Wall clock time and date at job start Mon Mar 30 2020 01:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00366 * 2 1 4 4 H 1.48494 * 109.47163 * 270.00020 * 3 2 1 5 5 H 1.48496 * 109.46818 * 30.00026 * 3 2 1 6 6 H 1.48499 * 109.46944 * 149.99567 * 3 2 1 7 7 C 1.37877 * 119.99825 * 179.97438 * 2 1 3 8 8 H 1.08009 * 120.00064 * 0.02562 * 7 2 1 9 9 S 1.76200 * 120.00183 * 180.02562 * 7 2 1 10 10 O 1.42098 * 106.40350 * 66.46280 * 9 7 2 11 11 O 1.42103 * 106.40112 * 293.54494 * 9 7 2 12 12 N 1.65599 * 107.22098 * 180.02562 * 9 7 2 13 13 C 1.46504 * 120.00102 * 64.99482 * 12 9 7 14 14 C 1.50696 * 109.47119 * 165.00154 * 13 12 9 15 15 C 1.38714 * 120.78567 * 269.98084 * 14 13 12 16 16 C 1.38143 * 119.19787 * 180.02562 * 15 14 13 17 17 N 1.31904 * 120.77996 * 0.02562 * 16 15 14 18 18 C 1.31950 * 121.70670 * 359.68219 * 17 16 15 19 19 Cl 1.73608 * 119.63367 * 180.28810 * 18 17 16 20 20 C 1.38393 * 120.73265 * 0.58300 * 18 17 16 21 21 H 0.97002 * 119.99710 * 359.97438 * 1 2 3 22 22 H 0.96995 * 120.00118 * 245.00402 * 12 9 7 23 23 H 1.09004 * 109.46593 * 45.00676 * 13 12 9 24 24 H 1.08994 * 109.47447 * 285.00851 * 13 12 9 25 25 H 1.08000 * 120.39950 * 359.97438 * 15 14 13 26 26 H 1.07998 * 119.60887 * 179.97438 * 16 15 14 27 27 H 1.08002 * 120.43045 * 179.73537 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 16 3.7664 -1.1942 0.0012 10 8 4.1673 -0.6496 1.2510 11 8 4.1682 -0.6499 -1.2485 12 7 4.2566 -2.7760 0.0011 13 6 3.9616 -3.6342 -1.1491 14 6 4.8074 -4.8793 -1.0768 15 6 6.0611 -4.9213 -1.6689 16 6 6.8085 -6.0799 -1.5831 17 7 6.3428 -7.1380 -0.9480 18 6 5.1576 -7.1328 -0.3681 19 17 4.6008 -8.5535 0.4599 20 6 4.3508 -6.0095 -0.4178 21 1 -0.4850 0.8401 0.0004 22 1 4.7389 -3.1343 0.7625 23 1 4.1849 -3.0962 -2.0705 24 1 2.9072 -3.9099 -1.1358 25 1 6.4479 -4.0589 -2.1915 26 1 7.7853 -6.1200 -2.0420 27 1 3.3798 -6.0120 0.0549 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192933420.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:28 Heat of formation + Delta-G solvation = -53.889374 kcal Electronic energy + Delta-G solvation = -16627.352732 eV Core-core repulsion = 13537.936972 eV Total energy + Delta-G solvation = -3089.415760 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44679 -36.84408 -35.86240 -35.44295 -34.52600 -33.09769 -31.99700 -31.20950 -26.54856 -26.19819 -23.75178 -22.15018 -19.27724 -17.65391 -17.38311 -16.87800 -16.59630 -15.92846 -15.47247 -15.11729 -14.52320 -14.39943 -13.88577 -13.45675 -13.22175 -12.87760 -12.72155 -11.98501 -11.89090 -11.60712 -11.45281 -11.42138 -10.91114 -10.72156 -10.58234 -10.10510 -9.85172 -9.76294 -9.38891 -9.26760 -9.16821 -8.73158 -6.86331 -5.41591 0.74498 0.86789 1.64380 2.00254 3.03410 3.13374 3.22302 3.43341 3.90153 4.23118 4.28133 4.42257 4.55010 4.72561 4.85407 4.98472 5.21958 5.36392 5.54565 5.59658 5.78958 5.98427 6.16232 6.29400 6.38361 7.40615 7.49694 7.54743 8.12993 8.64190 10.25815 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.034406 B = 0.004628 C = 0.004314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.612244 B = 6049.035200 C = 6488.464683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.153 3.847 3 Si 0.802 3.198 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.017 5.017 8 H 0.122 0.878 9 S 2.676 3.324 10 O -1.005 7.005 11 O -1.009 7.009 12 N -1.121 6.121 13 C 0.163 3.837 14 C -0.032 4.032 15 C -0.153 4.153 16 C 0.115 3.885 17 N -0.481 5.481 18 C 0.172 3.828 19 Cl -0.035 7.035 20 C -0.139 4.139 21 H 0.281 0.719 22 H 0.407 0.593 23 H 0.095 0.905 24 H 0.082 0.918 25 H 0.148 0.852 26 H 0.167 0.833 27 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.692 -11.666 -2.640 14.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.067 4.067 3 Si 0.622 3.378 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.151 5.151 8 H 0.140 0.860 9 S 2.778 3.222 10 O -0.995 6.995 11 O -0.999 6.999 12 N -0.876 5.876 13 C 0.036 3.964 14 C -0.041 4.041 15 C -0.174 4.174 16 C -0.042 4.042 17 N -0.193 5.193 18 C 0.007 3.993 19 Cl -0.006 7.006 20 C -0.161 4.161 21 H 0.092 0.908 22 H 0.239 0.761 23 H 0.113 0.887 24 H 0.100 0.900 25 H 0.166 0.834 26 H 0.184 0.816 27 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.452 -11.646 -2.696 15.239 hybrid contribution -0.845 0.787 0.386 1.217 sum 8.607 -10.858 -2.311 14.047 Atomic orbital electron populations 1.69981 1.06602 1.29142 1.39315 1.24425 0.94798 0.98846 0.88606 0.87849 0.83564 0.84507 0.81840 1.16971 1.17889 1.14231 1.30417 1.15455 1.02228 1.67005 0.86014 1.01384 0.77358 0.70176 0.73331 1.93488 1.85539 1.75471 1.44991 1.93408 1.85072 1.75831 1.45597 1.55583 1.74561 1.31278 1.26214 1.20100 0.98119 0.87615 0.90556 1.20500 0.94728 0.95013 0.93901 1.22323 0.94549 1.00136 1.00350 1.22679 0.99622 0.87302 0.94583 1.66988 1.13095 1.30380 1.08817 1.21616 0.91901 0.88926 0.96811 1.98407 1.87360 1.39171 1.75673 1.21893 1.01796 0.91709 1.00672 0.90820 0.76119 0.88707 0.89960 0.83376 0.81615 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.07 13.96 55.43 0.77 -22.29 15 2 C 0.15 4.25 5.47 -17.82 -0.10 4.16 15 3 Si 0.80 19.98 26.54 -169.99 -4.51 15.47 15 4 H -0.25 -5.97 7.11 56.52 0.40 -5.57 15 5 H -0.25 -5.86 7.11 56.52 0.40 -5.46 15 6 H -0.22 -5.58 5.61 56.52 0.32 -5.26 15 7 C -1.02 -26.95 10.26 30.60 0.31 -26.64 15 8 H 0.12 3.22 8.06 -52.48 -0.42 2.80 15 9 S 2.68 62.48 4.24 -107.50 -0.46 62.03 15 10 O -1.00 -25.79 16.02 -57.17 -0.92 -26.70 15 11 O -1.01 -25.10 16.30 -57.17 -0.93 -26.04 15 12 N -1.12 -19.34 5.99 -11.66 -0.07 -19.41 15 13 C 0.16 2.36 6.40 -5.19 -0.03 2.33 15 14 C -0.03 -0.39 5.31 -104.33 -0.55 -0.94 15 15 C -0.15 -1.64 9.82 -39.44 -0.39 -2.02 15 16 C 0.11 1.18 11.18 -17.56 -0.20 0.98 15 17 N -0.48 -6.01 10.34 -10.36 -0.11 -6.12 15 18 C 0.17 2.13 7.27 -17.44 -0.13 2.00 15 19 Cl -0.03 -0.39 29.11 -51.86 -1.51 -1.90 15 20 C -0.14 -1.66 9.59 -39.40 -0.38 -2.04 15 21 H 0.28 7.17 8.31 -40.82 -0.34 6.83 15 22 H 0.41 6.15 8.64 -34.47 -0.30 5.85 15 23 H 0.09 1.36 7.71 -51.93 -0.40 0.96 15 24 H 0.08 1.15 8.10 -51.93 -0.42 0.72 15 25 H 0.15 1.34 8.06 -52.49 -0.42 0.91 15 26 H 0.17 1.16 8.06 -52.49 -0.42 0.73 15 27 H 0.15 1.61 8.06 -52.49 -0.42 1.18 15 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -32.21 272.60 -7.11 -39.32 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -2.03 Total: 3.71 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: -1.46 Total: -22.18 kcal Atomic # 7 Polarization: -48.42 SS G_CDS: 0.60 Total: -47.82 kcal Atomic # 8 Polarization: -50.89 SS G_CDS: -1.85 Total: -52.74 kcal Atomic # 14 Polarization: 19.98 SS G_CDS: -4.51 Total: 15.47 kcal Atomic # 16 Polarization: 62.48 SS G_CDS: -0.46 Total: 62.03 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.51 Total: -1.90 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -32.21 -7.11 -39.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192933420.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.568 kcal (2) G-P(sol) polarization free energy of solvation -32.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.781 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds