Wall clock time and date at job start Mon Mar 30 2020 01:46:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.38082 * 120.47436 * 2 1 4 4 Cl 1.73598 * 119.59541 * 0.02562 * 3 2 1 5 5 N 1.32075 * 120.80904 * 179.97438 * 3 2 1 6 6 C 1.32031 * 121.89327 * 0.02562 * 5 3 2 7 7 C 1.37842 * 120.85957 * 359.71744 * 6 5 3 8 8 C 1.39392 * 120.47009 * 179.97438 * 2 1 3 9 9 N 1.39175 * 120.85888 * 0.02562 * 8 2 1 10 10 S 1.65598 * 119.99972 * 215.00078 * 9 8 2 11 11 O 1.42099 * 106.40395 * 311.45954 * 10 9 8 12 12 O 1.42101 * 106.40367 * 178.53824 * 10 9 8 13 13 C 1.76199 * 107.21820 * 64.99824 * 10 9 8 14 14 H 1.07997 * 120.00250 * 0.02562 * 13 10 9 15 15 C 1.37880 * 120.00013 * 179.72553 * 13 10 9 16 16 N 1.31514 * 119.99843 * 180.02562 * 15 13 10 17 17 Si 1.86801 * 119.99948 * 359.97438 * 15 13 10 18 18 H 1.48501 * 109.46896 * 90.00154 * 17 15 13 19 19 H 1.48499 * 109.47039 * 210.00314 * 17 15 13 20 20 H 1.48501 * 109.47275 * 330.00114 * 17 15 13 21 21 H 1.09001 * 109.47280 * 270.02263 * 1 2 3 22 22 H 1.09002 * 109.47312 * 30.01568 * 1 2 3 23 23 H 1.08996 * 109.47267 * 150.01825 * 1 2 3 24 24 H 1.07995 * 119.57116 * 180.02562 * 6 5 3 25 25 H 1.07999 * 120.45538 * 180.28544 * 7 6 5 26 26 H 0.96994 * 119.99895 * 34.99721 * 9 8 2 27 27 H 0.97009 * 119.99998 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2072 1.1901 0.0000 4 17 1.3411 2.6945 0.0007 5 7 3.5279 1.1978 0.0005 6 6 4.2320 0.0809 0.0005 7 6 3.6081 -1.1482 0.0059 8 6 2.2138 -1.2014 0.0005 9 7 1.5460 -2.4225 0.0005 10 16 2.1792 -3.7124 0.8237 11 8 3.5463 -3.7978 0.4456 12 8 1.2593 -4.7832 0.6606 13 6 2.1616 -3.2979 2.5361 14 1 1.7785 -2.3401 2.8560 15 6 2.6311 -4.1988 3.4684 16 7 2.6175 -3.8895 4.7466 17 14 3.2852 -5.8590 2.9159 18 1 4.7424 -5.7533 2.6502 19 1 3.0482 -6.8643 3.9829 20 1 2.5850 -6.2792 1.6756 21 1 -0.3634 0.0004 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3633 -0.8901 -0.5135 24 1 5.3108 0.1310 0.0014 25 1 4.1905 -2.0577 0.0105 26 1 0.7098 -2.5180 -0.4815 27 1 2.9475 -4.5235 5.4025 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192939448.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:52 Heat of formation + Delta-G solvation = -51.706628 kcal Electronic energy + Delta-G solvation = -17362.143158 eV Core-core repulsion = 14272.822048 eV Total energy + Delta-G solvation = -3089.321109 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.24086 -36.66316 -36.06441 -35.60484 -34.82053 -33.20990 -32.51033 -30.11649 -27.10184 -26.60660 -23.17636 -22.04797 -19.54779 -18.22779 -17.92485 -17.14285 -16.11362 -15.50847 -15.05002 -14.89671 -14.46850 -14.18178 -13.65257 -13.51626 -13.04230 -12.72927 -12.50087 -12.17149 -12.05853 -11.65103 -11.47209 -11.21862 -11.04654 -10.86438 -10.81234 -10.54892 -10.09000 -9.41502 -9.36452 -9.32043 -8.67698 -8.43957 -6.95484 -5.54233 1.14883 1.26506 1.66945 1.97838 2.95502 3.05179 3.12550 3.76457 3.81826 3.84767 4.42875 4.64756 4.83646 4.94234 5.02652 5.12271 5.46571 5.67076 5.76856 5.84774 5.87324 6.06268 6.13321 6.53340 6.75436 7.24382 7.32299 7.94359 8.03738 8.52002 10.16384 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.029515 B = 0.006246 C = 0.006181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.426861 B = 4481.526592 C = 4528.560777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.154 4.154 3 C 0.190 3.810 4 Cl -0.040 7.040 5 N -0.498 5.498 6 C 0.134 3.866 7 C -0.209 4.209 8 C 0.237 3.763 9 N -1.049 6.049 10 S 2.664 3.336 11 O -0.996 6.996 12 O -0.991 6.991 13 C -1.011 5.011 14 H 0.124 0.876 15 C 0.155 3.845 16 N -0.814 5.814 17 Si 0.801 3.199 18 H -0.243 1.243 19 H -0.252 1.252 20 H -0.221 1.221 21 H 0.081 0.919 22 H 0.075 0.925 23 H 0.068 0.932 24 H 0.169 0.831 25 H 0.187 0.813 26 H 0.419 0.581 27 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.806 6.860 -8.473 11.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.162 4.162 3 C 0.025 3.975 4 Cl -0.011 7.011 5 N -0.211 5.211 6 C -0.022 4.022 7 C -0.232 4.232 8 C 0.129 3.871 9 N -0.793 5.793 10 S 2.767 3.233 11 O -0.986 6.986 12 O -0.982 6.982 13 C -1.146 5.146 14 H 0.142 0.858 15 C -0.066 4.066 16 N -0.442 5.442 17 Si 0.620 3.380 18 H -0.167 1.167 19 H -0.176 1.176 20 H -0.143 1.143 21 H 0.100 0.900 22 H 0.094 0.906 23 H 0.087 0.913 24 H 0.186 0.814 25 H 0.204 0.796 26 H 0.255 0.745 27 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -1.002 6.881 -8.620 11.075 hybrid contribution -0.742 -0.939 0.454 1.280 sum -1.743 5.942 -8.166 10.248 Atomic orbital electron populations 1.20708 0.89437 1.03035 1.03537 1.20318 0.97978 0.90899 1.06976 1.21091 0.89723 0.86200 1.00500 1.98362 1.73950 1.32266 1.96562 1.66975 1.06160 1.32602 1.15341 1.22446 1.00023 0.85729 0.93977 1.23262 0.93614 1.03189 1.03106 1.17359 0.91036 0.85044 0.93633 1.53627 1.36217 1.23884 1.65523 1.01978 0.73372 0.70889 0.77040 1.93323 1.35134 1.84882 1.85247 1.93518 1.64866 1.51301 1.88475 1.30173 1.57200 1.14522 1.12716 0.85811 1.24395 0.90263 0.97673 0.94269 1.69973 1.36950 1.36286 1.00972 0.87874 0.83003 0.83878 0.83214 1.16663 1.17578 1.14284 0.89996 0.90630 0.91321 0.81352 0.79620 0.74503 0.90573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.40 9.41 36.00 0.34 -1.06 15 2 C -0.15 -2.45 5.92 -104.25 -0.62 -3.06 15 3 C 0.19 3.04 7.26 -17.50 -0.13 2.92 15 4 Cl -0.04 -0.54 27.45 -51.86 -1.42 -1.96 15 5 N -0.50 -8.28 10.34 -10.46 -0.11 -8.39 15 6 C 0.13 2.10 11.17 -17.61 -0.20 1.91 15 7 C -0.21 -3.68 9.30 -39.24 -0.36 -4.05 15 8 C 0.24 4.19 6.36 -83.61 -0.53 3.66 15 9 N -1.05 -18.83 5.51 32.53 0.18 -18.65 15 10 S 2.66 61.23 4.08 -107.50 -0.44 60.79 15 11 O -1.00 -23.57 13.60 -57.17 -0.78 -24.35 15 12 O -0.99 -24.55 15.99 -57.17 -0.91 -25.46 15 13 C -1.01 -26.68 10.22 30.60 0.31 -26.37 15 14 H 0.12 3.37 8.06 -52.49 -0.42 2.95 15 15 C 0.15 4.23 5.47 -17.82 -0.10 4.13 15 16 N -0.81 -22.56 13.96 55.43 0.77 -21.78 15 17 Si 0.80 19.33 26.55 -169.99 -4.51 14.82 15 18 H -0.24 -5.68 7.11 56.52 0.40 -5.28 15 19 H -0.25 -5.62 7.11 56.52 0.40 -5.22 15 20 H -0.22 -5.39 5.59 56.52 0.32 -5.07 15 21 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 22 H 0.07 0.83 6.92 -51.93 -0.36 0.47 15 23 H 0.07 0.76 6.65 -51.93 -0.35 0.42 15 24 H 0.17 2.04 8.06 -52.49 -0.42 1.62 15 25 H 0.19 3.47 5.14 -52.49 -0.27 3.20 15 26 H 0.42 6.09 7.47 -34.47 -0.26 5.83 15 27 H 0.28 7.11 8.31 -40.82 -0.34 6.77 15 LS Contribution 261.12 15.07 3.94 3.94 Total: -1.00 -30.38 261.12 -6.29 -36.67 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -1.72 Total: 6.30 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -1.28 Total: -21.93 kcal Atomic # 7 Polarization: -49.67 SS G_CDS: 0.84 Total: -48.82 kcal Atomic # 8 Polarization: -48.11 SS G_CDS: -1.69 Total: -49.81 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -4.51 Total: 14.82 kcal Atomic # 16 Polarization: 61.23 SS G_CDS: -0.44 Total: 60.79 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.42 Total: -1.96 kcal Total LS contribution 3.94 Total: 3.94 kcal Total: -30.38 -6.29 -36.67 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192939448.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.034 kcal (2) G-P(sol) polarization free energy of solvation -30.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds