Wall clock time and date at job start Mon Mar 30 2020 01:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46739 * 2 1 4 4 N 1.46906 * 109.47228 * 174.87277 * 3 2 1 5 5 C 1.46898 * 111.00432 * 199.75073 * 4 3 2 6 6 C 1.50708 * 109.46698 * 66.04520 * 5 4 3 7 7 H 1.07992 * 119.99940 * 359.97438 * 6 5 4 8 8 C 1.37876 * 119.99771 * 180.02562 * 6 5 4 9 9 N 1.31516 * 120.00158 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 119.99834 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.47193 * 90.00210 * 10 8 6 12 12 H 1.48504 * 109.47387 * 209.99561 * 10 8 6 13 13 H 1.48493 * 109.47506 * 330.00106 * 10 8 6 14 14 C 1.46900 * 110.99898 * 75.79687 * 4 3 2 15 15 C 1.52992 * 109.47304 * 199.64621 * 14 4 3 16 16 C 1.53005 * 109.47560 * 174.87677 * 15 14 4 17 17 C 1.52992 * 109.47560 * 180.02562 * 16 15 14 18 18 C 1.50694 * 109.47544 * 179.97438 * 17 16 15 19 19 C 1.38243 * 119.99825 * 89.99618 * 18 17 16 20 20 C 1.38233 * 119.99864 * 179.97438 * 19 18 17 21 21 C 1.38245 * 120.00138 * 359.97438 * 20 19 18 22 22 C 1.38238 * 119.99543 * 0.28079 * 21 20 19 23 23 C 1.38229 * 120.00274 * 359.51070 * 22 21 20 24 24 H 1.09004 * 109.47324 * 60.00068 * 1 2 3 25 25 H 1.09002 * 109.46723 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46806 * 299.99531 * 1 2 3 27 27 H 1.09004 * 109.46840 * 240.00540 * 2 1 3 28 28 H 1.08991 * 109.47335 * 120.00306 * 2 1 3 29 29 H 1.09001 * 109.47290 * 54.87508 * 3 2 1 30 30 H 1.09003 * 109.47471 * 294.87174 * 3 2 1 31 31 H 1.08997 * 109.47224 * 186.04376 * 5 4 3 32 32 H 1.08999 * 109.47165 * 306.04811 * 5 4 3 33 33 H 0.96996 * 120.00430 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47251 * 79.64338 * 14 4 3 35 35 H 1.08998 * 109.47077 * 319.64827 * 14 4 3 36 36 H 1.08999 * 109.47460 * 54.87423 * 15 14 4 37 37 H 1.08999 * 109.47442 * 294.87756 * 15 14 4 38 38 H 1.08999 * 109.46942 * 59.99428 * 16 15 14 39 39 H 1.08999 * 109.46807 * 300.00467 * 16 15 14 40 40 H 1.08999 * 109.47460 * 59.99746 * 17 16 15 41 41 H 1.08999 * 109.47442 * 300.00079 * 17 16 15 42 42 H 1.07999 * 120.00314 * 359.97438 * 19 18 17 43 43 H 1.08001 * 120.00062 * 180.02562 * 20 19 18 44 44 H 1.07998 * 119.99915 * 180.02562 * 21 20 19 45 45 H 1.07999 * 119.99582 * 179.72061 * 22 21 20 46 46 H 1.07996 * 120.00271 * 180.27363 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5037 1.4445 0.1238 5 6 3.9909 2.7491 0.5913 6 6 3.5116 2.9889 1.9998 7 1 2.9055 2.2466 2.4977 8 6 3.8462 4.1564 2.6525 9 7 4.5831 5.0610 2.0457 10 14 3.2527 4.4532 4.3986 11 1 4.2536 3.9222 5.3586 12 1 3.0786 5.9111 4.6212 13 1 1.9544 3.7625 4.6044 14 6 4.1399 1.0693 -1.1460 15 6 5.5743 0.6077 -0.8811 16 6 6.1946 0.0969 -2.1831 17 6 7.6287 -0.3652 -1.9180 18 6 8.2394 -0.8690 -3.2002 19 6 8.9194 0.0021 -4.0309 20 6 9.4800 -0.4601 -5.2069 21 6 9.3612 -1.7935 -5.5520 22 6 8.6767 -2.6634 -4.7239 23 6 8.1198 -2.2021 -3.5459 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 1.6035 1.9822 0.8405 30 1 1.7535 1.9292 -0.9324 31 1 5.0806 2.7583 0.5717 32 1 3.6091 3.5345 -0.0610 33 1 4.8187 5.8823 2.5049 34 1 4.1528 1.9303 -1.8144 35 1 3.5770 0.2586 -1.6088 36 1 5.5675 -0.1941 -0.1428 37 1 6.1613 1.4447 -0.5029 38 1 6.2013 0.8987 -2.9214 39 1 5.6075 -0.7401 -2.5612 40 1 7.6215 -1.1672 -1.1798 41 1 8.2160 0.4714 -1.5396 42 1 9.0126 1.0437 -3.7611 43 1 10.0116 0.2203 -5.8556 44 1 9.7996 -2.1546 -6.4706 45 1 8.5800 -3.7041 -4.9958 46 1 7.5888 -2.8826 -2.8968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207610304.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:40 Heat of formation + Delta-G solvation = -21.337363 kcal Electronic energy + Delta-G solvation = -20537.561510 eV Core-core repulsion = 17617.995579 eV Total energy + Delta-G solvation = -2919.565932 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.17961 -39.01285 -36.18060 -34.95482 -33.91457 -32.23967 -31.72973 -29.48347 -28.35005 -26.27341 -24.79706 -23.41448 -23.08305 -22.13528 -21.63070 -21.15755 -18.58170 -17.58642 -16.94286 -16.49292 -16.20440 -16.15431 -15.86162 -15.65031 -15.08536 -14.79921 -14.29102 -14.23247 -14.12583 -13.88821 -13.67734 -13.63539 -13.15291 -13.01690 -12.79255 -12.61424 -12.52577 -12.30167 -12.25418 -12.14281 -11.95952 -11.80788 -11.63475 -11.51211 -11.48671 -11.22866 -11.07881 -10.59378 -9.78736 -9.54467 -8.98578 -8.20109 -6.29700 0.48999 0.53432 1.40019 1.41629 1.52593 2.40096 2.90715 3.11926 3.28419 3.85099 3.94170 4.08219 4.15011 4.15505 4.22157 4.32191 4.33363 4.39161 4.52459 4.56122 4.64544 4.68540 4.70270 4.76232 4.84085 4.87394 4.95152 4.98248 5.02017 5.12741 5.18576 5.21035 5.23298 5.25940 5.28654 5.38259 5.44026 5.50114 5.52903 5.62076 5.65743 5.67283 5.79956 6.08932 6.17339 6.40410 6.69672 6.87310 7.39737 8.91122 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.017235 B = 0.003291 C = 0.002876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.234825 B = 8506.473245 C = 9731.974599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 C 0.060 3.940 4 N -0.544 5.544 5 C 0.210 3.790 6 C -0.521 4.521 7 H 0.062 0.938 8 C 0.001 3.999 9 N -0.935 5.935 10 Si 0.968 3.032 11 H -0.273 1.273 12 H -0.282 1.282 13 H -0.264 1.264 14 C 0.056 3.944 15 C -0.103 4.103 16 C -0.096 4.096 17 C -0.078 4.078 18 C -0.090 4.090 19 C -0.137 4.137 20 C -0.128 4.128 21 C -0.135 4.135 22 C -0.125 4.125 23 C -0.130 4.130 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.047 0.953 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.016 0.984 31 H 0.008 0.992 32 H -0.047 1.047 33 H 0.264 0.736 34 H 0.009 0.991 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.073 0.927 40 H 0.079 0.921 41 H 0.064 0.936 42 H 0.120 0.880 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.493 -15.239 -13.243 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.068 4.068 4 N -0.268 5.268 5 C 0.083 3.917 6 C -0.559 4.559 7 H 0.080 0.920 8 C -0.197 4.197 9 N -0.576 5.576 10 Si 0.792 3.208 11 H -0.198 1.198 12 H -0.208 1.208 13 H -0.188 1.188 14 C -0.072 4.072 15 C -0.141 4.141 16 C -0.134 4.134 17 C -0.115 4.115 18 C -0.090 4.090 19 C -0.155 4.155 20 C -0.145 4.145 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.091 0.909 26 H 0.066 0.934 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.026 0.974 32 H -0.029 1.029 33 H 0.073 0.927 34 H 0.027 0.973 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.055 0.945 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.083 0.917 42 H 0.139 0.861 43 H 0.155 0.845 44 H 0.160 0.840 45 H 0.160 0.840 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.690 -15.414 -12.867 20.619 hybrid contribution -0.219 1.582 0.312 1.627 sum 4.471 -13.833 -12.555 19.208 Atomic orbital electron populations 1.21705 0.94505 1.02375 1.01647 1.21441 0.96157 0.94895 1.02002 1.22080 0.87950 0.97815 0.98948 1.62095 1.05838 1.30957 1.27877 1.19370 0.94281 0.83991 0.94043 1.21469 1.32146 1.02793 0.99496 0.92016 1.25913 0.95372 0.95684 1.02750 1.70091 1.38874 1.09288 1.39331 0.85407 0.79029 0.77188 0.79158 1.19806 1.20777 1.18835 1.22149 0.96190 0.98656 0.90163 1.21455 0.94446 1.00246 0.97954 1.21397 0.95000 1.00631 0.96343 1.20578 0.95404 1.01191 0.94376 1.20060 0.97909 0.94305 0.96679 1.21290 0.98908 0.99876 0.95440 1.21426 0.99746 0.96646 0.96729 1.21469 0.99641 0.93564 1.00576 1.21463 0.97607 1.00846 0.94355 1.21305 1.00460 0.95099 0.97891 0.92594 0.90889 0.93369 0.91563 0.92272 0.92488 0.96566 0.97429 1.02919 0.92744 0.97266 0.89738 0.91435 0.94498 0.92755 0.90846 0.90279 0.91731 0.86150 0.84548 0.84025 0.84014 0.85012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.91 71.98 0.71 -2.90 16 2 C -0.11 -3.27 5.98 30.59 0.18 -3.09 16 3 C 0.06 2.40 4.79 86.30 0.41 2.81 16 4 N -0.54 -24.13 4.36 -900.79 -3.92 -28.05 16 5 C 0.21 11.52 4.55 85.56 0.39 11.91 16 6 C -0.52 -30.19 8.23 25.60 0.21 -29.97 16 7 H 0.06 3.52 7.31 -2.91 -0.02 3.50 16 8 C 0.00 0.03 5.46 84.65 0.46 0.50 16 9 N -0.94 -57.37 13.29 21.45 0.28 -57.08 16 10 Si 0.97 45.00 29.54 68.60 2.03 47.03 16 11 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 14 C 0.06 2.07 4.81 86.30 0.41 2.48 16 15 C -0.10 -3.43 5.25 30.59 0.16 -3.27 16 16 C -0.10 -2.49 5.20 30.59 0.16 -2.33 16 17 C -0.08 -1.86 5.34 29.84 0.16 -1.70 16 18 C -0.09 -2.02 5.13 -19.87 -0.10 -2.12 16 19 C -0.14 -3.01 9.70 22.27 0.22 -2.80 16 20 C -0.13 -2.38 10.05 22.27 0.22 -2.15 16 21 C -0.13 -2.24 10.05 22.27 0.22 -2.02 16 22 C -0.12 -2.13 10.05 22.27 0.22 -1.91 16 23 C -0.13 -2.57 9.70 22.27 0.22 -2.35 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 27 H 0.07 1.81 6.90 -2.38 -0.02 1.80 16 28 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 29 H 0.06 2.56 6.58 -2.39 -0.02 2.55 16 30 H 0.02 0.63 8.00 -2.39 -0.02 0.61 16 31 H 0.01 0.45 6.71 -2.39 -0.02 0.44 16 32 H -0.05 -2.83 8.12 -2.39 -0.02 -2.85 16 33 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 34 H 0.01 0.36 8.00 -2.39 -0.02 0.34 16 35 H 0.08 2.63 6.56 -2.39 -0.02 2.62 16 36 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.04 1.43 6.95 -2.39 -0.02 1.41 16 38 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 40 H 0.08 1.75 8.08 -2.39 -0.02 1.74 16 41 H 0.06 1.62 8.09 -2.39 -0.02 1.60 16 42 H 0.12 2.55 8.06 -2.91 -0.02 2.53 16 43 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 44 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 45 H 0.14 1.69 8.06 -2.91 -0.02 1.67 16 46 H 0.13 2.22 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.99 369.58 3.55 -62.44 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: 0.90 Total: 14.58 kcal Atomic # 6 Polarization: -43.18 SS G_CDS: 4.27 Total: -38.91 kcal Atomic # 7 Polarization: -81.49 SS G_CDS: -3.64 Total: -85.13 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 2.03 Total: 47.03 kcal Total: -65.99 3.55 -62.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207610304.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.098 kcal (2) G-P(sol) polarization free energy of solvation -65.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds