Wall clock time and date at job start Mon Mar 30 2020 01:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.50706 * 109.47238 * 240.00482 * 2 1 3 5 5 N 1.31789 * 122.23280 * 59.70622 * 4 2 1 6 6 C 1.29122 * 117.26831 * 179.79221 * 5 4 2 7 7 S 1.76153 * 109.27833 * 0.45184 * 6 5 4 8 8 C 1.34228 * 122.23249 * 239.99907 * 4 2 1 9 9 N 1.39677 * 125.96950 * 359.97438 * 8 4 2 10 10 S 1.65607 * 119.99935 * 179.97438 * 9 8 4 11 11 O 1.42088 * 106.40428 * 178.53850 * 10 9 8 12 12 O 1.42105 * 106.40190 * 311.46345 * 10 9 8 13 13 C 1.76205 * 107.21555 * 64.99608 * 10 9 8 14 14 H 1.08000 * 120.00314 * 0.02562 * 13 10 9 15 15 C 1.37874 * 120.00001 * 179.97438 * 13 10 9 16 16 N 1.31515 * 120.00150 * 0.02562 * 15 13 10 17 17 Si 1.86802 * 120.00217 * 180.02562 * 15 13 10 18 18 H 1.48501 * 109.47178 * 359.97438 * 17 15 13 19 19 H 1.48493 * 109.47117 * 119.99959 * 17 15 13 20 20 H 1.48498 * 109.47000 * 240.00361 * 17 15 13 21 21 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 22 22 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 23 23 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 24 24 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 25 25 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 26 26 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 27 27 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 28 28 H 1.07995 * 125.36147 * 180.24241 * 6 5 4 29 29 H 0.96994 * 120.00643 * 0.02562 * 9 8 4 30 30 H 0.96997 * 120.00420 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7103 -1.2306 5 7 1.7365 -0.3017 -2.4481 6 6 2.2218 -0.9798 -3.4339 7 16 3.1719 -2.3228 -2.8042 8 6 2.8063 -1.8047 -1.1596 9 7 3.2452 -2.4246 0.0126 10 16 4.1995 -3.7754 -0.0724 11 8 4.5002 -4.1393 1.2678 12 8 3.5692 -4.6547 -0.9938 13 6 5.7243 -3.2910 -0.8106 14 1 5.8784 -2.2642 -1.1077 15 6 6.7213 -4.2227 -1.0081 16 7 6.5340 -5.4731 -0.6460 17 14 8.3382 -3.7091 -1.7901 18 1 8.2971 -2.2584 -2.1047 19 1 9.4524 -3.9802 -0.8466 20 1 8.5500 -4.4805 -3.0411 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 -0.8900 24 1 1.8934 -0.5138 0.8899 25 1 1.6767 1.9563 0.8900 26 1 3.1300 1.4425 -0.0005 27 1 1.6766 1.9564 -0.8899 28 1 2.0667 -0.7602 -4.4799 29 1 2.9904 -2.0645 0.8764 30 1 7.2352 -6.1286 -0.7852 RHF calculation, no. of doubly occupied orbitals= 45 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192952055.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:21 Heat of formation + Delta-G solvation = -83.885898 kcal Electronic energy + Delta-G solvation = -17640.280809 eV Core-core repulsion = 14687.441103 eV Total energy + Delta-G solvation = -2952.839706 eV No. of doubly occupied orbitals = 45 Molecular weight (most abundant/longest-lived isotopes) = 276.039 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.94811 -37.68838 -36.54596 -36.36040 -35.47915 -35.21407 -29.35218 -28.38133 -27.95183 -25.70828 -23.35596 -21.37538 -20.66470 -19.81307 -18.73992 -18.30426 -17.73457 -16.92457 -16.19446 -15.87612 -15.64285 -15.37248 -15.02947 -14.78310 -14.08968 -13.75729 -13.56326 -13.33718 -13.08633 -13.00242 -12.83989 -12.82303 -12.69045 -12.62757 -12.31926 -12.03898 -11.80157 -11.68391 -11.31262 -11.05143 -10.53335 -9.92076 -9.14578 -8.81267 -7.57662 -0.13260 -0.06492 0.13071 0.85744 1.31952 1.33679 1.51390 1.87391 2.15755 2.51690 2.63855 3.37311 3.44416 3.89177 4.02522 4.20614 4.29816 4.31133 4.58642 4.66006 4.87741 4.95743 5.02883 5.09337 5.19881 5.28736 5.41634 5.51235 5.79245 5.85507 6.70138 6.78497 8.14058 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.007185 C = 0.006617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.878539 B = 3895.823024 C = 4230.222703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.022 4.022 3 C -0.132 4.132 4 C -0.002 4.002 5 N -0.444 5.444 6 C 0.039 3.961 7 S 0.078 5.922 8 C 0.038 3.962 9 N -1.019 6.019 10 S 2.692 3.308 11 O -1.024 7.024 12 O -1.009 7.009 13 C -1.021 5.021 14 H 0.120 0.880 15 C 0.080 3.920 16 N -0.888 5.888 17 Si 0.988 3.012 18 H -0.248 1.248 19 H -0.259 1.259 20 H -0.255 1.255 21 H 0.080 0.920 22 H 0.041 0.959 23 H 0.062 0.938 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.043 0.957 27 H 0.061 0.939 28 H 0.249 0.751 29 H 0.429 0.571 30 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.381 11.986 -3.718 14.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.190 4.190 4 C -0.138 4.138 5 N -0.155 5.155 6 C -0.262 4.262 7 S 0.326 5.674 8 C -0.182 4.182 9 N -0.766 5.766 10 S 2.794 3.206 11 O -1.014 7.014 12 O -0.999 6.999 13 C -1.156 5.156 14 H 0.138 0.862 15 C -0.134 4.134 16 N -0.519 5.519 17 Si 0.806 3.194 18 H -0.171 1.171 19 H -0.183 1.183 20 H -0.179 1.179 21 H 0.099 0.901 22 H 0.061 0.939 23 H 0.081 0.919 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.265 0.735 29 H 0.267 0.733 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.325 10.441 -4.010 12.849 hybrid contribution 0.808 0.417 0.757 1.183 sum -5.516 10.858 -3.253 12.606 Atomic orbital electron populations 1.21730 0.92778 1.01510 1.03047 1.19787 0.97179 0.96378 0.91033 1.21722 1.00373 0.93924 1.02987 1.20228 1.02914 0.95726 0.94925 1.66075 1.22039 1.29383 0.98033 1.29768 0.99070 0.93573 1.03805 1.86416 1.52530 1.32197 0.96249 1.23028 1.04590 0.99392 0.91199 1.53177 1.65464 1.47426 1.10529 1.01063 0.75099 0.71103 0.73316 1.93362 1.85710 1.81636 1.40680 1.93380 1.78354 1.62899 1.65263 1.30545 1.20607 1.06217 1.58253 0.86229 1.25908 1.03834 0.92927 0.90766 1.69963 1.37666 1.03897 1.40383 0.85121 0.75099 0.80405 0.78772 1.17068 1.18305 1.17920 0.90148 0.93942 0.91935 0.90506 0.90205 0.93773 0.91977 0.73544 0.73269 0.88767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.97 9.13 71.98 0.66 -2.31 16 2 C -0.02 -0.58 3.23 -11.54 -0.04 -0.62 16 3 C -0.13 -2.95 9.13 71.98 0.66 -2.29 16 4 C 0.00 -0.07 5.31 41.65 0.22 0.15 16 5 N -0.44 -13.23 10.37 -187.02 -1.94 -15.17 16 6 C 0.04 1.03 12.52 130.64 1.64 2.67 16 7 S 0.08 2.88 21.01 -56.49 -1.19 1.69 16 8 C 0.04 1.45 7.06 82.53 0.58 2.03 16 9 N -1.02 -41.77 5.87 -53.27 -0.31 -42.08 16 10 S 2.69 142.08 4.63 -56.49 -0.26 141.82 16 11 O -1.02 -59.72 18.02 -128.00 -2.31 -62.03 16 12 O -1.01 -57.88 16.52 -128.00 -2.11 -60.00 16 13 C -1.02 -54.18 9.13 67.73 0.62 -53.56 16 14 H 0.12 5.85 7.81 -2.91 -0.02 5.82 16 15 C 0.08 4.26 5.46 84.65 0.46 4.73 16 16 N -0.89 -50.93 13.19 21.45 0.28 -50.65 16 17 Si 0.99 39.81 29.54 68.60 2.03 41.84 16 18 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 19 H -0.26 -9.88 7.11 99.48 0.71 -9.18 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.95 16 21 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 22 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 23 H 0.06 1.41 8.13 -2.38 -0.02 1.39 16 24 H 0.08 1.94 6.39 -2.39 -0.02 1.93 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.25 3.97 8.06 -2.91 -0.02 3.95 16 29 H 0.43 14.82 7.25 -96.75 -0.70 14.12 16 30 H 0.30 15.46 8.31 -92.71 -0.77 14.69 16 Total: -1.00 -71.99 288.09 -0.54 -72.54 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.47 Total: 21.24 kcal Atomic # 6 Polarization: -54.01 SS G_CDS: 4.80 Total: -49.21 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -1.97 Total: -107.89 kcal Atomic # 8 Polarization: -117.60 SS G_CDS: -4.42 Total: -122.03 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Atomic # 16 Polarization: 144.96 SS G_CDS: -1.45 Total: 143.51 kcal Total: -71.99 -0.54 -72.54 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192952055.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -71.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds