0.036 4.036 17 Cl -0.015 7.015 18 C -0.170 4.170 19 C -0.046 4.046 20 N -0.206 5.206 21 H 0.102 0.898 22 H 0.252 0.748 23 H 0.104 0.896 24 H 0.115 0.885 25 H 0.176 0.824 26 H 0.196 0.804 27 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 10.967 -15.045 -2.140 18.741 hybrid contribution -0.986 -0.601 0.782 1.395 sum 9.981 -15.646 -1.359 18.609 Atomic orbital electron populations 1.70002 1.07363 1.30443 1.40403 1.25111 0.95581 1.01322 0.88650 0.87526 0.82881 0.83066 0.82562 1.16269 1.14377 1.15248 1.30920 1.17620 1.01920 1.66255 0.86834 1.00446 0.75858 0.71290 0.72318 1.93441 1.85374 1.77124 1.45880 1.93382 1.84754 1.77253 1.46292 1.54971 1.74040 1.29938 1.27421 1.20152 0.98259 0.88110 0.89303 1.21009 0.91420 0.94086 0.94927 1.22101 1.02729 0.91757 1.00687 1.21442 0.95190 0.88755 0.98206 1.98406 1.87542 1.33482 1.82086 1.22501 0.94508 1.01604 0.98396 1.23437 1.00349 0.86538 0.94290 1.67513 1.04991 1.31785 1.16279 0.89848 0.74820 0.89574 0.88529 0.82406 0.80392 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -48.68 13.96 21.45 0.30 -48.38 15 2 C 0.11 6.26 5.47 84.66 0.46 6.73 15 3 Si 0.82 40.91 26.54 68.60 1.82 42.73 15 4 H -0.24 -11.57 7.11 99.48 0.71 -10.86 15 5 H -0.22 -9.74 7.11 99.48 0.71 -9.04 15 6 H -0.23 -11.79 5.61 99.48 0.56 -11.23 15 7 C -1.03 -56.76 10.26 67.74 0.69 -56.06 15 8 H 0.11 6.23 8.06 -2.91 -0.02 6.20 15 9 S 2.70 132.50 4.24 -56.49 -0.24 132.26 15 10 O -1.03 -54.47 16.02 -128.00 -2.05 -56.52 15 11 O -1.03 -54.26 16.30 -128.00 -2.09 -56.35 15 12 N -1.10 -41.23 5.99 -190.80 -1.14 -42.38 15 13 C 0.17 5.49 6.53 85.64 0.56 6.05 15 14 C 0.12 3.38 6.17 42.53 0.26 3.64 15 15 C -0.15 -3.41 9.55 22.38 0.21 -3.19 15 16 C 0.00 -0.02 6.37 22.54 0.14 0.12 15 17 Cl -0.04 -0.74 29.02 -2.72 -0.08 -0.82 15 18 C -0.15 -2.25 9.94 22.38 0.22 -2.03 15 19 C 0.11 2.00 11.18 84.66 0.95 2.95 15 20 N -0.50 -13.19 10.27 -183.94 -1.89 -15.08 15 21 H 0.29 15.01 8.31 -92.71 -0.77 14.24 15 22 H 0.42 13.60 8.65 -96.74 -0.84 12.77 15 23 H 0.09 3.02 7.75 -2.39 -0.02 3.00 15 24 H 0.10 2.86 8.04 -2.39 -0.02 2.84 15 25 H 0.16 3.21 8.06 -2.91 -0.02 3.18 15 26 H 0.18 1.45 8.06 -2.91 -0.02 1.43 15 27 H 0.20 2.09 8.06 -2.91 -0.02 2.07 15 Total: -1.00 -70.12 272.60 -1.63 -71.75 By element: Atomic # 1 Polarization: 14.37 SS G_CDS: 0.23 Total: 14.60 kcal Atomic # 6 Polarization: -45.31 SS G_CDS: 3.51 Total: -41.80 kcal Atomic # 7 Polarization: -103.11 SS G_CDS: -2.73 Total: -105.84 kcal Atomic # 8 Polarization: -108.73 SS G_CDS: -4.14 Total: -112.87 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 1.82 Total: 42.73 kcal Atomic # 16 Polarization: 132.50 SS G_CDS: -0.24 Total: 132.26 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -70.12 -1.63 -71.75 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933209.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.990 kcal (2) G-P(sol) polarization free energy of solvation -70.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds