Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46739 * 2 1 4 4 N 1.46906 * 109.47228 * 174.87277 * 3 2 1 5 5 C 1.46898 * 111.00432 * 199.75073 * 4 3 2 6 6 C 1.50708 * 109.46698 * 66.04520 * 5 4 3 7 7 H 1.07992 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99771 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99834 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47193 * 90.00210 * 10 8 6 12 12 H 1.48504 * 109.47387 * 209.99561 * 10 8 6 13 13 H 1.48493 * 109.47506 * 330.00106 * 10 8 6 14 14 C 1.46900 * 110.99898 * 75.79687 * 4 3 2 15 15 C 1.52992 * 109.47304 * 199.64621 * 14 4 3 16 16 C 1.53005 * 109.47560 * 174.87677 * 15 14 4 17 17 C 1.52992 * 109.47560 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47544 * 179.97438 * 17 16 15 19 19 C 1.38243 * 119.99825 * 89.99618 * 18 17 16 20 20 C 1.38233 * 119.99864 * 179.97438 * 19 18 17 21 21 C 1.38245 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99543 * 0.28079 * 21 20 19 23 23 C 1.38229 * 120.00274 * 359.51070 * 22 21 20 24 24 H 1.09004 * 109.47324 * 60.00068 * 1 2 3 25 25 H 1.09002 * 109.46723 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46806 * 299.99531 * 1 2 3 27 27 H 1.09004 * 109.46840 * 240.00540 * 2 1 3 28 28 H 1.08991 * 109.47335 * 120.00306 * 2 1 3 29 29 H 1.09001 * 109.47290 * 54.87508 * 3 2 1 30 30 H 1.09003 * 109.47471 * 294.87174 * 3 2 1 31 31 H 1.08997 * 109.47224 * 186.04376 * 5 4 3 32 32 H 1.08999 * 109.47165 * 306.04811 * 5 4 3 33 33 H 0.96996 * 120.00430 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47251 * 79.64338 * 14 4 3 35 35 H 1.08998 * 109.47077 * 319.64827 * 14 4 3 36 36 H 1.08999 * 109.47460 * 54.87423 * 15 14 4 37 37 H 1.08999 * 109.47442 * 294.87756 * 15 14 4 38 38 H 1.08999 * 109.46942 * 59.99428 * 16 15 14 39 39 H 1.08999 * 109.46807 * 300.00467 * 16 15 14 40 40 H 1.08999 * 109.47460 * 59.99746 * 17 16 15 41 41 H 1.08999 * 109.47442 * 300.00079 * 17 16 15 42 42 H 1.07999 * 120.00314 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.00062 * 180.02562 * 20 19 18 44 44 H 1.07998 * 119.99915 * 180.02562 * 21 20 19 45 45 H 1.07999 * 119.99582 * 179.72061 * 22 21 20 46 46 H 1.07996 * 120.00271 * 180.27363 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4445 0.1238 5 6 3.9909 2.7491 0.5913 6 6 3.5116 2.9889 1.9998 7 1 2.9055 2.2466 2.4977 8 6 3.8462 4.1564 2.6525 9 7 4.5831 5.0610 2.0457 10 14 3.2527 4.4532 4.3986 11 1 4.2536 3.9222 5.3586 12 1 3.0786 5.9111 4.6212 13 1 1.9544 3.7625 4.6044 14 6 4.1399 1.0693 -1.1460 15 6 5.5743 0.6077 -0.8811 16 6 6.1946 0.0969 -2.1831 17 6 7.6287 -0.3652 -1.9180 18 6 8.2394 -0.8690 -3.2002 19 6 8.9194 0.0021 -4.0309 20 6 9.4800 -0.4601 -5.2069 21 6 9.3612 -1.7935 -5.5520 22 6 8.6767 -2.6634 -4.7239 23 6 8.1198 -2.2021 -3.5459 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6035 1.9822 0.8405 30 1 1.7535 1.9292 -0.9324 31 1 5.0806 2.7583 0.5717 32 1 3.6091 3.5345 -0.0610 33 1 4.8187 5.8823 2.5049 34 1 4.1528 1.9303 -1.8144 35 1 3.5770 0.2586 -1.6088 36 1 5.5675 -0.1941 -0.1428 37 1 6.1613 1.4447 -0.5029 38 1 6.2013 0.8987 -2.9214 39 1 5.6075 -0.7401 -2.5612 40 1 7.6215 -1.1672 -1.1798 41 1 8.2160 0.4714 -1.5396 42 1 9.0126 1.0437 -3.7611 43 1 10.0116 0.2203 -5.8556 44 1 9.7996 -2.1546 -6.4706 45 1 8.5800 -3.7041 -4.9958 46 1 7.5888 -2.8826 -2.8968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207610304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -6.961770 kcal Electronic energy + Delta-G solvation = -20536.938138 eV Core-core repulsion = 17617.995579 eV Total energy + Delta-G solvation = -2918.942559 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.38228 -37.37814 -35.02888 -33.08497 -32.41682 -30.97756 -30.97585 -27.90399 -26.82382 -24.79665 -23.24589 -22.65377 -21.60318 -20.94664 -20.54417 -19.54100 -16.83671 -16.42883 -15.59841 -15.28597 -14.97910 -14.57099 -14.41882 -14.39863 -13.56754 -13.51110 -13.38431 -13.33237 -12.90507 -12.45559 -12.20074 -12.04754 -11.90119 -11.63644 -11.36027 -11.28430 -11.06058 -10.93321 -10.82574 -10.74212 -10.62026 -10.45514 -10.28249 -10.12480 -9.94876 -9.53765 -9.12405 -9.01776 -8.72468 -8.39993 -7.16554 -5.99924 -4.00600 1.27705 1.30445 3.33416 3.39327 3.42923 3.69563 4.44587 4.67989 4.76315 4.87550 4.96785 5.04824 5.18571 5.34346 5.35505 5.43987 5.45450 5.47874 5.55722 5.64313 5.69362 5.83299 5.91586 5.98212 5.99799 6.05540 6.09424 6.17220 6.21959 6.28856 6.33840 6.36567 6.40438 6.41670 6.49603 6.58707 6.71526 6.76325 6.86725 6.90422 6.93001 7.37356 7.41953 7.85602 8.16671 8.29197 8.62082 9.07694 9.63324 11.10979 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003291 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.234825 B = 8506.473245 C = 9731.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C 0.061 3.939 4 N -0.539 5.539 5 C 0.192 3.808 6 C -0.505 4.505 7 H 0.063 0.937 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.896 3.104 11 H -0.280 1.280 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.057 3.943 15 C -0.112 4.112 16 C -0.109 4.109 17 C -0.083 4.083 18 C -0.073 4.073 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.132 4.132 22 C -0.121 4.121 23 C -0.120 4.120 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.015 0.985 31 H 0.032 0.968 32 H -0.013 1.013 33 H 0.260 0.740 34 H 0.021 0.979 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.058 0.942 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.119 0.881 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.040 -13.122 -12.733 18.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.067 4.067 4 N -0.263 5.263 5 C 0.067 3.933 6 C -0.544 4.544 7 H 0.081 0.919 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.724 3.276 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.072 4.072 15 C -0.150 4.150 16 C -0.147 4.147 17 C -0.121 4.121 18 C -0.073 4.073 19 C -0.137 4.137 20 C -0.138 4.138 21 C -0.150 4.150 22 C -0.139 4.139 23 C -0.138 4.138 24 H 0.066 0.934 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.033 0.967 31 H 0.050 0.950 32 H 0.005 0.995 33 H 0.070 0.930 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.092 0.908 42 H 0.140 0.860 43 H 0.137 0.863 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.245 -13.276 -12.345 18.872 hybrid contribution -0.415 0.939 0.238 1.054 sum 4.830 -12.337 -12.108 17.948 Atomic orbital electron populations 1.21736 0.96669 1.00711 1.01571 1.21531 0.94361 0.98026 1.01636 1.22022 0.89318 0.95225 1.00152 1.62097 1.04385 1.34066 1.25709 1.19742 0.95955 0.82615 0.94954 1.21188 1.32064 1.02506 0.98623 0.91907 1.24985 0.95425 0.96064 0.98175 1.69960 1.37813 1.08753 1.37374 0.86531 0.79173 0.77101 0.84802 1.20655 1.21382 1.19891 1.22027 0.94978 0.98344 0.91855 1.21548 0.95780 1.01419 0.96205 1.21531 0.94130 1.00487 0.98530 1.20675 0.96423 1.01350 0.93624 1.20064 0.96897 0.93549 0.96792 1.21133 0.98180 0.99734 0.94632 1.21148 0.99903 0.95768 0.96954 1.21107 1.00223 0.93871 0.99799 1.21129 0.98294 0.99562 0.94872 1.21093 1.00153 0.95372 0.97134 0.93351 0.93386 0.92670 0.93197 0.91483 0.89740 0.96657 0.94992 0.99472 0.93002 0.96062 0.92516 0.91420 0.91573 0.92265 0.92306 0.90878 0.90771 0.85987 0.86280 0.86449 0.86329 0.86094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.91 37.16 0.37 -1.67 16 2 C -0.12 -1.89 5.98 -26.73 -0.16 -2.05 16 3 C 0.06 1.21 4.79 -3.82 -0.02 1.19 16 4 N -0.54 -11.67 4.36 -236.07 -1.03 -12.70 16 5 C 0.19 5.04 4.55 -4.97 -0.02 5.02 16 6 C -0.51 -14.23 8.23 -34.44 -0.28 -14.51 16 7 H 0.06 1.76 7.31 -52.49 -0.38 1.37 16 8 C 0.05 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.84 13.29 55.43 0.74 -26.10 16 10 Si 0.90 21.76 29.54 -169.99 -5.02 16.73 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 14 C 0.06 1.03 4.81 -3.83 -0.02 1.01 16 15 C -0.11 -1.82 5.25 -26.73 -0.14 -1.96 16 16 C -0.11 -1.43 5.20 -26.73 -0.14 -1.57 16 17 C -0.08 -0.99 5.34 -27.89 -0.15 -1.14 16 18 C -0.07 -0.84 5.13 -104.62 -0.54 -1.38 16 19 C -0.12 -1.32 9.70 -39.58 -0.38 -1.71 16 20 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 21 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 22 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 23 C -0.12 -1.28 9.70 -39.58 -0.38 -1.66 16 24 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.05 0.75 6.90 -51.93 -0.36 0.40 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.08 1.85 6.58 -51.93 -0.34 1.51 16 30 H 0.02 0.30 8.00 -51.93 -0.42 -0.12 16 31 H 0.03 0.89 6.71 -51.93 -0.35 0.54 16 32 H -0.01 -0.36 8.12 -51.93 -0.42 -0.78 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.02 0.40 8.00 -51.93 -0.42 -0.01 16 35 H 0.06 0.93 6.56 -51.93 -0.34 0.59 16 36 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 37 H 0.07 1.21 6.95 -51.93 -0.36 0.85 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.83 8.08 -51.93 -0.42 0.41 16 41 H 0.07 0.89 8.09 -51.93 -0.42 0.47 16 42 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 43 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 44 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -29.95 369.58 -11.34 -41.28 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.43 Total: -1.00 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: -3.16 Total: -23.79 kcal Atomic # 7 Polarization: -38.51 SS G_CDS: -0.29 Total: -38.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.95 -11.34 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207610304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.320 kcal (2) G-P(sol) polarization free energy of solvation -29.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds