Wall clock time and date at job start Mon Mar 30 2020 02:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35851 * 116.99742 * 2 1 4 4 C 1.38955 * 120.85252 * 359.97209 * 3 2 1 5 5 C 1.38395 * 119.14881 * 180.02562 * 4 3 2 6 6 F 1.35098 * 119.55407 * 180.02562 * 5 4 3 7 7 N 1.32069 * 120.89260 * 0.02562 * 5 4 3 8 8 C 1.32045 * 121.87136 * 359.95053 * 7 5 4 9 9 C 1.38467 * 120.75447 * 0.05188 * 8 7 5 10 10 N 1.40153 * 120.48286 * 180.25193 * 9 8 7 11 11 S 1.65605 * 119.99783 * 326.93698 * 10 9 8 12 12 O 1.42099 * 106.40108 * 181.12220 * 11 10 9 13 13 O 1.42098 * 106.40306 * 314.04111 * 11 10 9 14 14 C 1.76197 * 107.21616 * 67.58327 * 11 10 9 15 15 H 1.07999 * 120.00261 * 359.97438 * 14 11 10 16 16 C 1.37877 * 119.99680 * 179.97438 * 14 11 10 17 17 N 1.31520 * 120.00425 * 0.02562 * 16 14 11 18 18 Si 1.86800 * 120.00222 * 179.97438 * 16 14 11 19 19 H 1.48506 * 109.46800 * 90.00094 * 18 16 14 20 20 H 1.48499 * 109.47640 * 210.00164 * 18 16 14 21 21 H 1.48504 * 109.46886 * 330.00810 * 18 16 14 22 22 H 1.09004 * 109.46495 * 60.00629 * 1 2 3 23 23 H 1.08994 * 109.46755 * 180.02562 * 1 2 3 24 24 H 1.08999 * 109.47026 * 300.00520 * 1 2 3 25 25 H 1.08001 * 120.42604 * 0.04575 * 4 3 2 26 26 H 1.08004 * 119.62155 * 180.02562 * 8 7 5 27 27 H 0.96998 * 119.99939 * 146.93383 * 10 9 8 28 28 H 0.96994 * 120.00714 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0457 1.2105 0.0000 4 6 1.3063 2.3869 -0.0006 5 6 1.9709 3.6009 -0.0011 6 9 1.2601 4.7497 -0.0011 7 7 3.2906 3.6514 -0.0016 8 6 4.0302 2.5575 -0.0006 9 6 3.4410 1.3044 -0.0001 10 7 4.2315 0.1471 0.0063 11 16 5.6945 0.1394 -0.7697 12 8 6.2295 -1.1666 -0.6043 13 8 5.4773 0.7350 -2.0414 14 6 6.7597 1.2292 0.1148 15 1 6.3962 1.7473 0.9899 16 6 8.0572 1.4205 -0.3104 17 7 8.4998 0.7899 -1.3764 18 14 9.1864 2.5763 0.6268 19 1 9.9067 1.8179 1.6810 20 1 10.1696 3.1761 -0.3107 21 1 8.3806 3.6538 1.2553 22 1 -0.3632 0.5138 -0.8901 23 1 -0.3632 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 0.2268 2.3545 -0.0003 26 1 5.1070 2.6411 -0.0006 27 1 3.9217 -0.6493 0.4652 28 1 9.4125 0.9248 -1.6757 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192950851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:47 Heat of formation + Delta-G solvation = -128.725398 kcal Electronic energy + Delta-G solvation = -19512.536375 eV Core-core repulsion = 15991.539106 eV Total energy + Delta-G solvation = -3520.997269 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -48.81523 -40.58440 -38.16747 -35.50194 -34.87184 -34.18958 -33.25492 -31.34487 -28.95336 -27.65269 -26.37482 -23.29778 -22.86942 -19.38000 -18.76238 -17.97273 -17.76284 -16.95034 -16.30122 -16.16176 -15.69307 -15.52119 -15.04811 -14.75480 -14.45817 -14.14605 -13.57997 -13.26485 -13.06924 -12.96215 -12.14828 -11.83662 -11.62124 -11.34795 -11.27139 -10.97534 -10.68258 -10.61743 -10.48390 -10.40882 -9.58804 -9.34658 -9.14278 -8.98517 -7.85127 -6.84370 -5.51769 1.06210 1.30201 1.98012 2.97226 3.03454 3.10932 3.17626 3.73988 3.76751 3.95735 4.30607 4.48548 4.61982 4.73014 4.93401 4.97084 5.11581 5.27286 5.46173 5.56390 5.67578 5.98210 6.15947 6.49970 6.66501 7.06709 7.17620 7.54017 7.75649 7.91359 8.72364 10.09639 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.021680 B = 0.007099 C = 0.005707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1291.205690 B = 3943.084811 C = 4904.699150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.301 6.301 3 C 0.154 3.846 4 C -0.264 4.264 5 C 0.305 3.695 6 F -0.116 7.116 7 N -0.499 5.499 8 C 0.120 3.880 9 C 0.113 3.887 10 N -1.055 6.055 11 S 2.697 3.303 12 O -0.991 6.991 13 O -0.987 6.987 14 C -1.028 5.028 15 H 0.112 0.888 16 C 0.136 3.864 17 N -0.837 5.837 18 Si 0.923 3.077 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.257 1.257 22 H 0.059 0.941 23 H 0.104 0.896 24 H 0.058 0.942 25 H 0.150 0.850 26 H 0.207 0.793 27 H 0.418 0.582 28 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.167 1.231 4.701 14.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.212 6.212 3 C 0.097 3.903 4 C -0.287 4.287 5 C 0.149 3.851 6 F -0.095 7.095 7 N -0.216 5.216 8 C -0.038 4.038 9 C 0.011 3.989 10 N -0.798 5.798 11 S 2.798 3.202 12 O -0.981 6.981 13 O -0.977 6.977 14 C -1.161 5.161 15 H 0.130 0.870 16 C -0.083 4.083 17 N -0.466 5.466 18 Si 0.746 3.254 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.181 1.181 22 H 0.078 0.922 23 H 0.122 0.878 24 H 0.077 0.923 25 H 0.168 0.832 26 H 0.223 0.777 27 H 0.252 0.748 28 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.315 1.340 3.669 12.920 hybrid contribution -0.313 0.095 1.090 1.138 sum -12.628 1.435 4.759 13.571 Atomic orbital electron populations 1.23164 0.77851 1.04404 1.01700 1.86105 1.21748 1.25286 1.88076 1.18872 0.90718 0.84694 0.95988 1.21575 1.01797 0.90904 1.14381 1.17769 0.87001 0.80909 0.99434 1.91583 1.76094 1.48299 1.93569 1.67148 1.04847 1.33162 1.16416 1.23493 1.02311 0.83824 0.94195 1.17965 0.87568 0.89109 1.04225 1.54195 1.38286 1.17360 1.69953 1.01261 0.70524 0.74785 0.73665 1.93405 1.76057 1.41792 1.86879 1.93421 1.84596 1.79031 1.40660 1.30537 1.11082 1.46061 1.28411 0.87013 1.24746 0.97107 0.93473 0.93020 1.69875 1.19466 1.36721 1.20495 0.86107 0.79340 0.80215 0.79749 1.19090 1.19806 1.18117 0.92201 0.87761 0.92321 0.83193 0.77713 0.74831 0.89495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.84 101.05 0.99 1.19 15 2 O -0.30 -4.13 10.14 -19.27 -0.20 -4.32 15 3 C 0.15 2.45 6.75 -38.71 -0.26 2.18 15 4 C -0.26 -3.69 9.08 -39.26 -0.36 -4.05 15 5 C 0.30 4.99 8.40 -17.39 -0.15 4.85 15 6 F -0.12 -1.77 17.29 2.25 0.04 -1.73 15 7 N -0.50 -9.51 10.37 -13.51 -0.14 -9.65 15 8 C 0.12 2.39 10.14 -17.38 -0.18 2.22 15 9 C 0.11 2.15 6.24 -83.37 -0.52 1.63 15 10 N -1.06 -20.96 5.71 32.60 0.19 -20.78 15 11 S 2.70 68.57 4.64 -107.50 -0.50 68.07 15 12 O -0.99 -27.75 18.02 -57.17 -1.03 -28.78 15 13 O -0.99 -27.82 17.46 -57.17 -1.00 -28.82 15 14 C -1.03 -26.25 7.61 30.60 0.23 -26.01 15 15 H 0.11 2.54 6.90 -52.49 -0.36 2.18 15 16 C 0.14 3.58 5.46 -17.82 -0.10 3.48 15 17 N -0.84 -23.37 13.19 55.43 0.73 -22.64 15 18 Si 0.92 19.53 29.54 -169.99 -5.02 14.51 15 19 H -0.27 -5.47 7.11 56.52 0.40 -5.07 15 20 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 21 H -0.26 -5.25 7.11 56.52 0.40 -4.85 15 22 H 0.06 0.45 7.71 -51.93 -0.40 0.05 15 23 H 0.10 0.65 8.14 -51.93 -0.42 0.23 15 24 H 0.06 0.40 7.71 -51.93 -0.40 0.00 15 25 H 0.15 1.52 6.46 -52.49 -0.34 1.18 15 26 H 0.21 4.33 4.50 -52.48 -0.24 4.09 15 27 H 0.42 7.11 8.73 -34.48 -0.30 6.81 15 28 H 0.29 7.38 8.31 -40.82 -0.34 7.04 15 LS Contribution 269.64 15.07 4.06 4.06 Total: -1.00 -33.32 269.64 -4.79 -38.11 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -1.60 Total: 6.47 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -0.33 Total: -14.51 kcal Atomic # 7 Polarization: -53.84 SS G_CDS: 0.78 Total: -53.06 kcal Atomic # 8 Polarization: -59.70 SS G_CDS: -2.22 Total: -61.92 kcal Atomic # 9 Polarization: -1.77 SS G_CDS: 0.04 Total: -1.73 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -5.02 Total: 14.51 kcal Atomic # 16 Polarization: 68.57 SS G_CDS: -0.50 Total: 68.07 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -33.32 -4.79 -38.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192950851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.618 kcal (2) G-P(sol) polarization free energy of solvation -33.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds