Wall clock time and date at job start Mon Mar 30 2020 01:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 C 1.53005 * 109.46999 * 119.99641 * 2 1 3 5 5 C 1.53001 * 109.46967 * 174.99834 * 4 2 1 6 6 C 1.53005 * 109.46967 * 180.02562 * 5 4 2 7 7 C 1.53002 * 109.46911 * 180.02562 * 6 5 4 8 8 H 1.08998 * 109.47137 * 54.99904 * 7 6 5 9 9 C 1.52999 * 109.46934 * 175.00377 * 7 6 5 10 10 N 1.46499 * 109.47043 * 294.99958 * 7 6 5 11 11 C 1.39679 * 119.99844 * 155.00252 * 10 7 6 12 12 C 1.39337 * 119.95599 * 359.97438 * 11 10 7 13 13 C 1.38477 * 120.42810 * 179.97438 * 12 11 10 14 14 C 1.37687 * 120.32276 * 359.97438 * 13 12 11 15 15 C 1.40748 * 119.89653 * 0.02562 * 14 13 12 16 16 C 1.41404 * 120.20945 * 179.97438 * 15 14 13 17 17 H 1.07997 * 119.99683 * 24.34653 * 16 15 14 18 18 C 1.39932 * 120.00417 * 204.33636 * 16 15 14 19 19 N 1.30832 * 119.99805 * 17.74037 * 18 16 15 20 20 Si 1.86795 * 120.00359 * 197.73971 * 18 16 15 21 21 H 1.48505 * 109.47053 * 89.99824 * 20 18 16 22 22 H 1.48498 * 109.47356 * 210.00085 * 20 18 16 23 23 H 1.48498 * 109.47041 * 330.00460 * 20 18 16 24 24 C 1.38285 * 119.94945 * 179.72324 * 11 10 7 25 25 H 1.08995 * 109.47438 * 300.00429 * 1 2 3 26 26 H 1.09004 * 109.46784 * 60.00523 * 1 2 3 27 27 H 1.09004 * 109.46925 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47391 * 239.99983 * 2 1 3 29 29 H 1.08992 * 109.47520 * 60.00031 * 3 2 1 30 30 H 1.09008 * 109.47070 * 180.02562 * 3 2 1 31 31 H 1.09004 * 109.46926 * 299.99389 * 3 2 1 32 32 H 1.08999 * 109.46655 * 55.00423 * 4 2 1 33 33 H 1.08998 * 109.47026 * 295.00112 * 4 2 1 34 34 H 1.08998 * 109.47474 * 300.00003 * 5 4 2 35 35 H 1.09002 * 109.46967 * 60.00255 * 5 4 2 36 36 H 1.08998 * 109.47026 * 300.00277 * 6 5 4 37 37 H 1.08999 * 109.46655 * 60.00588 * 6 5 4 38 38 H 1.09007 * 109.46906 * 300.00000 * 9 7 6 39 39 H 1.09000 * 109.47293 * 59.99364 * 9 7 6 40 40 H 1.09000 * 109.47043 * 180.02562 * 9 7 6 41 41 H 0.97003 * 119.99758 * 335.00499 * 10 7 6 42 42 H 1.08001 * 119.78161 * 359.96131 * 12 11 10 43 43 H 1.07994 * 119.83720 * 180.02562 * 13 12 11 44 44 H 1.08000 * 120.05132 * 179.97438 * 14 13 12 45 45 H 0.96996 * 120.00352 * 179.97438 * 19 18 16 46 46 H 1.07998 * 120.16295 * 0.02715 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1880 6 6 4.0747 -1.5528 2.4371 7 6 5.5996 -1.6621 2.3761 8 1 6.0299 -0.6697 2.2414 9 6 6.1198 -2.2710 3.6797 10 7 5.9833 -2.5175 1.2503 11 6 7.2407 -2.3724 0.6598 12 6 8.1293 -1.4134 1.1418 13 6 9.3786 -1.2616 0.5640 14 6 9.7567 -2.0578 -0.4937 15 6 8.8699 -3.0308 -0.9915 16 6 9.2511 -3.8518 -2.0779 17 1 10.2972 -4.0301 -2.2788 18 6 8.2732 -4.4332 -2.8925 19 7 7.0520 -3.9639 -2.8851 20 14 8.7113 -5.8795 -3.9905 21 1 8.4935 -7.1477 -3.2491 22 1 7.8516 -5.8601 -5.2012 23 1 10.1369 -5.7807 -4.3940 24 6 7.6040 -3.1843 -0.3991 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.6054 -1.7197 1.2952 33 1 1.7516 -0.1582 2.1370 34 1 3.8532 -1.3940 0.3004 35 1 3.9994 0.1675 1.1421 36 1 3.7863 -0.9902 3.3250 37 1 3.6401 -2.5514 2.4825 38 1 5.8343 -1.6345 4.5173 39 1 5.6895 -3.2634 3.8143 40 1 7.2062 -2.3484 3.6364 41 1 5.3640 -3.1846 0.9151 42 1 7.8417 -0.7844 1.9712 43 1 10.0599 -0.5156 0.9455 44 1 10.7319 -1.9354 -0.9413 45 1 6.3742 -4.3666 -3.4500 46 1 6.9175 -3.9304 -0.7712 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205848307.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:50 Heat of formation + Delta-G solvation = -33.391675 kcal Electronic energy + Delta-G solvation = -21193.213402 eV Core-core repulsion = 18273.124757 eV Total energy + Delta-G solvation = -2920.088646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.89706 -38.40616 -37.11151 -35.37089 -33.56633 -31.52906 -31.29284 -28.64462 -28.02671 -27.25452 -26.95842 -23.31479 -22.93184 -22.06021 -21.12309 -20.70180 -19.07652 -17.66027 -16.83205 -16.49366 -16.41437 -15.96337 -15.29994 -15.24770 -14.91115 -14.58090 -14.40037 -14.07493 -13.98905 -13.86576 -13.39210 -13.10843 -12.98748 -12.90581 -12.76057 -12.72288 -12.55917 -12.50189 -12.30131 -12.08892 -11.82436 -11.79730 -11.48127 -11.43569 -11.30511 -11.23779 -11.12098 -11.01777 -10.43376 -9.22904 -8.60950 -7.83974 -6.30959 1.10043 1.36355 1.37870 1.50728 1.59549 2.23127 2.81968 2.90380 3.70370 3.88661 3.96491 4.04288 4.17676 4.22559 4.31338 4.47908 4.55473 4.69405 4.73961 4.78658 4.79770 4.81292 4.84404 4.92869 4.95854 5.01739 5.05055 5.06441 5.10950 5.14195 5.21133 5.30485 5.33997 5.36240 5.40129 5.44565 5.50460 5.56399 5.59006 5.65102 5.99927 6.14088 6.23865 6.30955 6.61132 6.97500 7.08121 7.12738 7.30236 8.39346 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.014032 B = 0.004477 C = 0.003766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.022845 B = 6252.116073 C = 7433.458027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.103 4.103 3 C -0.147 4.147 4 C -0.105 4.105 5 C -0.116 4.116 6 C -0.113 4.113 7 C 0.151 3.849 8 H 0.063 0.937 9 C -0.160 4.160 10 N -0.745 5.745 11 C 0.226 3.774 12 C -0.300 4.300 13 C -0.064 4.064 14 C -0.289 4.289 15 C 0.109 3.891 16 C -0.506 4.506 17 H 0.070 0.930 18 C 0.039 3.961 19 N -0.822 5.822 20 Si 0.978 3.022 21 H -0.263 1.263 22 H -0.268 1.268 23 H -0.260 1.260 24 C -0.262 4.262 25 H 0.063 0.937 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.061 0.939 33 H 0.074 0.926 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.094 0.906 37 H 0.067 0.933 38 H 0.081 0.919 39 H 0.054 0.946 40 H 0.038 0.962 41 H 0.389 0.611 42 H 0.113 0.887 43 H 0.116 0.884 44 H 0.087 0.913 45 H 0.284 0.716 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.521 5.235 8.759 16.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.204 4.204 4 C -0.143 4.143 5 C -0.154 4.154 6 C -0.151 4.151 7 C 0.045 3.955 8 H 0.081 0.919 9 C -0.219 4.219 10 N -0.376 5.376 11 C 0.125 3.875 12 C -0.323 4.323 13 C -0.083 4.083 14 C -0.310 4.310 15 C 0.107 3.893 16 C -0.536 4.536 17 H 0.088 0.912 18 C -0.176 4.176 19 N -0.448 5.448 20 Si 0.799 3.201 21 H -0.188 1.188 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.286 4.286 25 H 0.082 0.918 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.068 0.932 29 H 0.083 0.917 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.057 0.943 35 H 0.075 0.925 36 H 0.113 0.887 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.222 0.778 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.095 0.905 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -12.766 5.378 8.808 16.415 hybrid contribution 0.302 -0.890 -1.048 1.407 sum -12.464 4.488 7.760 15.353 Atomic orbital electron populations 1.21806 0.94233 1.01843 1.02112 1.21149 0.96449 0.96469 0.98105 1.21869 1.00651 0.95912 1.02008 1.21592 0.94307 1.00471 0.97901 1.21565 0.96072 1.00091 0.97648 1.21802 0.92783 1.01477 0.99016 1.20920 0.95294 0.93598 0.85645 0.91906 1.22228 1.00711 1.01437 0.97516 1.44647 1.14184 1.42018 1.36778 1.17738 0.85704 0.93158 0.90920 1.20222 0.96452 1.07212 1.08364 1.20647 0.95655 0.97234 0.94758 1.20999 1.01211 1.03718 1.05050 1.17699 0.91583 0.89452 0.90615 1.19804 0.94303 1.27871 1.11655 0.91221 1.26683 0.94105 0.98857 0.97962 1.69929 1.04097 1.36642 1.34170 0.85272 0.79489 0.77915 0.77395 1.18772 1.19209 1.18381 1.20651 1.00252 1.06305 1.01377 0.91814 0.92667 0.92687 0.93184 0.91689 0.93622 0.92796 0.92034 0.90746 0.94317 0.92534 0.88749 0.91428 0.90021 0.92735 0.94255 0.77800 0.86958 0.86600 0.89462 0.90549 0.88432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.35 9.19 71.98 0.66 -1.69 16 2 C -0.10 -2.09 2.92 -10.79 -0.03 -2.13 16 3 C -0.15 -2.90 8.95 71.98 0.64 -2.25 16 4 C -0.11 -2.06 4.68 30.60 0.14 -1.92 16 5 C -0.12 -2.83 4.86 30.60 0.15 -2.68 16 6 C -0.11 -2.50 4.75 30.60 0.15 -2.35 16 7 C 0.15 4.31 2.27 44.99 0.10 4.41 16 8 H 0.06 1.94 6.47 -2.39 -0.02 1.92 16 9 C -0.16 -4.13 9.42 71.98 0.68 -3.46 16 10 N -0.75 -27.76 4.70 -319.12 -1.50 -29.26 16 11 C 0.23 10.63 6.63 38.17 0.25 10.88 16 12 C -0.30 -13.44 8.86 22.59 0.20 -13.24 16 13 C -0.06 -2.99 10.02 22.20 0.22 -2.77 16 14 C -0.29 -15.27 9.79 22.75 0.22 -15.05 16 15 C 0.11 6.28 5.57 -21.31 -0.12 6.16 16 16 C -0.51 -28.97 9.05 23.46 0.21 -28.76 16 17 H 0.07 3.88 7.91 -2.91 -0.02 3.86 16 18 C 0.04 2.04 5.14 85.25 0.44 2.47 16 19 N -0.82 -44.69 10.95 21.82 0.24 -44.45 16 20 Si 0.98 39.96 29.59 68.60 2.03 41.99 16 21 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 22 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 23 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 24 C -0.26 -14.29 8.53 22.86 0.20 -14.10 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 27 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.04 1.02 6.57 -2.38 -0.02 1.01 16 31 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.23 8.14 -2.39 -0.02 1.22 16 34 H 0.04 1.18 7.75 -2.39 -0.02 1.16 16 35 H 0.06 1.44 6.57 -2.39 -0.02 1.43 16 36 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 39 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.04 1.19 7.70 -2.39 -0.02 1.17 16 41 H 0.39 14.27 8.61 -92.71 -0.80 13.47 16 42 H 0.11 4.40 6.08 -2.91 -0.02 4.38 16 43 H 0.12 4.55 8.06 -2.91 -0.02 4.53 16 44 H 0.09 4.43 8.06 -2.91 -0.02 4.40 16 45 H 0.28 13.97 8.30 -92.71 -0.77 13.20 16 46 H 0.10 5.58 6.16 -2.91 -0.02 5.56 16 Total: -1.00 -61.88 363.11 5.02 -56.86 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.13 Total: 41.32 kcal Atomic # 6 Polarization: -70.58 SS G_CDS: 4.12 Total: -66.46 kcal Atomic # 7 Polarization: -72.45 SS G_CDS: -1.26 Total: -73.71 kcal Atomic # 14 Polarization: 39.96 SS G_CDS: 2.03 Total: 41.99 kcal Total: -61.88 5.02 -56.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205848307.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.472 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds