Wall clock time and date at job start Mon Mar 30 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48501 * 109.47033 * 270.00149 * 3 2 1 5 5 H 1.48506 * 109.47124 * 30.00279 * 3 2 1 6 6 H 1.48501 * 109.47049 * 149.99936 * 3 2 1 7 7 C 1.37882 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99847 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40474 * 66.45958 * 9 7 2 11 11 O 1.42102 * 106.40104 * 293.53734 * 9 7 2 12 12 N 1.65600 * 107.21732 * 179.97438 * 9 7 2 13 13 C 1.39009 * 119.99922 * 64.99795 * 12 9 7 14 14 N 1.32426 * 119.70288 * 0.02562 * 13 12 9 15 15 C 1.31944 * 121.62229 * 179.97438 * 14 13 12 16 16 C 1.38070 * 120.85599 * 0.02562 * 15 14 13 17 17 C 1.38841 * 119.32617 * 359.97438 * 16 15 14 18 18 C 1.38348 * 118.50618 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.44911 * 180.02562 * 18 17 16 20 20 Cl 1.80303 * 109.47057 * 269.97791 * 19 18 17 21 21 H 0.96999 * 119.99851 * 359.97438 * 1 2 3 22 22 H 0.96997 * 120.00649 * 244.99857 * 12 9 7 23 23 H 1.08006 * 119.57192 * 179.72381 * 15 14 13 24 24 H 1.07999 * 120.33359 * 179.97438 * 16 15 14 25 25 H 1.07995 * 120.74559 * 180.02562 * 17 16 15 26 26 H 1.08999 * 109.47052 * 29.97853 * 19 18 17 27 27 H 1.09000 * 109.46800 * 149.97814 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1673 -0.6506 1.2503 11 8 4.1682 -0.6489 -1.2491 12 7 4.2566 -2.7759 0.0000 13 6 3.9768 -3.5902 -1.0914 14 7 3.3183 -3.0947 -2.1280 15 6 3.0330 -3.8332 -3.1835 16 6 3.4138 -5.1590 -3.2440 17 6 4.1061 -5.7170 -2.1778 18 6 4.3909 -4.9180 -1.0848 19 6 5.1405 -5.4785 0.0962 20 17 3.9676 -6.1583 1.2850 21 1 -0.4850 0.8401 0.0004 22 1 4.7390 -3.1344 0.7613 23 1 2.4903 -3.3963 -4.0088 24 1 3.1755 -5.7558 -4.1120 25 1 4.4154 -6.7515 -2.2011 26 1 5.8136 -6.2665 -0.2414 27 1 5.7187 -4.6848 0.5694 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192943030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:03 Heat of formation + Delta-G solvation = -48.690073 kcal Electronic energy + Delta-G solvation = -17406.149269 eV Core-core repulsion = 14316.958968 eV Total energy + Delta-G solvation = -3089.190302 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.23945 -36.08173 -35.69048 -35.01213 -34.48015 -33.14831 -32.96853 -29.98692 -26.94010 -26.34670 -23.24805 -22.01427 -19.26857 -18.13727 -17.72123 -16.80350 -15.68420 -15.58667 -15.09683 -14.78197 -14.46674 -14.04327 -13.60135 -13.49029 -13.28170 -12.94861 -12.80224 -12.08153 -11.77165 -11.35095 -11.16470 -10.79859 -10.63961 -10.59464 -10.49097 -10.43103 -9.94780 -9.58502 -9.17498 -9.07924 -8.96665 -8.06700 -6.73970 -5.24900 1.08904 1.51981 1.85141 2.45158 3.09280 3.21014 3.27870 3.76723 3.98916 4.06614 4.43260 4.58531 4.64365 4.87038 4.93119 5.06718 5.22750 5.35670 5.38875 5.74568 5.89965 6.05262 6.27437 6.36323 6.78956 7.24070 7.53921 8.26411 8.30926 8.75906 10.38684 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.007456 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.383979 B = 3754.553576 C = 4170.012103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.155 3.845 3 Si 0.802 3.198 4 H -0.245 1.245 5 H -0.255 1.255 6 H -0.224 1.224 7 C -0.987 4.987 8 H 0.121 0.879 9 S 2.661 3.339 10 O -1.002 7.002 11 O -0.979 6.979 12 N -1.034 6.034 13 C 0.423 3.577 14 N -0.492 5.492 15 C 0.162 3.838 16 C -0.223 4.223 17 C -0.025 4.025 18 C -0.212 4.212 19 C 0.017 3.983 20 Cl -0.177 7.177 21 H 0.280 0.720 22 H 0.420 0.580 23 H 0.163 0.837 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.106 0.894 27 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.372 -12.275 -3.698 15.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.452 5.452 2 C -0.064 4.064 3 Si 0.622 3.378 4 H -0.169 1.169 5 H -0.179 1.179 6 H -0.146 1.146 7 C -1.123 5.123 8 H 0.139 0.861 9 S 2.764 3.236 10 O -0.992 6.992 11 O -0.969 6.969 12 N -0.775 5.775 13 C 0.188 3.812 14 N -0.206 5.206 15 C 0.003 3.997 16 C -0.245 4.245 17 C -0.052 4.052 18 C -0.220 4.220 19 C -0.046 4.046 20 Cl -0.150 7.150 21 H 0.090 0.910 22 H 0.255 0.745 23 H 0.180 0.820 24 H 0.154 0.846 25 H 0.153 0.847 26 H 0.124 0.876 27 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 8.402 -10.469 -3.613 13.901 hybrid contribution -0.085 -0.626 0.398 0.746 sum 8.317 -11.094 -3.215 14.234 Atomic orbital electron populations 1.69982 1.06463 1.28855 1.39929 1.24364 0.94759 0.98542 0.88762 0.87881 0.83370 0.84765 0.81821 1.16887 1.17942 1.14584 1.30025 1.14029 1.02182 1.66053 0.86104 1.02029 0.78286 0.69784 0.73505 1.93511 1.85875 1.74417 1.45388 1.93441 1.84956 1.74094 1.44373 1.53978 1.67860 1.32401 1.23247 1.17798 0.89468 0.87084 0.86837 1.67455 1.14287 1.38267 1.00595 1.22632 0.92930 0.90108 0.94008 1.21923 1.04632 0.97215 1.00699 1.21176 0.93598 0.98937 0.91457 1.20059 1.09579 0.94122 0.98261 1.22929 0.91594 1.00889 0.89204 1.98751 1.65647 1.87506 1.63117 0.90979 0.74459 0.81987 0.84649 0.84730 0.87577 0.88409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -24.12 13.96 55.43 0.77 -23.34 15 2 C 0.15 4.52 5.47 -17.82 -0.10 4.42 15 3 Si 0.80 20.85 26.54 -169.99 -4.51 16.34 15 4 H -0.25 -6.24 7.11 56.52 0.40 -5.84 15 5 H -0.26 -6.09 7.11 56.52 0.40 -5.69 15 6 H -0.22 -5.89 5.61 56.52 0.32 -5.58 15 7 C -0.99 -28.21 9.87 30.60 0.30 -27.91 15 8 H 0.12 3.57 8.06 -52.49 -0.42 3.15 15 9 S 2.66 68.01 3.87 -107.50 -0.42 67.59 15 10 O -1.00 -26.87 16.02 -57.17 -0.92 -27.79 15 11 O -0.98 -26.65 15.70 -57.17 -0.90 -27.55 15 12 N -1.03 -20.60 5.76 31.13 0.18 -20.42 15 13 C 0.42 7.94 7.32 -155.01 -1.13 6.81 15 14 N -0.49 -10.07 8.33 -12.43 -0.10 -10.17 15 15 C 0.16 2.53 11.17 -17.57 -0.20 2.34 15 16 C -0.22 -2.68 10.10 -39.42 -0.40 -3.08 15 17 C -0.03 -0.30 9.85 -39.32 -0.39 -0.68 15 18 C -0.21 -3.01 5.29 -104.27 -0.55 -3.56 15 19 C 0.02 0.19 6.36 36.00 0.23 0.42 15 20 Cl -0.18 -2.33 29.13 -51.86 -1.51 -3.84 15 21 H 0.28 7.43 8.31 -40.82 -0.34 7.09 15 22 H 0.42 6.86 6.80 -34.48 -0.23 6.62 15 23 H 0.16 2.11 8.06 -52.48 -0.42 1.68 15 24 H 0.14 1.15 8.06 -52.49 -0.42 0.73 15 25 H 0.13 1.10 8.06 -52.49 -0.42 0.68 15 26 H 0.11 0.82 8.09 -51.93 -0.42 0.40 15 27 H 0.10 1.00 6.56 -51.93 -0.34 0.65 15 LS Contribution 266.57 15.07 4.02 4.02 Total: -1.00 -34.97 266.57 -7.53 -42.49 By element: Atomic # 1 Polarization: 5.82 SS G_CDS: -1.91 Total: 3.91 kcal Atomic # 6 Polarization: -19.01 SS G_CDS: -2.23 Total: -21.24 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: 0.85 Total: -53.93 kcal Atomic # 8 Polarization: -53.52 SS G_CDS: -1.81 Total: -55.34 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -4.51 Total: 16.34 kcal Atomic # 16 Polarization: 68.01 SS G_CDS: -0.42 Total: 67.59 kcal Atomic # 17 Polarization: -2.33 SS G_CDS: -1.51 Total: -3.84 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -34.97 -7.53 -42.49 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.197 kcal (2) G-P(sol) polarization free energy of solvation -34.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds