Wall clock time and date at job start Mon Mar 30 2020 01:47:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37885 * 120.45145 * 2 1 4 4 N 1.32003 * 120.86157 * 180.02562 * 3 2 1 5 5 C 1.32112 * 121.88701 * 0.02562 * 4 3 2 6 6 Cl 1.73602 * 119.59231 * 179.97438 * 5 4 3 7 7 C 1.38043 * 120.81001 * 359.73264 * 5 4 3 8 8 C 1.39428 * 119.05753 * 0.51446 * 7 5 4 9 9 N 1.39175 * 120.85626 * 179.77211 * 8 7 5 10 10 S 1.65597 * 119.99808 * 34.72311 * 9 8 7 11 11 O 1.42102 * 106.40060 * 178.54028 * 10 9 8 12 12 O 1.42101 * 106.40207 * 311.45334 * 10 9 8 13 13 C 1.76194 * 107.22327 * 64.99742 * 10 9 8 14 14 H 1.08011 * 119.99735 * 359.97438 * 13 10 9 15 15 C 1.37876 * 120.00285 * 180.02562 * 13 10 9 16 16 N 1.31513 * 119.99859 * 179.97438 * 15 13 10 17 17 Si 1.86796 * 120.00070 * 359.97438 * 15 13 10 18 18 H 1.48509 * 109.46858 * 90.00172 * 17 15 13 19 19 H 1.48497 * 109.47330 * 209.99881 * 17 15 13 20 20 H 1.48497 * 109.47165 * 330.00454 * 17 15 13 21 21 H 1.08997 * 109.47425 * 269.97700 * 1 2 3 22 22 H 1.08998 * 109.47200 * 29.98276 * 1 2 3 23 23 H 1.09004 * 109.46754 * 149.97661 * 1 2 3 24 24 H 1.08005 * 119.57068 * 0.04336 * 3 2 1 25 25 H 1.08004 * 120.46781 * 180.28527 * 7 5 4 26 26 H 0.96995 * 120.00033 * 214.44370 * 9 8 7 27 27 H 0.97004 * 119.99840 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1886 0.0000 4 7 3.5258 1.1981 -0.0005 5 6 4.2317 0.0814 -0.0015 6 17 5.9657 0.1633 -0.0028 7 6 3.6073 -1.1498 0.0034 8 6 2.2140 -1.2025 -0.0014 9 7 1.5459 -2.4234 -0.0014 10 16 2.1795 -3.7140 0.8202 11 8 1.2591 -4.7843 0.6573 12 8 3.5461 -3.7996 0.4404 13 6 2.1641 -3.3006 2.5329 14 1 1.7824 -2.3425 2.8538 15 6 2.6401 -4.1998 3.4634 16 7 2.6290 -3.8910 4.7417 17 14 3.3008 -5.8565 2.9085 18 1 4.7569 -5.7437 2.6393 19 1 3.0712 -6.8636 3.9754 20 1 2.5997 -6.2792 1.6696 21 1 -0.3634 -0.0004 1.0276 22 1 -0.3633 0.8901 -0.5136 23 1 -0.3633 -0.8898 -0.5142 24 1 1.6661 2.1242 0.0007 25 1 4.1898 -2.0592 0.0072 26 1 0.7070 -2.5171 -0.4793 27 1 2.9642 -4.5234 5.3964 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192939432.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:06 Heat of formation + Delta-G solvation = -76.321698 kcal Electronic energy + Delta-G solvation = -17386.600245 eV Core-core repulsion = 14296.211746 eV Total energy + Delta-G solvation = -3090.388499 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.51725 -38.01999 -37.82552 -36.90829 -36.72278 -35.25641 -33.70239 -31.57556 -28.66458 -28.05861 -24.67966 -23.16872 -21.36143 -19.91971 -19.44850 -18.93328 -17.58887 -17.24778 -16.54397 -16.27504 -15.86228 -15.62031 -15.49384 -15.03414 -14.75535 -14.07997 -13.89445 -13.59202 -13.41261 -13.19116 -12.99877 -12.78628 -12.71079 -12.45685 -12.34388 -12.15311 -11.89397 -11.38366 -11.29635 -10.69659 -10.09709 -9.65993 -9.01477 -7.61500 -0.33255 -0.11930 0.18196 0.76471 1.03527 1.13193 1.17960 1.85024 2.14881 2.37732 2.54762 3.05132 3.45325 3.69081 3.80561 3.85580 4.01359 4.17501 4.50676 4.77074 4.81708 4.88534 5.12955 5.23815 5.31567 5.51178 5.91598 5.96064 6.46096 6.68010 8.15850 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.019577 B = 0.008016 C = 0.006800 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.920411 B = 3492.008707 C = 4116.600517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.156 4.156 3 C 0.138 3.862 4 N -0.505 5.505 5 C 0.180 3.820 6 Cl -0.030 7.030 7 C -0.222 4.222 8 C 0.211 3.789 9 N -1.035 6.035 10 S 2.689 3.311 11 O -1.008 7.008 12 O -1.008 7.008 13 C -1.031 5.031 14 H 0.105 0.895 15 C 0.112 3.888 16 N -0.847 5.847 17 Si 0.822 3.178 18 H -0.236 1.236 19 H -0.219 1.219 20 H -0.226 1.226 21 H 0.080 0.920 22 H 0.110 0.890 23 H 0.073 0.927 24 H 0.213 0.787 25 H 0.167 0.833 26 H 0.437 0.563 27 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.161 8.009 -9.339 12.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.162 4.162 3 C -0.019 4.019 4 N -0.218 5.218 5 C 0.017 3.983 6 Cl -0.001 7.001 7 C -0.247 4.247 8 C 0.104 3.896 9 N -0.784 5.784 10 S 2.791 3.209 11 O -0.998 6.998 12 O -0.998 6.998 13 C -1.165 5.165 14 H 0.124 0.876 15 C -0.106 4.106 16 N -0.476 5.476 17 Si 0.639 3.361 18 H -0.160 1.160 19 H -0.141 1.141 20 H -0.148 1.148 21 H 0.099 0.901 22 H 0.129 0.871 23 H 0.092 0.908 24 H 0.229 0.771 25 H 0.185 0.815 26 H 0.277 0.723 27 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.112 7.885 -9.466 12.499 hybrid contribution -0.195 -1.211 0.676 1.400 sum -2.306 6.674 -8.790 11.275 Atomic orbital electron populations 1.20807 0.86686 1.05118 1.03943 1.21293 1.00045 0.91481 1.03379 1.23132 0.87245 0.98801 0.92733 1.67103 1.09676 1.29585 1.15408 1.21263 0.87658 0.89438 0.99960 1.98373 1.06658 1.98620 1.96495 1.22697 0.94795 1.00858 1.06329 1.17567 0.90198 0.86470 0.95343 1.52947 1.36635 1.23440 1.65365 1.01054 0.72926 0.71235 0.75719 1.93485 1.65231 1.52696 1.88426 1.93332 1.36101 1.85481 1.84850 1.30665 1.56578 1.13850 1.15375 0.87634 1.25115 0.90586 1.00314 0.94583 1.69996 1.38057 1.37744 1.01839 0.87522 0.82952 0.81854 0.83774 1.15968 1.14122 1.14813 0.90097 0.87136 0.90776 0.77099 0.81544 0.72312 0.89617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.93 9.82 71.23 0.70 -1.23 15 2 C -0.16 -4.09 5.91 -19.65 -0.12 -4.21 15 3 C 0.14 3.40 10.85 84.58 0.92 4.32 15 4 N -0.51 -15.86 10.34 -186.99 -1.93 -17.79 15 5 C 0.18 6.36 7.27 84.60 0.61 6.98 15 6 Cl -0.03 -0.98 29.10 -2.72 -0.08 -1.06 15 7 C -0.22 -8.55 9.06 22.51 0.20 -8.35 15 8 C 0.21 7.28 6.36 38.57 0.25 7.52 15 9 N -1.03 -36.34 5.51 -51.00 -0.28 -36.62 15 10 S 2.69 125.34 4.08 -56.49 -0.23 125.11 15 11 O -1.01 -49.75 16.02 -128.00 -2.05 -51.80 15 12 O -1.01 -49.62 13.57 -128.00 -1.74 -51.36 15 13 C -1.03 -55.70 10.22 67.73 0.69 -55.01 15 14 H 0.11 5.91 8.06 -2.90 -0.02 5.88 15 15 C 0.11 6.22 5.47 84.65 0.46 6.68 15 16 N -0.85 -47.75 13.96 21.45 0.30 -47.45 15 17 Si 0.82 39.32 26.54 68.60 1.82 41.14 15 18 H -0.24 -11.00 7.11 99.48 0.71 -10.29 15 19 H -0.22 -9.26 7.11 99.48 0.71 -8.56 15 20 H -0.23 -10.93 5.61 99.48 0.56 -10.37 15 21 H 0.08 1.50 8.14 -2.39 -0.02 1.48 15 22 H 0.11 1.16 8.09 -2.39 -0.02 1.14 15 23 H 0.07 1.22 6.64 -2.39 -0.02 1.21 15 24 H 0.21 3.07 8.06 -2.91 -0.02 3.04 15 25 H 0.17 7.12 5.14 -2.91 -0.01 7.11 15 26 H 0.44 11.81 7.46 -96.75 -0.72 11.09 15 27 H 0.29 14.87 8.31 -92.71 -0.77 14.10 15 Total: -1.00 -67.18 263.80 -0.11 -67.29 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: 0.36 Total: 15.83 kcal Atomic # 6 Polarization: -47.02 SS G_CDS: 3.72 Total: -43.30 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -1.92 Total: -101.86 kcal Atomic # 8 Polarization: -99.37 SS G_CDS: -3.79 Total: -103.15 kcal Atomic # 14 Polarization: 39.32 SS G_CDS: 1.82 Total: 41.14 kcal Atomic # 16 Polarization: 125.34 SS G_CDS: -0.23 Total: 125.11 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.06 kcal Total: -67.18 -0.11 -67.29 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939432.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.034 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds