Wall clock time and date at job start Mon Mar 30 2020 01:46:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86796 * 120.00564 * 2 1 4 4 H 1.48497 * 109.47415 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47133 * 300.00295 * 3 2 1 6 6 H 1.48503 * 109.47014 * 60.00322 * 3 2 1 7 7 C 1.37880 * 120.00004 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00380 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99640 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.46835 * 179.97438 * 9 7 2 11 11 S 1.65607 * 119.99651 * 165.00079 * 10 9 7 12 12 O 1.42097 * 106.40132 * 311.45977 * 11 10 9 13 13 O 1.42107 * 106.39904 * 178.54249 * 11 10 9 14 14 C 1.76199 * 107.21942 * 65.00149 * 11 10 9 15 15 C 1.38228 * 119.60416 * 149.99662 * 14 11 10 16 16 C 1.38605 * 119.17787 * 179.97438 * 15 14 11 17 17 C 1.38776 * 118.40690 * 0.02562 * 16 15 14 18 18 Cl 1.73608 * 120.43122 * 179.97438 * 17 16 15 19 19 C 1.38308 * 119.14144 * 359.97438 * 17 16 15 20 20 N 1.31850 * 119.60075 * 329.73138 * 14 11 10 21 21 H 0.97008 * 119.99915 * 359.97438 * 1 2 3 22 22 H 1.08998 * 109.46919 * 60.00257 * 9 7 2 23 23 H 1.08992 * 109.47263 * 300.00010 * 9 7 2 24 24 H 0.96995 * 120.00383 * 345.00042 * 10 9 7 25 25 H 1.08002 * 120.41501 * 359.97438 * 15 14 11 26 26 H 1.08003 * 120.79848 * 180.02562 * 16 15 14 27 27 H 1.07994 * 119.63152 * 179.97438 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8906 2.3963 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2028 -3.6127 -0.0018 11 16 1.6881 -5.1424 0.3691 12 8 0.9260 -5.0308 1.5633 13 8 2.8236 -5.9882 0.2480 14 6 0.5635 -5.6352 -0.8946 15 6 0.4512 -6.9726 -1.2253 16 6 -0.4366 -7.3504 -2.2204 17 6 -1.1820 -6.3634 -2.8497 18 17 -2.3090 -6.7776 -4.1036 19 6 -1.0154 -5.0453 -2.4650 20 7 -0.1645 -4.7242 -1.5100 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 -0.8903 23 1 0.6246 -2.5571 0.8896 24 1 3.1345 -3.4540 -0.2198 25 1 1.0477 -7.7141 -0.7146 26 1 -0.5456 -8.3881 -2.4994 27 1 -1.5911 -4.2708 -2.9497 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196197731.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:46:14 Heat of formation + Delta-G solvation = -70.885309 kcal Electronic energy + Delta-G solvation = -16789.837593 eV Core-core repulsion = 13699.684833 eV Total energy + Delta-G solvation = -3090.152759 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.012 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.39627 -38.35680 -37.90016 -37.07905 -36.44914 -34.16781 -33.73238 -32.55745 -28.69778 -25.42604 -25.06517 -24.42494 -20.87529 -19.49594 -19.03769 -18.17185 -17.80067 -17.48571 -17.20400 -16.48993 -16.01560 -15.59377 -15.20523 -14.73157 -14.33855 -14.12558 -14.02763 -13.61414 -13.44853 -13.26265 -13.21406 -12.80230 -12.73621 -12.49613 -12.28086 -12.05336 -11.35199 -11.16751 -10.99809 -10.74068 -10.47435 -9.98319 -8.18537 -6.30157 -0.81616 -0.64804 -0.10297 0.69623 1.46104 1.47037 1.59449 1.85832 2.17948 2.44528 2.47583 3.15753 3.19424 3.47951 3.52936 3.71744 3.75226 4.28574 4.37283 4.63507 4.71556 5.08718 5.38270 5.53969 5.82963 6.02912 6.32848 6.36864 6.84546 7.38120 8.92518 Molecular weight = 276.01amu Principal moments of inertia in cm(-1) A = 0.019460 B = 0.005637 C = 0.004581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.485829 B = 4965.677076 C = 6110.636692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.007 3.993 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.277 1.277 6 H -0.281 1.281 7 C -0.549 4.549 8 H 0.073 0.927 9 C 0.258 3.742 10 N -1.093 6.093 11 S 2.720 3.280 12 O -0.986 6.986 13 O -0.969 6.969 14 C -0.455 4.455 15 C -0.076 4.076 16 C -0.069 4.069 17 C -0.041 4.041 18 Cl -0.023 7.023 19 C 0.085 3.915 20 N -0.408 5.408 21 H 0.267 0.733 22 H 0.037 0.963 23 H 0.002 0.998 24 H 0.420 0.580 25 H 0.187 0.813 26 H 0.199 0.801 27 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.887 -15.124 -8.190 17.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.203 1.203 6 H -0.207 1.207 7 C -0.588 4.588 8 H 0.091 0.909 9 C 0.134 3.866 10 N -0.855 5.855 11 S 2.806 3.194 12 O -0.976 6.976 13 O -0.959 6.959 14 C -0.674 4.674 15 C -0.097 4.097 16 C -0.096 4.096 17 C -0.071 4.071 18 Cl 0.006 6.994 19 C -0.077 4.077 20 N -0.119 5.119 21 H 0.076 0.924 22 H 0.055 0.945 23 H 0.020 0.980 24 H 0.255 0.745 25 H 0.204 0.796 26 H 0.216 0.784 27 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -1.992 -14.715 -7.280 16.538 hybrid contribution -0.191 0.337 -0.965 1.040 sum -2.182 -14.378 -8.246 16.718 Atomic orbital electron populations 1.70090 1.07611 1.28078 1.50585 1.25871 0.95806 1.03062 0.94500 0.85307 0.79004 0.78444 0.77638 1.18532 1.20290 1.20712 1.21711 0.94097 0.91155 1.51862 0.90858 1.18804 0.87722 0.83575 0.96484 1.55043 1.19581 1.23383 1.87530 1.01156 0.72703 0.72120 0.73389 1.93569 1.73405 1.86429 1.44217 1.93563 1.48434 1.66559 1.87301 1.33703 1.15596 0.99423 1.18695 1.22287 0.96696 0.94773 0.95957 1.22080 0.92424 1.01894 0.93180 1.22462 0.95044 0.95631 0.93914 1.98414 1.58395 1.93386 1.49209 1.23466 0.95493 0.95223 0.93486 1.68086 1.02956 1.35602 1.05214 0.92431 0.94500 0.98034 0.74467 0.79607 0.78377 0.79719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 13.29 21.45 0.28 -53.85 15 2 C 0.01 0.41 5.46 84.66 0.46 0.87 15 3 Si 0.97 42.86 29.54 68.60 2.03 44.89 15 4 H -0.26 -10.96 7.11 99.48 0.71 -10.26 15 5 H -0.28 -11.88 7.11 99.48 0.71 -11.17 15 6 H -0.28 -12.26 7.11 99.48 0.71 -11.56 15 7 C -0.55 -29.97 9.27 25.60 0.24 -29.73 15 8 H 0.07 3.76 7.65 -2.91 -0.02 3.74 15 9 C 0.26 13.40 5.51 85.64 0.47 13.87 15 10 N -1.09 -45.60 5.96 -190.80 -1.14 -46.73 15 11 S 2.72 101.63 5.74 -56.49 -0.32 101.31 15 12 O -0.99 -44.07 17.49 -128.00 -2.24 -46.31 15 13 O -0.97 -34.66 17.65 -128.00 -2.26 -36.92 15 14 C -0.45 -14.97 6.77 84.69 0.57 -14.39 15 15 C -0.08 -1.79 9.57 22.35 0.21 -1.58 15 16 C -0.07 -1.28 9.98 22.49 0.22 -1.05 15 17 C -0.04 -0.89 6.34 22.42 0.14 -0.75 15 18 Cl -0.02 -0.40 28.99 -2.72 -0.08 -0.48 15 19 C 0.09 2.41 10.99 84.70 0.93 3.34 15 20 N -0.41 -14.63 8.43 -193.22 -1.63 -16.26 15 21 H 0.27 14.61 8.31 -92.70 -0.77 13.84 15 22 H 0.04 1.97 6.81 -2.39 -0.02 1.96 15 23 H 0.00 0.10 7.75 -2.39 -0.02 0.08 15 24 H 0.42 15.57 8.54 -96.75 -0.83 14.75 15 25 H 0.19 3.18 7.94 -2.91 -0.02 3.16 15 26 H 0.20 1.86 8.06 -2.91 -0.02 1.84 15 27 H 0.19 4.58 8.06 -2.91 -0.02 4.55 15 Total: -1.00 -71.15 275.40 -1.70 -72.85 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: 0.40 Total: 10.92 kcal Atomic # 6 Polarization: -32.68 SS G_CDS: 3.26 Total: -29.42 kcal Atomic # 7 Polarization: -114.36 SS G_CDS: -2.48 Total: -116.84 kcal Atomic # 8 Polarization: -78.73 SS G_CDS: -4.50 Total: -83.23 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 101.63 SS G_CDS: -0.32 Total: 101.31 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -0.08 Total: -0.48 kcal Total: -71.15 -1.70 -72.85 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196197731.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.969 kcal (2) G-P(sol) polarization free energy of solvation -71.152 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds