Wall clock time and date at job start Mon Mar 30 2020 01:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00133 * 2 1 4 4 H 1.48501 * 109.47033 * 270.00149 * 3 2 1 5 5 H 1.48506 * 109.47124 * 30.00279 * 3 2 1 6 6 H 1.48501 * 109.47049 * 149.99936 * 3 2 1 7 7 C 1.37882 * 119.99787 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00120 * 359.97438 * 7 2 1 9 9 S 1.76201 * 119.99847 * 180.02562 * 7 2 1 10 10 O 1.42096 * 106.40474 * 66.45958 * 9 7 2 11 11 O 1.42102 * 106.40104 * 293.53734 * 9 7 2 12 12 N 1.65600 * 107.21732 * 179.97438 * 9 7 2 13 13 C 1.39009 * 119.99922 * 64.99795 * 12 9 7 14 14 N 1.32426 * 119.70288 * 0.02562 * 13 12 9 15 15 C 1.31944 * 121.62229 * 179.97438 * 14 13 12 16 16 C 1.38070 * 120.85599 * 0.02562 * 15 14 13 17 17 C 1.38841 * 119.32617 * 359.97438 * 16 15 14 18 18 C 1.38348 * 118.50618 * 0.02562 * 17 16 15 19 19 C 1.50697 * 120.44911 * 180.02562 * 18 17 16 20 20 Cl 1.80303 * 109.47057 * 269.97791 * 19 18 17 21 21 H 0.96999 * 119.99851 * 359.97438 * 1 2 3 22 22 H 0.96997 * 120.00649 * 244.99857 * 12 9 7 23 23 H 1.08006 * 119.57192 * 179.72381 * 15 14 13 24 24 H 1.07999 * 120.33359 * 179.97438 * 16 15 14 25 25 H 1.07995 * 120.74559 * 180.02562 * 17 16 15 26 26 H 1.08999 * 109.47052 * 29.97853 * 19 18 17 27 27 H 1.09000 * 109.46800 * 149.97814 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 16 3.7665 -1.1941 0.0001 10 8 4.1673 -0.6506 1.2503 11 8 4.1682 -0.6489 -1.2491 12 7 4.2566 -2.7759 0.0000 13 6 3.9768 -3.5902 -1.0914 14 7 3.3183 -3.0947 -2.1280 15 6 3.0330 -3.8332 -3.1835 16 6 3.4138 -5.1590 -3.2440 17 6 4.1061 -5.7170 -2.1778 18 6 4.3909 -4.9180 -1.0848 19 6 5.1405 -5.4785 0.0962 20 17 3.9676 -6.1583 1.2850 21 1 -0.4850 0.8401 0.0004 22 1 4.7390 -3.1344 0.7613 23 1 2.4903 -3.3963 -4.0088 24 1 3.1755 -5.7558 -4.1120 25 1 4.4154 -6.7515 -2.2011 26 1 5.8136 -6.2665 -0.2414 27 1 5.7187 -4.6848 0.5694 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192943030.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:03 Heat of formation + Delta-G solvation = -75.723074 kcal Electronic energy + Delta-G solvation = -17407.321508 eV Core-core repulsion = 14316.958968 eV Total energy + Delta-G solvation = -3090.362541 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.42485 -37.76095 -37.06112 -36.57760 -36.36724 -35.16766 -34.24838 -31.18568 -28.57466 -27.93221 -24.47856 -23.12786 -21.13503 -19.79455 -19.35594 -18.75356 -17.36764 -16.69832 -16.59788 -16.23895 -15.90688 -15.49604 -15.41914 -15.00574 -14.52249 -14.48146 -13.99980 -13.70339 -13.40948 -13.05264 -12.97569 -12.72545 -12.61924 -12.47410 -11.93773 -11.58579 -11.37774 -11.32944 -11.12425 -10.69731 -10.31547 -9.32333 -8.94294 -7.47387 -0.08693 0.01667 0.43395 1.03444 1.14265 1.18916 1.52237 1.88517 2.16508 2.44052 2.89168 3.23138 3.30136 3.60641 3.68040 3.92339 4.12523 4.26881 4.42336 4.47498 4.74678 4.78257 5.20487 5.23788 5.39141 5.64754 5.90801 6.02449 6.54286 7.08324 8.24136 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.023185 B = 0.007456 C = 0.006713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1207.383979 B = 3754.553576 C = 4170.012103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.109 3.891 3 Si 0.827 3.173 4 H -0.239 1.239 5 H -0.218 1.218 6 H -0.231 1.231 7 C -1.008 5.008 8 H 0.096 0.904 9 S 2.692 3.308 10 O -1.020 7.020 11 O -1.001 7.001 12 N -1.029 6.029 13 C 0.377 3.623 14 N -0.552 5.552 15 C 0.129 3.871 16 C -0.195 4.195 17 C -0.019 4.019 18 C -0.201 4.201 19 C 0.016 3.984 20 Cl -0.195 7.195 21 H 0.291 0.709 22 H 0.434 0.566 23 H 0.173 0.827 24 H 0.180 0.820 25 H 0.185 0.815 26 H 0.151 0.849 27 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.723 -14.237 -4.505 17.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.107 4.107 3 Si 0.644 3.356 4 H -0.163 1.163 5 H -0.140 1.140 6 H -0.153 1.153 7 C -1.141 5.141 8 H 0.114 0.886 9 S 2.793 3.207 10 O -1.011 7.011 11 O -0.990 6.990 12 N -0.777 5.777 13 C 0.144 3.856 14 N -0.268 5.268 15 C -0.028 4.028 16 C -0.216 4.216 17 C -0.045 4.045 18 C -0.209 4.209 19 C -0.046 4.046 20 Cl -0.169 7.169 21 H 0.101 0.899 22 H 0.272 0.728 23 H 0.190 0.810 24 H 0.198 0.802 25 H 0.202 0.798 26 H 0.169 0.831 27 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 9.717 -12.437 -4.431 16.393 hybrid contribution -0.499 -0.230 0.530 0.763 sum 9.218 -12.667 -3.901 16.145 Atomic orbital electron populations 1.70013 1.07408 1.30324 1.40818 1.25126 0.95640 1.01274 0.88653 0.87473 0.82729 0.82830 0.82544 1.16269 1.13960 1.15336 1.30495 1.16653 1.01254 1.65725 0.88622 1.00856 0.76441 0.70898 0.72525 1.93473 1.85498 1.76163 1.45921 1.93400 1.84584 1.75893 1.45162 1.53275 1.68546 1.31005 1.24876 1.18110 0.92134 0.88792 0.86560 1.67229 1.16040 1.41094 1.02430 1.23053 0.94236 0.91992 0.93516 1.22390 1.01737 0.95638 1.01867 1.21801 0.92075 1.00696 0.89942 1.20365 1.08382 0.92171 0.99972 1.23239 0.91060 1.02566 0.87761 1.98755 1.66633 1.87627 1.63860 0.89905 0.72775 0.80955 0.80243 0.79827 0.83114 0.87794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -51.19 13.96 21.45 0.30 -50.89 15 2 C 0.11 6.51 5.47 84.66 0.46 6.97 15 3 Si 0.83 42.42 26.54 68.60 1.82 44.24 15 4 H -0.24 -11.94 7.11 99.48 0.71 -11.24 15 5 H -0.22 -9.76 7.11 99.48 0.71 -9.06 15 6 H -0.23 -12.07 5.61 99.48 0.56 -11.52 15 7 C -1.01 -59.62 9.87 67.74 0.67 -58.95 15 8 H 0.10 5.97 8.06 -2.91 -0.02 5.94 15 9 S 2.69 140.28 3.87 -56.49 -0.22 140.06 15 10 O -1.02 -55.36 16.02 -128.00 -2.05 -57.41 15 11 O -1.00 -55.57 15.70 -128.00 -2.01 -57.58 15 12 N -1.03 -41.36 5.76 -55.44 -0.32 -41.68 15 13 C 0.38 14.03 7.32 133.04 0.97 15.00 15 14 N -0.55 -22.91 8.33 -193.25 -1.61 -24.52 15 15 C 0.13 3.93 11.17 84.64 0.95 4.87 15 16 C -0.20 -3.98 10.10 22.37 0.23 -3.75 15 17 C -0.02 -0.36 9.85 22.44 0.22 -0.14 15 18 C -0.20 -5.17 5.29 -19.63 -0.10 -5.28 15 19 C 0.02 0.31 6.36 71.24 0.45 0.77 15 20 Cl -0.20 -4.75 29.13 -2.72 -0.08 -4.83 15 21 H 0.29 15.62 8.31 -92.71 -0.77 14.85 15 22 H 0.43 14.12 6.80 -96.74 -0.66 13.46 15 23 H 0.17 4.48 8.06 -2.91 -0.02 4.46 15 24 H 0.18 2.05 8.06 -2.91 -0.02 2.02 15 25 H 0.18 1.73 8.06 -2.91 -0.02 1.71 15 26 H 0.15 1.54 8.09 -2.39 -0.02 1.52 15 27 H 0.10 1.86 6.56 -2.39 -0.02 1.84 15 Total: -1.00 -79.20 266.57 0.09 -79.11 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.41 Total: 13.99 kcal Atomic # 6 Polarization: -44.35 SS G_CDS: 3.85 Total: -40.50 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -1.63 Total: -117.09 kcal Atomic # 8 Polarization: -110.92 SS G_CDS: -4.06 Total: -114.98 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 1.82 Total: 44.24 kcal Atomic # 16 Polarization: 140.28 SS G_CDS: -0.22 Total: 140.06 kcal Atomic # 17 Polarization: -4.75 SS G_CDS: -0.08 Total: -4.83 kcal Total: -79.20 0.09 -79.11 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192943030.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.387 kcal (2) G-P(sol) polarization free energy of solvation -79.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.110 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds