Wall clock time and date at job start Mon Mar 30 2020 01:55:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30655 * 1 3 3 Si 1.86809 * 119.99557 * 2 1 4 4 H 1.48500 * 109.46863 * 264.46197 * 3 2 1 5 5 H 1.48495 * 109.47112 * 24.46351 * 3 2 1 6 6 H 1.48496 * 109.46922 * 144.46288 * 3 2 1 7 7 C 1.40213 * 120.00505 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99613 * 346.33702 * 7 2 1 9 9 C 1.40677 * 120.00275 * 166.33999 * 7 2 1 10 10 N 1.34120 * 120.58002 * 351.95723 * 9 7 2 11 11 C 1.31474 * 119.86150 * 180.25101 * 10 9 7 12 12 C 1.39121 * 121.14741 * 0.04365 * 11 10 9 13 13 N 1.31822 * 121.23367 * 359.95440 * 12 11 10 14 14 C 1.33116 * 120.02903 * 0.02562 * 13 12 11 15 15 C 1.47439 * 120.55412 * 180.02562 * 14 13 12 16 16 C 1.38878 * 123.67602 * 125.89605 * 15 14 13 17 17 C 1.33247 * 115.08307 * 179.80897 * 16 15 14 18 18 S 1.70515 * 111.48537 * 0.44826 * 17 16 15 19 19 C 1.38443 * 123.67898 * 306.19274 * 15 14 13 20 20 C 1.46311 * 125.51901 * 359.95669 * 19 15 14 21 21 O 1.21647 * 120.00150 * 354.42083 * 20 19 15 22 22 O 1.34931 * 120.00095 * 174.42513 * 20 19 15 23 23 H 0.96994 * 120.00700 * 0.02562 * 1 2 3 24 24 H 1.08001 * 119.42575 * 180.02562 * 11 10 9 25 25 H 1.08007 * 119.38518 * 179.97438 * 12 11 10 26 26 H 1.08005 * 122.45966 * 359.97438 * 16 15 14 27 27 H 1.07989 * 124.25902 * 180.23569 * 17 16 15 28 28 H 0.96701 * 113.99920 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3066 0.0000 0.0000 3 14 2.2405 1.6179 0.0000 4 1 2.6049 1.9790 -1.3936 5 1 1.3843 2.6837 0.5798 6 1 3.4746 1.4770 0.8138 7 6 2.0077 -1.2142 -0.0005 8 1 1.4907 -2.1364 0.2200 9 6 3.3847 -1.2313 -0.2883 10 7 4.0054 -0.1233 -0.7193 11 6 5.2918 -0.1564 -0.9887 12 6 6.0291 -1.3262 -0.8359 13 7 5.4640 -2.4404 -0.4152 14 6 4.1643 -2.4609 -0.1282 15 6 3.5204 -3.7005 0.3437 16 6 2.7823 -3.7864 1.5170 17 6 2.2728 -4.9898 1.7770 18 16 2.6915 -6.1193 0.5701 19 6 3.5907 -4.9071 -0.3314 20 6 4.2983 -5.1363 -1.5913 21 8 4.8042 -4.2018 -2.1835 22 8 4.3896 -6.3841 -2.0965 23 1 -0.4851 0.8399 -0.0004 24 1 5.7847 0.7400 -1.3350 25 1 7.0844 -1.3214 -1.0659 26 1 2.6301 -2.9392 2.1694 27 1 1.6733 -5.2216 2.6448 28 1 4.8747 -6.4358 -2.9315 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205378609.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:04 Heat of formation + Delta-G solvation = -47.751031 kcal Electronic energy + Delta-G solvation = -18637.543200 eV Core-core repulsion = 15550.826468 eV Total energy + Delta-G solvation = -3086.716732 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.035 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.29120 -40.67440 -38.56168 -36.90041 -36.09925 -34.46310 -32.59347 -30.91041 -28.23231 -26.86227 -24.20605 -23.61040 -23.19129 -20.14021 -19.69551 -19.67693 -18.48608 -18.07773 -17.27786 -16.76503 -16.54466 -16.13145 -15.83895 -15.15556 -15.04889 -14.71664 -14.22367 -13.93971 -13.65111 -13.55806 -13.38997 -13.04554 -12.82221 -12.54118 -12.48749 -12.00928 -11.71608 -11.45361 -11.43903 -11.07750 -10.13634 -9.72223 -9.53428 -9.09609 -9.03119 -6.83192 -0.65663 0.34869 0.56885 0.79748 0.99315 1.36873 1.43392 1.52209 1.61031 2.01493 2.19988 2.36981 2.53696 3.47093 3.61578 3.93576 4.10098 4.28702 4.37361 4.49025 4.60874 4.71149 4.88925 5.02619 5.12280 5.23401 5.46857 5.50792 5.67591 5.87725 6.31812 6.36009 6.97418 7.07761 7.53600 7.83212 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.019646 B = 0.007921 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.886994 B = 3533.925940 C = 4422.647891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.791 5.791 2 C 0.057 3.943 3 Si 1.043 2.957 4 H -0.282 1.282 5 H -0.307 1.307 6 H -0.279 1.279 7 C -0.393 4.393 8 H 0.097 0.903 9 C 0.194 3.806 10 N -0.568 5.568 11 C 0.107 3.893 12 C -0.117 4.117 13 N -0.392 5.392 14 C -0.010 4.010 15 C 0.071 3.929 16 C -0.154 4.154 17 C -0.209 4.209 18 S 0.291 5.709 19 C -0.306 4.306 20 C 0.549 3.451 21 O -0.524 6.524 22 O -0.497 6.497 23 H 0.307 0.693 24 H 0.174 0.826 25 H 0.164 0.836 26 H 0.141 0.859 27 H 0.209 0.791 28 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.635 -9.155 2.184 9.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.168 4.168 3 Si 0.875 3.125 4 H -0.208 1.208 5 H -0.238 1.238 6 H -0.205 1.205 7 C -0.424 4.424 8 H 0.115 0.885 9 C 0.069 3.931 10 N -0.291 5.291 11 C -0.058 4.058 12 C -0.276 4.276 13 N -0.104 5.104 14 C -0.161 4.161 15 C 0.053 3.947 16 C -0.185 4.185 17 C -0.346 4.346 18 S 0.560 5.440 19 C -0.425 4.425 20 C 0.393 3.607 21 O -0.415 6.415 22 O -0.310 6.310 23 H 0.118 0.882 24 H 0.191 0.809 25 H 0.181 0.819 26 H 0.159 0.841 27 H 0.226 0.774 28 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges 1.968 -10.438 2.179 10.843 hybrid contribution 0.853 2.446 -0.577 2.654 sum 2.821 -7.991 1.602 8.625 Atomic orbital electron populations 1.69538 1.09098 1.33090 1.29546 1.26980 0.95469 1.05318 0.88988 0.83924 0.75854 0.73466 0.79245 1.20849 1.23849 1.20544 1.19585 0.90510 0.96559 1.35721 0.88534 1.20469 0.94080 0.88003 0.90547 1.67513 1.11347 1.28176 1.22031 1.23668 0.90243 0.99453 0.92402 1.22896 1.01463 0.89987 1.13213 1.67798 1.10499 1.27796 1.04281 1.20778 0.90598 0.92927 1.11794 1.17927 0.93860 0.89912 0.92959 1.19978 1.01415 0.99624 0.97512 1.25578 1.05450 0.97226 1.06390 1.82326 1.42806 1.07945 1.10938 1.23799 1.16201 1.00199 1.02308 1.19412 0.76634 0.80917 0.83787 1.90984 1.45478 1.44627 1.60381 1.84938 1.73054 1.29130 1.43891 0.88214 0.80870 0.81896 0.84117 0.77373 0.71315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -39.55 13.92 21.87 0.30 -39.24 15 2 C 0.06 2.91 5.52 85.35 0.47 3.38 15 3 Si 1.04 47.65 25.41 68.60 1.74 49.40 15 4 H -0.28 -13.21 7.11 99.48 0.71 -12.51 15 5 H -0.31 -12.95 7.11 99.48 0.71 -12.24 15 6 H -0.28 -13.30 6.68 99.48 0.66 -12.63 15 7 C -0.39 -20.94 8.93 23.35 0.21 -20.73 15 8 H 0.10 5.20 6.27 -2.91 -0.02 5.18 15 9 C 0.19 10.29 6.45 41.54 0.27 10.56 15 10 N -0.57 -29.06 5.19 -184.09 -0.96 -30.02 15 11 C 0.11 4.76 11.17 84.96 0.95 5.71 15 12 C -0.12 -5.19 11.17 84.91 0.95 -4.24 15 13 N -0.39 -19.42 8.72 -178.82 -1.56 -20.98 15 14 C -0.01 -0.52 5.65 43.52 0.25 -0.27 15 15 C 0.07 3.09 5.00 -20.65 -0.10 2.98 15 16 C -0.15 -5.69 8.24 21.30 0.18 -5.52 15 17 C -0.21 -5.71 10.86 66.69 0.72 -4.99 15 18 S 0.29 7.76 22.91 -56.49 -1.29 6.46 15 19 C -0.31 -11.81 6.50 24.42 0.16 -11.65 15 20 C 0.55 21.19 8.25 69.92 0.58 21.76 15 21 O -0.52 -24.48 14.87 19.35 0.29 -24.19 15 22 O -0.50 -13.65 13.41 -58.47 -0.78 -14.44 15 23 H 0.31 13.70 8.29 -92.71 -0.77 12.93 15 24 H 0.17 6.07 8.06 -2.91 -0.02 6.04 15 25 H 0.16 6.02 8.06 -2.91 -0.02 5.99 15 26 H 0.14 5.33 7.97 -2.91 -0.02 5.30 15 27 H 0.21 3.84 8.06 -2.92 -0.02 3.82 15 28 H 0.43 7.70 8.98 -74.06 -0.67 7.04 15 Total: -1.00 -69.99 268.74 2.90 -67.09 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.53 Total: 8.93 kcal Atomic # 6 Polarization: -7.64 SS G_CDS: 4.62 Total: -3.01 kcal Atomic # 7 Polarization: -88.03 SS G_CDS: -2.21 Total: -90.24 kcal Atomic # 8 Polarization: -38.13 SS G_CDS: -0.50 Total: -38.62 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.74 Total: 49.40 kcal Atomic # 16 Polarization: 7.76 SS G_CDS: -1.29 Total: 6.46 kcal Total: -69.99 2.90 -67.09 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205378609.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.343 kcal (2) G-P(sol) polarization free energy of solvation -69.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds