Wall clock time and date at job start Mon Mar 30 2020 01:28:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47072 * 2 1 4 4 N 1.46901 * 109.47262 * 181.08702 * 3 2 1 5 5 C 1.46905 * 111.00078 * 299.42739 * 4 3 2 6 6 C 1.50695 * 109.47044 * 294.04464 * 5 4 3 7 7 H 1.08004 * 119.99717 * 355.08675 * 6 5 4 8 8 C 1.37872 * 120.00234 * 175.08280 * 6 5 4 9 9 N 1.31517 * 119.99797 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00297 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47158 * 90.00071 * 10 8 6 12 12 H 1.48498 * 109.47475 * 210.00397 * 10 8 6 13 13 H 1.48506 * 109.47237 * 330.00587 * 10 8 6 14 14 C 1.46904 * 110.99867 * 63.37691 * 4 3 2 15 15 C 1.50707 * 109.46798 * 66.04722 * 14 4 3 16 16 C 1.38230 * 119.99905 * 90.00361 * 15 14 4 17 17 C 1.38228 * 120.00171 * 179.97438 * 16 15 14 18 18 C 1.38238 * 119.99829 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99925 * 179.97438 * 18 17 16 20 20 C 1.53003 * 109.47292 * 240.00179 * 19 18 17 21 21 C 1.53002 * 109.47307 * 120.00305 * 19 18 17 22 22 C 1.38228 * 119.99922 * 0.25648 * 18 17 16 23 23 C 1.38233 * 119.99861 * 270.02333 * 15 14 4 24 24 H 1.08998 * 109.47337 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47415 * 299.99584 * 1 2 3 26 26 H 1.09001 * 109.47404 * 59.99871 * 1 2 3 27 27 H 1.09006 * 109.46995 * 240.00706 * 2 1 3 28 28 H 1.08993 * 109.47419 * 120.00761 * 2 1 3 29 29 H 1.09000 * 109.47000 * 61.09371 * 3 2 1 30 30 H 1.08998 * 109.47797 * 301.09207 * 3 2 1 31 31 H 1.09000 * 109.47106 * 54.04512 * 5 4 3 32 32 H 1.09004 * 109.46941 * 174.04669 * 5 4 3 33 33 H 0.97006 * 119.99966 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.47111 * 306.04889 * 14 4 3 35 35 H 1.08991 * 109.47171 * 186.04578 * 14 4 3 36 36 H 1.08006 * 119.99828 * 359.97438 * 16 15 14 37 37 H 1.08006 * 120.00653 * 180.02562 * 17 16 15 38 38 H 1.08999 * 109.47418 * 359.97438 * 19 18 17 39 39 H 1.08998 * 109.47221 * 59.99544 * 20 19 18 40 40 H 1.08995 * 109.47301 * 180.02562 * 20 19 18 41 41 H 1.08999 * 109.46680 * 300.00196 * 20 19 18 42 42 H 1.08999 * 109.47194 * 59.99481 * 21 19 18 43 43 H 1.09000 * 109.47314 * 180.02562 * 21 19 18 44 44 H 1.09004 * 109.46816 * 299.99907 * 21 19 18 45 45 H 1.08002 * 120.00230 * 179.72692 * 22 18 17 46 46 H 1.08002 * 120.00372 * 359.97438 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5087 1.4426 -0.0263 5 6 4.0565 0.7613 1.1544 6 6 3.7180 1.5512 2.3922 7 1 3.2224 2.5068 2.3043 8 6 4.0410 1.0542 3.6370 9 7 4.6449 -0.1092 3.7440 10 14 3.6222 2.0337 5.1714 11 1 2.2670 1.6548 5.6460 12 1 4.6183 1.7406 6.2331 13 1 3.6482 3.4844 4.8551 14 6 4.0131 0.8358 -1.2654 15 6 3.6334 1.7014 -2.4393 16 6 4.4829 2.7077 -2.8594 17 6 4.1349 3.5012 -3.9364 18 6 2.9371 3.2888 -4.5929 19 6 2.5575 4.1543 -5.7667 20 6 1.2462 4.8811 -5.4615 21 6 2.3783 3.2792 -7.0089 22 6 2.0850 2.2863 -4.1692 23 6 2.4354 1.4892 -3.0955 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8898 29 1 1.6927 1.9506 0.8996 30 1 1.6608 1.9620 -0.8800 31 1 3.6247 -0.2366 1.2308 32 1 5.1394 0.6824 1.0585 33 1 4.8725 -0.4588 4.6198 34 1 3.5765 -0.1552 -1.3885 35 1 5.0984 0.7508 -1.2127 36 1 5.4186 2.8739 -2.3461 37 1 4.7988 4.2872 -4.2649 38 1 3.3444 4.8864 -5.9480 39 1 1.3737 5.5046 -4.5766 40 1 0.9713 5.5068 -6.3106 41 1 0.4590 4.1494 -5.2800 42 1 1.5912 2.5475 -6.8274 43 1 2.1042 3.9053 -7.8580 44 1 3.3126 2.7615 -7.2264 45 1 1.1471 2.1232 -4.6794 46 1 1.7717 0.7029 -2.7674 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001204165611.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:31 Heat of formation + Delta-G solvation = 2.129627 kcal Electronic energy + Delta-G solvation = -21536.564106 eV Core-core repulsion = 18618.015779 eV Total energy + Delta-G solvation = -2918.548326 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.61479 -37.46812 -35.23927 -32.79081 -32.11319 -30.71783 -30.11259 -27.26426 -27.00630 -26.01442 -24.03098 -22.55547 -22.07317 -21.76318 -19.88651 -19.12673 -16.35607 -16.11196 -15.40224 -15.07631 -15.00805 -14.56358 -14.24682 -13.82698 -13.69192 -13.59346 -13.43173 -13.08975 -13.02285 -12.45441 -12.37665 -11.95300 -11.82226 -11.56885 -11.37909 -11.23778 -11.11010 -11.03103 -10.94693 -10.76023 -10.72414 -10.60510 -10.47466 -10.33664 -9.89487 -9.67609 -9.17912 -8.62260 -8.42244 -8.24924 -7.10074 -6.00469 -4.01116 1.60326 1.68199 3.32755 3.39134 3.43809 3.98602 4.45661 4.65168 4.75118 5.09134 5.13733 5.18317 5.25430 5.32635 5.36133 5.38274 5.47942 5.54628 5.56819 5.61055 5.69248 5.72009 5.83295 5.87038 5.90353 5.96861 6.10840 6.11086 6.14192 6.16313 6.30244 6.34763 6.40987 6.46358 6.54129 6.69334 6.78571 6.82091 6.97799 7.04344 7.28194 7.34785 7.45726 7.84099 8.12661 8.24025 8.58832 9.07166 9.62910 11.10128 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024327 B = 0.003925 C = 0.003772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.712119 B = 7132.310796 C = 7420.799200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.164 4.164 3 C 0.065 3.935 4 N -0.528 5.528 5 C 0.188 3.812 6 C -0.502 4.502 7 H 0.062 0.938 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.895 3.105 11 H -0.282 1.282 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.084 3.916 15 C -0.061 4.061 16 C -0.098 4.098 17 C -0.121 4.121 18 C -0.089 4.089 19 C -0.054 4.054 20 C -0.144 4.144 21 C -0.143 4.143 22 C -0.118 4.118 23 C -0.112 4.112 24 H 0.044 0.956 25 H 0.053 0.947 26 H 0.045 0.955 27 H 0.050 0.950 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.055 0.945 31 H 0.003 0.997 32 H 0.024 0.976 33 H 0.260 0.740 34 H 0.036 0.964 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.115 0.885 38 H 0.073 0.927 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.055 0.945 45 H 0.114 0.886 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.571 4.675 -18.271 19.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.203 4.203 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.063 3.937 6 C -0.541 4.541 7 H 0.080 0.920 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.723 3.277 11 H -0.208 1.208 12 H -0.213 1.213 13 H -0.198 1.198 14 C -0.044 4.044 15 C -0.062 4.062 16 C -0.117 4.117 17 C -0.139 4.139 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.201 4.201 21 C -0.200 4.200 22 C -0.136 4.136 23 C -0.131 4.131 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.021 0.979 32 H 0.042 0.958 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.139 0.861 37 H 0.133 0.867 38 H 0.092 0.908 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.132 0.868 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.310 5.045 -18.100 19.526 hybrid contribution -0.430 -0.465 1.011 1.194 sum -5.740 4.579 -17.089 18.600 Atomic orbital electron populations 1.21651 0.96557 1.00619 1.01197 1.22180 0.95464 1.00533 1.02105 1.22073 0.88434 0.94335 1.01510 1.62382 1.06601 1.54705 1.01413 1.19805 0.94824 0.92971 0.86057 1.21138 1.37998 1.04991 0.89968 0.91973 1.24967 0.95451 0.95083 0.99077 1.69960 1.41638 1.18372 1.23977 0.86542 0.77969 0.80505 0.82679 1.20797 1.21321 1.19790 1.21082 1.00174 0.94134 0.89008 1.19952 0.94091 0.96452 0.95690 1.21028 0.99924 0.94768 0.95966 1.20978 0.96467 0.99842 0.96592 1.19721 0.94939 0.97063 0.97229 1.20079 0.98194 0.96167 0.92848 1.21853 0.96648 1.00195 1.01396 1.21849 1.01939 0.99594 0.96615 1.20823 0.99199 0.96155 0.97447 1.21063 0.96437 0.99814 0.95784 0.93652 0.92740 0.93578 0.93135 0.90522 0.90352 0.92618 0.97917 0.95792 0.93011 0.94604 0.90816 0.86056 0.86684 0.90809 0.92451 0.92742 0.92509 0.92525 0.92730 0.92631 0.86820 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.95 5.18 -26.73 -0.14 -3.09 16 3 C 0.06 1.27 4.79 -3.82 -0.02 1.25 16 4 N -0.53 -11.33 4.69 -237.51 -1.11 -12.45 16 5 C 0.19 4.83 4.49 -4.98 -0.02 4.81 16 6 C -0.50 -14.02 8.40 -34.44 -0.29 -14.31 16 7 H 0.06 1.74 7.29 -52.48 -0.38 1.36 16 8 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.60 13.29 55.43 0.74 -25.87 16 10 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 14 C 0.08 1.53 4.93 -4.97 -0.02 1.51 16 15 C -0.06 -0.98 4.89 -104.62 -0.51 -1.50 16 16 C -0.10 -1.48 9.70 -39.59 -0.38 -1.87 16 17 C -0.12 -1.59 9.67 -39.59 -0.38 -1.97 16 18 C -0.09 -1.10 4.78 -104.63 -0.50 -1.60 16 19 C -0.05 -0.53 3.09 -91.77 -0.28 -0.81 16 20 C -0.14 -1.30 9.00 37.16 0.33 -0.97 16 21 C -0.14 -1.21 9.01 37.16 0.33 -0.88 16 22 C -0.12 -1.51 8.71 -39.59 -0.34 -1.86 16 23 C -0.11 -1.63 7.91 -39.58 -0.31 -1.94 16 24 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.86 5.72 -51.93 -0.30 0.56 16 28 H 0.08 1.63 6.35 -51.93 -0.33 1.30 16 29 H 0.08 1.69 6.94 -51.93 -0.36 1.33 16 30 H 0.06 1.01 5.93 -51.93 -0.31 0.70 16 31 H 0.00 0.08 6.04 -51.93 -0.31 -0.23 16 32 H 0.02 0.66 7.93 -51.93 -0.41 0.25 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.04 0.64 6.03 -51.93 -0.31 0.33 16 35 H 0.07 1.35 7.88 -51.93 -0.41 0.94 16 36 H 0.12 1.79 8.06 -52.48 -0.42 1.36 16 37 H 0.12 1.28 7.95 -52.48 -0.42 0.87 16 38 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.51 7.37 -51.93 -0.38 0.13 16 42 H 0.06 0.48 7.41 -51.93 -0.38 0.10 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.11 1.24 7.10 -52.49 -0.37 0.87 16 46 H 0.12 1.63 7.31 -52.49 -0.38 1.25 16 LS Contribution 357.26 15.07 5.38 5.38 Total: -1.00 -29.19 357.26 -10.28 -39.48 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.99 Total: 0.29 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -2.27 Total: -23.53 kcal Atomic # 7 Polarization: -37.94 SS G_CDS: -0.38 Total: -38.32 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.19 -10.28 -39.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001204165611.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.606 kcal (2) G-P(sol) polarization free energy of solvation -29.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.281 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds