Wall clock time and date at job start Mon Mar 30 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37885 * 120.45145 * 2 1 4 4 N 1.32003 * 120.86157 * 180.02562 * 3 2 1 5 5 C 1.32112 * 121.88701 * 0.02562 * 4 3 2 6 6 Cl 1.73602 * 119.59231 * 179.97438 * 5 4 3 7 7 C 1.38043 * 120.81001 * 359.73264 * 5 4 3 8 8 C 1.39428 * 119.05753 * 0.51446 * 7 5 4 9 9 N 1.39175 * 120.85626 * 179.77211 * 8 7 5 10 10 S 1.65597 * 119.99808 * 34.72311 * 9 8 7 11 11 O 1.42102 * 106.40060 * 178.54028 * 10 9 8 12 12 O 1.42101 * 106.40207 * 311.45334 * 10 9 8 13 13 C 1.76194 * 107.22327 * 64.99742 * 10 9 8 14 14 H 1.08011 * 119.99735 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00285 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99859 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00070 * 359.97438 * 15 13 10 18 18 H 1.48509 * 109.46858 * 90.00172 * 17 15 13 19 19 H 1.48497 * 109.47330 * 209.99881 * 17 15 13 20 20 H 1.48497 * 109.47165 * 330.00454 * 17 15 13 21 21 H 1.08997 * 109.47425 * 269.97700 * 1 2 3 22 22 H 1.08998 * 109.47200 * 29.98276 * 1 2 3 23 23 H 1.09004 * 109.46754 * 149.97661 * 1 2 3 24 24 H 1.08005 * 119.57068 * 0.04336 * 3 2 1 25 25 H 1.08004 * 120.46781 * 180.28527 * 7 5 4 26 26 H 0.96995 * 120.00033 * 214.44370 * 9 8 7 27 27 H 0.97004 * 119.99840 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1886 0.0000 4 7 3.5258 1.1981 -0.0005 5 6 4.2317 0.0814 -0.0015 6 17 5.9657 0.1633 -0.0028 7 6 3.6073 -1.1498 0.0034 8 6 2.2140 -1.2025 -0.0014 9 7 1.5459 -2.4234 -0.0014 10 16 2.1795 -3.7140 0.8202 11 8 1.2591 -4.7843 0.6573 12 8 3.5461 -3.7996 0.4404 13 6 2.1641 -3.3006 2.5329 14 1 1.7824 -2.3425 2.8538 15 6 2.6401 -4.1998 3.4634 16 7 2.6290 -3.8910 4.7417 17 14 3.3008 -5.8565 2.9085 18 1 4.7569 -5.7437 2.6393 19 1 3.0712 -6.8636 3.9754 20 1 2.5997 -6.2792 1.6696 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6661 2.1242 0.0007 25 1 4.1898 -2.0592 0.0072 26 1 0.7070 -2.5171 -0.4793 27 1 2.9642 -4.5234 5.3964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:07 Heat of formation + Delta-G solvation = -52.529907 kcal Electronic energy + Delta-G solvation = -17385.568555 eV Core-core repulsion = 14296.211746 eV Total energy + Delta-G solvation = -3089.356809 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.24188 -36.56291 -36.09223 -35.48279 -34.80272 -33.19456 -32.54474 -30.18998 -26.99977 -26.59365 -23.35655 -21.93040 -19.55836 -18.22267 -17.91238 -17.12868 -16.11033 -15.45098 -15.10229 -14.75075 -14.39794 -14.16370 -13.61291 -13.59250 -13.02393 -13.01922 -12.53429 -12.09200 -11.89240 -11.59581 -11.38210 -11.16507 -11.04188 -10.90445 -10.79834 -10.56756 -10.08221 -9.39519 -9.34714 -9.31948 -8.70115 -8.39266 -6.94211 -5.52864 1.11523 1.30505 1.69649 2.07158 2.96902 3.07450 3.14077 3.77195 3.81671 3.84643 4.44365 4.67392 4.83160 4.92354 5.02670 5.18635 5.25830 5.62835 5.74844 5.82573 5.89553 5.96736 6.14722 6.54881 6.69693 7.24901 7.33428 7.93005 8.04190 8.53336 10.17633 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.008016 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.920411 B = 3492.008707 C = 4116.600517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.170 4.170 3 C 0.132 3.868 4 N -0.498 5.498 5 C 0.194 3.806 6 Cl -0.033 7.033 7 C -0.196 4.196 8 C 0.237 3.763 9 N -1.049 6.049 10 S 2.661 3.339 11 O -0.991 6.991 12 O -0.995 6.995 13 C -1.010 5.010 14 H 0.124 0.876 15 C 0.155 3.845 16 N -0.813 5.813 17 Si 0.801 3.199 18 H -0.242 1.242 19 H -0.252 1.252 20 H -0.221 1.221 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.065 0.935 24 H 0.164 0.836 25 H 0.190 0.810 26 H 0.420 0.580 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 7.020 -8.449 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.176 4.176 3 C -0.025 4.025 4 N -0.211 5.211 5 C 0.030 3.970 6 Cl -0.005 7.005 7 C -0.220 4.220 8 C 0.129 3.871 9 N -0.792 5.792 10 S 2.764 3.236 11 O -0.982 6.982 12 O -0.985 6.985 13 C -1.145 5.145 14 H 0.142 0.858 15 C -0.066 4.066 16 N -0.442 5.442 17 Si 0.620 3.380 18 H -0.166 1.166 19 H -0.176 1.176 20 H -0.144 1.144 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.084 0.916 24 H 0.181 0.819 25 H 0.207 0.793 26 H 0.256 0.744 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.927 6.903 -8.600 11.067 hybrid contribution -0.504 -1.075 0.446 1.268 sum -1.431 5.829 -8.154 10.125 Atomic orbital electron populations 1.20611 0.89668 1.02689 1.03195 1.20852 0.97988 0.92810 1.05986 1.22273 0.88044 0.97129 0.95069 1.66995 1.08337 1.30350 1.15393 1.21214 0.87155 0.89383 0.99209 1.98383 1.07009 1.98624 1.96487 1.22785 0.93880 1.01070 1.04299 1.17319 0.90360 0.85763 0.93611 1.53608 1.35836 1.24055 1.65740 1.02064 0.73405 0.70966 0.77120 1.93516 1.64840 1.51311 1.88494 1.93334 1.35107 1.84828 1.85191 1.30156 1.57114 1.14568 1.12701 0.85815 1.24385 0.90259 0.97655 0.94275 1.69967 1.36903 1.36286 1.01006 0.87874 0.83136 0.83838 0.83146 1.16585 1.17571 1.14354 0.90250 0.90996 0.91587 0.81871 0.79346 0.74423 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.14 9.82 36.00 0.35 -0.78 15 2 C -0.17 -2.47 5.91 -104.29 -0.62 -3.09 15 3 C 0.13 1.85 10.85 -17.61 -0.19 1.66 15 4 N -0.50 -8.30 10.34 -10.45 -0.11 -8.40 15 5 C 0.19 3.47 7.27 -17.50 -0.13 3.34 15 6 Cl -0.03 -0.55 29.10 -51.86 -1.51 -2.06 15 7 C -0.20 -3.76 9.06 -39.21 -0.36 -4.11 15 8 C 0.24 4.21 6.36 -83.62 -0.53 3.68 15 9 N -1.05 -18.90 5.51 32.53 0.18 -18.72 15 10 S 2.66 62.16 4.08 -107.50 -0.44 61.72 15 11 O -0.99 -24.76 16.02 -57.17 -0.92 -25.67 15 12 O -0.99 -24.30 13.57 -57.17 -0.78 -25.08 15 13 C -1.01 -26.91 10.22 30.60 0.31 -26.60 15 14 H 0.12 3.38 8.06 -52.48 -0.42 2.95 15 15 C 0.16 4.28 5.47 -17.82 -0.10 4.18 15 16 N -0.81 -22.71 13.96 55.43 0.77 -21.93 15 17 Si 0.80 19.61 26.54 -169.99 -4.51 15.10 15 18 H -0.24 -5.79 7.11 56.52 0.40 -5.39 15 19 H -0.25 -5.68 7.11 56.52 0.40 -5.28 15 20 H -0.22 -5.47 5.61 56.52 0.32 -5.16 15 21 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.07 0.58 8.09 -51.93 -0.42 0.16 15 23 H 0.07 0.66 6.64 -51.93 -0.35 0.32 15 24 H 0.16 1.63 8.06 -52.48 -0.42 1.21 15 25 H 0.19 3.91 5.14 -52.48 -0.27 3.64 15 26 H 0.42 6.03 7.46 -34.47 -0.26 5.77 15 27 H 0.28 7.16 8.31 -40.82 -0.34 6.82 15 LS Contribution 263.80 15.07 3.98 3.98 Total: -1.00 -30.90 263.80 -6.36 -37.26 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -1.78 Total: 5.51 kcal Atomic # 6 Polarization: -20.46 SS G_CDS: -1.25 Total: -21.71 kcal Atomic # 7 Polarization: -49.90 SS G_CDS: 0.84 Total: -49.06 kcal Atomic # 8 Polarization: -49.06 SS G_CDS: -1.69 Total: -50.75 kcal Atomic # 14 Polarization: 19.61 SS G_CDS: -4.51 Total: 15.10 kcal Atomic # 16 Polarization: 62.16 SS G_CDS: -0.44 Total: 61.72 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.51 Total: -2.06 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -30.90 -6.36 -37.26 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.267 kcal (2) G-P(sol) polarization free energy of solvation -30.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds