Wall clock time and date at job start Mon Mar 30 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53005 * 109.46999 * 119.99641 * 2 1 3 5 5 C 1.53001 * 109.46967 * 174.99834 * 4 2 1 6 6 C 1.53005 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46911 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47137 * 54.99904 * 7 6 5 9 9 C 1.52999 * 109.46934 * 175.00377 * 7 6 5 10 10 N 1.46499 * 109.47043 * 294.99958 * 7 6 5 11 11 C 1.39679 * 119.99844 * 155.00252 * 10 7 6 12 12 C 1.39337 * 119.95599 * 359.97438 * 11 10 7 13 13 C 1.38477 * 120.42810 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32276 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.89653 * 0.02562 * 14 13 12 16 16 C 1.41404 * 120.20945 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99683 * 24.34653 * 16 15 14 18 18 C 1.39932 * 120.00417 * 204.33636 * 16 15 14 19 19 N 1.30832 * 119.99805 * 17.74037 * 18 16 15 20 20 Si 1.86795 * 120.00359 * 197.73971 * 18 16 15 21 21 H 1.48505 * 109.47053 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.47356 * 210.00085 * 20 18 16 23 23 H 1.48498 * 109.47041 * 330.00460 * 20 18 16 24 24 C 1.38285 * 119.94945 * 179.72324 * 11 10 7 25 25 H 1.08995 * 109.47438 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46784 * 60.00523 * 1 2 3 27 27 H 1.09004 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47391 * 239.99983 * 2 1 3 29 29 H 1.08992 * 109.47520 * 60.00031 * 3 2 1 30 30 H 1.09008 * 109.47070 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46926 * 299.99389 * 3 2 1 32 32 H 1.08999 * 109.46655 * 55.00423 * 4 2 1 33 33 H 1.08998 * 109.47026 * 295.00112 * 4 2 1 34 34 H 1.08998 * 109.47474 * 300.00003 * 5 4 2 35 35 H 1.09002 * 109.46967 * 60.00255 * 5 4 2 36 36 H 1.08998 * 109.47026 * 300.00277 * 6 5 4 37 37 H 1.08999 * 109.46655 * 60.00588 * 6 5 4 38 38 H 1.09007 * 109.46906 * 300.00000 * 9 7 6 39 39 H 1.09000 * 109.47293 * 59.99364 * 9 7 6 40 40 H 1.09000 * 109.47043 * 180.02562 * 9 7 6 41 41 H 0.97003 * 119.99758 * 335.00499 * 10 7 6 42 42 H 1.08001 * 119.78161 * 359.96131 * 12 11 10 43 43 H 1.07994 * 119.83720 * 180.02562 * 13 12 11 44 44 H 1.08000 * 120.05132 * 179.97438 * 14 13 12 45 45 H 0.96996 * 120.00352 * 179.97438 * 19 18 16 46 46 H 1.07998 * 120.16295 * 0.02715 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0747 -1.5528 2.4371 7 6 5.5996 -1.6621 2.3761 8 1 6.0299 -0.6697 2.2414 9 6 6.1198 -2.2710 3.6797 10 7 5.9833 -2.5175 1.2503 11 6 7.2407 -2.3724 0.6598 12 6 8.1293 -1.4134 1.1418 13 6 9.3786 -1.2616 0.5640 14 6 9.7567 -2.0578 -0.4937 15 6 8.8699 -3.0308 -0.9915 16 6 9.2511 -3.8518 -2.0779 17 1 10.2972 -4.0301 -2.2788 18 6 8.2732 -4.4332 -2.8925 19 7 7.0520 -3.9639 -2.8851 20 14 8.7113 -5.8795 -3.9905 21 1 8.4935 -7.1477 -3.2491 22 1 7.8516 -5.8601 -5.2012 23 1 10.1369 -5.7807 -4.3940 24 6 7.6040 -3.1843 -0.3991 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.8532 -1.3940 0.3004 35 1 3.9994 0.1675 1.1421 36 1 3.7863 -0.9902 3.3250 37 1 3.6401 -2.5514 2.4825 38 1 5.8343 -1.6345 4.5173 39 1 5.6895 -3.2634 3.8143 40 1 7.2062 -2.3484 3.6364 41 1 5.3640 -3.1846 0.9151 42 1 7.8417 -0.7844 1.9712 43 1 10.0599 -0.5156 0.9455 44 1 10.7319 -1.9354 -0.9413 45 1 6.3742 -4.3666 -3.4500 46 1 6.9175 -3.9304 -0.7712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205848307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:50 Heat of formation + Delta-G solvation = -21.529709 kcal Electronic energy + Delta-G solvation = -21192.699029 eV Core-core repulsion = 18273.124757 eV Total energy + Delta-G solvation = -2919.574272 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.30501 -37.16983 -35.78524 -33.52312 -32.16193 -30.25494 -29.37207 -27.24090 -26.97892 -26.12289 -25.11034 -22.06408 -21.33042 -20.46570 -19.92203 -19.43142 -17.21997 -15.88350 -15.62869 -14.97838 -14.79976 -14.51098 -14.20842 -14.11376 -13.63913 -13.12539 -12.97309 -12.73680 -12.51520 -12.31323 -12.13808 -11.90862 -11.82510 -11.61932 -11.51256 -11.37680 -11.15994 -11.01089 -10.85708 -10.82075 -10.59041 -10.38710 -10.37733 -10.29466 -10.08315 -9.55060 -9.36676 -9.18433 -8.69620 -7.25078 -6.68161 -6.07428 -4.26186 2.90925 3.12471 3.16209 3.29076 3.39742 4.01327 4.38906 4.66373 4.77503 4.84421 4.90548 5.17531 5.22862 5.33686 5.52218 5.58520 5.65003 5.69154 5.74922 5.76097 5.81839 5.89948 5.92507 5.94779 6.01759 6.07250 6.15507 6.20872 6.28334 6.33216 6.36675 6.48368 6.54333 6.58866 6.71397 6.95384 7.17976 7.20193 7.44953 7.51424 7.89100 8.02669 8.18059 8.23651 8.55697 8.80612 8.90937 9.07077 9.18922 10.30531 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004477 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.022845 B = 6252.116073 C = 7433.458027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.100 4.100 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.120 4.120 6 C -0.123 4.123 7 C 0.156 3.844 8 H 0.072 0.928 9 C -0.166 4.166 10 N -0.752 5.752 11 C 0.220 3.780 12 C -0.299 4.299 13 C -0.067 4.067 14 C -0.260 4.260 15 C 0.139 3.861 16 C -0.466 4.466 17 H 0.075 0.925 18 C 0.079 3.921 19 N -0.793 5.793 20 Si 0.903 3.097 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.263 1.263 24 C -0.233 4.233 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.070 0.930 35 H 0.062 0.938 36 H 0.065 0.935 37 H 0.060 0.940 38 H 0.050 0.950 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.387 0.613 42 H 0.086 0.914 43 H 0.084 0.916 44 H 0.086 0.914 45 H 0.276 0.724 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.032 4.832 7.256 14.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 C -0.206 4.206 4 C -0.150 4.150 5 C -0.157 4.157 6 C -0.161 4.161 7 C 0.049 3.951 8 H 0.090 0.910 9 C -0.225 4.225 10 N -0.385 5.385 11 C 0.121 3.879 12 C -0.322 4.322 13 C -0.086 4.086 14 C -0.280 4.280 15 C 0.136 3.864 16 C -0.496 4.496 17 H 0.093 0.907 18 C -0.138 4.138 19 N -0.419 5.419 20 Si 0.728 3.272 21 H -0.194 1.194 22 H -0.205 1.205 23 H -0.187 1.187 24 C -0.257 4.257 25 H 0.070 0.930 26 H 0.070 0.930 27 H 0.071 0.929 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.080 0.920 41 H 0.221 0.779 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -11.248 4.958 7.271 14.282 hybrid contribution -0.105 -0.870 -0.677 1.107 sum -11.353 4.087 6.595 13.751 Atomic orbital electron populations 1.21842 0.95695 1.01451 1.01372 1.21136 0.95201 0.96559 0.98931 1.21884 1.01656 0.95875 1.01163 1.21649 0.96081 0.99986 0.97263 1.21630 0.94411 1.00994 0.98690 1.21856 0.95326 1.00685 0.98243 1.20653 0.93094 0.94813 0.86513 0.91027 1.22302 1.02310 1.00583 0.97337 1.44507 1.15835 1.41830 1.36343 1.17640 0.84104 0.94242 0.91954 1.19904 0.96841 1.07417 1.08016 1.20282 0.94907 0.97523 0.95881 1.20846 1.01004 1.02710 1.03447 1.17312 0.90513 0.88617 0.89929 1.19557 0.93995 1.25773 1.10295 0.90676 1.25854 0.94513 0.96643 0.96837 1.69870 1.03134 1.35532 1.33344 0.86404 0.79649 0.81908 0.79244 1.19437 1.20489 1.18712 1.20723 1.00396 1.05021 0.99515 0.92984 0.92957 0.92883 0.91067 0.93048 0.92098 0.93094 0.92333 0.92462 0.91140 0.91900 0.91598 0.92078 0.93123 0.93095 0.92011 0.77937 0.89584 0.89799 0.89540 0.91289 0.86644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.19 37.16 0.34 -1.00 16 2 C -0.10 -1.07 2.92 -90.62 -0.26 -1.33 16 3 C -0.15 -1.55 8.95 37.16 0.33 -1.21 16 4 C -0.11 -1.21 4.68 -26.73 -0.13 -1.33 16 5 C -0.12 -1.53 4.86 -26.73 -0.13 -1.66 16 6 C -0.12 -1.52 4.75 -26.73 -0.13 -1.65 16 7 C 0.16 2.38 2.27 -67.93 -0.15 2.22 16 8 H 0.07 1.18 6.47 -51.93 -0.34 0.84 16 9 C -0.17 -2.37 9.42 37.16 0.35 -2.02 16 10 N -0.75 -14.10 4.70 -52.22 -0.25 -14.34 16 11 C 0.22 5.09 6.63 -83.86 -0.56 4.54 16 12 C -0.30 -6.81 8.86 -39.08 -0.35 -7.16 16 13 C -0.07 -1.57 10.02 -39.69 -0.40 -1.97 16 14 C -0.26 -6.66 9.79 -38.84 -0.38 -7.04 16 15 C 0.14 3.83 5.57 -106.85 -0.60 3.24 16 16 C -0.47 -12.76 9.05 -37.74 -0.34 -13.10 16 17 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 18 C 0.08 2.02 5.14 -17.34 -0.09 1.93 16 19 N -0.79 -20.86 10.95 55.55 0.61 -20.26 16 20 Si 0.90 19.14 29.59 -169.99 -5.03 14.11 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 23 H -0.26 -5.52 7.11 56.52 0.40 -5.12 16 24 C -0.23 -6.11 8.53 -38.67 -0.33 -6.44 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.69 6.57 -51.92 -0.34 0.35 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 1.06 7.75 -51.93 -0.40 0.66 16 35 H 0.06 0.83 6.57 -51.93 -0.34 0.49 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.00 7.70 -51.93 -0.40 0.60 16 41 H 0.39 7.05 8.61 -40.82 -0.35 6.69 16 42 H 0.09 1.77 6.08 -52.49 -0.32 1.46 16 43 H 0.08 1.72 8.06 -52.49 -0.42 1.30 16 44 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 45 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 46 H 0.12 3.14 6.16 -52.49 -0.32 2.81 16 LS Contribution 363.11 15.07 5.47 5.47 Total: -1.00 -27.59 363.11 -10.29 -37.88 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: -8.28 Total: 11.12 kcal Atomic # 6 Polarization: -31.17 SS G_CDS: -2.81 Total: -33.98 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: 0.36 Total: -34.60 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.03 Total: 14.11 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -27.59 -10.29 -37.88 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205848307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.350 kcal (2) G-P(sol) polarization free energy of solvation -27.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds