Wall clock time and date at job start Mon Mar 30 2020 01:33:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 5 5 C 1.50706 * 109.47238 * 294.99946 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 14 14 N 1.46897 * 109.46940 * 64.99631 * 13 2 1 15 15 C 1.48498 * 110.99787 * 69.87514 * 14 13 2 16 16 C 1.54249 * 104.77574 * 159.41279 * 15 14 13 17 17 H 1.08994 * 113.00885 * 100.37006 * 16 15 14 18 18 C 1.56104 * 107.91181 * 226.12888 * 16 15 14 19 19 H 1.09004 * 116.23306 * 273.77209 * 18 16 15 20 20 C 1.53350 * 104.13594 * 43.92458 * 18 16 15 21 21 C 1.31787 * 108.40778 * 70.25275 * 20 18 16 22 22 C 1.53349 * 108.42982 * 0.02562 * 21 20 18 23 23 H 1.09001 * 116.27458 * 159.61209 * 22 21 20 24 24 C 1.57214 * 99.83784 * 33.29273 * 22 21 20 25 25 C 1.55763 * 104.74462 * 335.93968 * 16 15 14 26 26 C 1.53008 * 113.18313 * 124.32510 * 25 16 15 27 27 C 1.48493 * 111.00093 * 185.25821 * 14 13 2 28 28 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 30 30 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 31 31 H 1.09001 * 109.46832 * 175.00260 * 4 2 1 32 32 H 1.09000 * 109.47611 * 55.00557 * 4 2 1 33 33 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47139 * 184.99680 * 13 2 1 35 35 H 1.08997 * 109.47230 * 305.00195 * 13 2 1 36 36 H 1.08997 * 110.37740 * 278.23525 * 15 14 13 37 37 H 1.09001 * 110.37793 * 40.47716 * 15 14 13 38 38 H 1.07996 * 125.79328 * 250.22644 * 20 18 16 39 39 H 1.08004 * 125.78260 * 179.97438 * 21 20 18 40 40 H 1.09003 * 112.52072 * 194.55900 * 24 22 21 41 41 H 1.08994 * 112.52420 * 66.69635 * 24 22 21 42 42 H 1.09000 * 109.46853 * 59.99711 * 26 25 16 43 43 H 1.09000 * 109.47244 * 179.97438 * 26 25 16 44 44 H 1.09001 * 109.47157 * 300.00065 * 26 25 16 45 45 H 1.09001 * 110.37491 * 319.44456 * 27 14 13 46 46 H 1.08995 * 110.37844 * 81.78834 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.7411 1.7739 4.8434 11 1 0.6450 -0.2868 6.1186 12 1 2.7162 0.9685 5.9963 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4095 1.3109 -2.5377 16 6 2.3154 1.7182 -4.0225 17 1 1.5619 2.4837 -4.2073 18 6 3.7423 2.1378 -4.4966 19 1 4.0227 3.1763 -4.3199 20 6 4.6633 1.0604 -3.9114 21 6 4.4445 -0.0686 -4.5551 22 6 3.3631 0.1788 -5.6139 23 1 3.3183 -0.5374 -6.4344 24 6 3.6968 1.6668 -5.9961 25 6 2.0567 0.3842 -4.7839 26 6 0.7961 0.4198 -5.6503 27 6 2.0192 -0.6958 -3.6834 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7198 1.2952 33 1 2.9245 -1.8410 4.7318 34 1 3.1263 -0.7994 -1.2056 35 1 1.6055 -1.7198 -1.2952 36 1 1.9516 2.0717 -1.9057 37 1 3.4494 1.1552 -2.2503 38 1 5.3714 1.2028 -3.1085 39 1 4.9430 -1.0085 -4.3690 40 1 2.8942 2.1432 -6.5592 41 1 4.6616 1.7638 -6.4938 42 1 0.8888 1.2110 -6.3943 43 1 0.6739 -0.5392 -6.1537 44 1 -0.0723 0.6133 -5.0205 45 1 2.9996 -1.1592 -3.5728 46 1 1.2667 -1.4490 -3.9163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207691228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:14 Heat of formation + Delta-G solvation = 32.668952 kcal Electronic energy + Delta-G solvation = -22371.076943 eV Core-core repulsion = 19453.852901 eV Total energy + Delta-G solvation = -2917.224042 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.91952 -37.12576 -34.55207 -32.61933 -31.72295 -30.57965 -28.49964 -26.99721 -26.41047 -25.67905 -24.63479 -22.72134 -20.81658 -20.44709 -19.77401 -18.80457 -17.33917 -16.54171 -16.33444 -15.74602 -15.18679 -14.44381 -14.17713 -13.63487 -13.50315 -13.30992 -12.96729 -12.71332 -12.45766 -12.35086 -12.14257 -11.93585 -11.64333 -11.35082 -11.29818 -11.20105 -11.04750 -10.85588 -10.81281 -10.65807 -10.48107 -10.39607 -10.24363 -10.16288 -10.09795 -9.57563 -9.08565 -8.98502 -8.84034 -8.30213 -7.91697 -5.94939 -3.95687 2.17780 3.33639 3.41131 3.45522 4.19500 4.26276 4.37836 4.49885 4.68937 4.86240 4.96283 5.02162 5.16529 5.17855 5.30740 5.39088 5.41025 5.48071 5.51307 5.65765 5.72500 5.75074 5.81405 5.83646 5.85580 5.99871 6.04473 6.06234 6.10588 6.18478 6.22179 6.27419 6.31589 6.42879 6.49029 6.60117 6.75655 6.88898 7.08045 7.13791 7.25869 7.32925 7.51645 7.73542 7.89857 8.05923 8.50501 9.11001 9.67601 11.16719 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.003939 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.156617 B = 7107.226182 C = 7301.771739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.078 4.078 3 H 0.053 0.947 4 C 0.027 3.973 5 C -0.510 4.510 6 H 0.056 0.944 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.051 3.949 14 N -0.503 5.503 15 C 0.035 3.965 16 C -0.083 4.083 17 H 0.089 0.911 18 C -0.075 4.075 19 H 0.098 0.902 20 C -0.160 4.160 21 C -0.169 4.169 22 C -0.069 4.069 23 H 0.097 0.903 24 C -0.119 4.119 25 C -0.058 4.058 26 C -0.124 4.124 27 C 0.037 3.963 28 H 0.038 0.962 29 H 0.052 0.948 30 H 0.042 0.958 31 H 0.011 0.989 32 H 0.015 0.985 33 H 0.258 0.742 34 H 0.028 0.972 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.124 0.876 39 H 0.123 0.877 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.053 0.947 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.270 4.856 -21.441 22.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.097 4.097 3 H 0.072 0.928 4 C -0.011 4.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.717 3.283 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 C -0.077 4.077 14 N -0.226 5.226 15 C -0.093 4.093 16 C -0.102 4.102 17 H 0.107 0.893 18 C -0.094 4.094 19 H 0.117 0.883 20 C -0.178 4.178 21 C -0.187 4.187 22 C -0.088 4.088 23 H 0.115 0.885 24 C -0.157 4.157 25 C -0.059 4.059 26 C -0.181 4.181 27 C -0.091 4.091 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.046 0.954 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.073 0.927 38 H 0.142 0.858 39 H 0.140 0.860 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.071 0.929 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.750 4.810 -21.236 21.787 hybrid contribution 0.798 0.101 1.181 1.429 sum 1.548 4.911 -20.055 20.706 Atomic orbital electron populations 1.21574 0.95833 1.00415 1.00087 1.21150 0.95876 0.98941 0.93690 0.92825 1.19134 0.95808 0.95559 0.90583 1.21279 1.34313 1.08235 0.90978 0.92551 1.25019 0.95378 0.95103 0.99072 1.69985 1.39261 1.21328 1.23188 0.86586 0.78235 0.80163 0.83336 1.19743 1.21086 1.21144 1.22447 0.97454 0.97413 0.90346 1.65425 1.52146 1.03603 1.01440 1.23284 0.97237 0.93509 0.95229 1.23144 0.95722 0.96556 0.94810 0.89279 1.22995 0.94046 0.97641 0.94682 0.88343 1.23901 0.98729 0.95653 0.99521 1.23866 0.97993 0.97941 0.98855 1.22992 0.93240 0.96585 0.95944 0.88522 1.24045 1.01009 0.94780 0.95839 1.22392 0.94055 0.94897 0.94522 1.21560 0.96518 1.01256 0.98781 1.23300 0.99652 0.95993 0.90164 0.94299 0.92877 0.93937 0.97076 0.96658 0.93210 0.95397 0.91552 0.90612 0.92689 0.85813 0.85958 0.90814 0.91134 0.92786 0.92734 0.91779 0.92922 0.91038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.89 37.16 0.33 -2.14 16 2 C -0.08 -1.65 2.34 -90.62 -0.21 -1.86 16 3 H 0.05 1.16 7.04 -51.93 -0.37 0.80 16 4 C 0.03 0.70 4.45 -27.88 -0.12 0.58 16 5 C -0.51 -14.54 8.41 -34.44 -0.29 -14.83 16 6 H 0.06 1.58 7.06 -52.49 -0.37 1.21 16 7 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 8 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 9 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 10 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 13 C 0.05 0.94 4.20 -3.82 -0.02 0.92 16 14 N -0.50 -7.84 4.82 -230.27 -1.11 -8.95 16 15 C 0.04 0.51 4.91 -2.29 -0.01 0.49 16 16 C -0.08 -0.96 3.62 -86.83 -0.31 -1.28 16 17 H 0.09 0.99 8.02 -51.93 -0.42 0.58 16 18 C -0.08 -0.77 4.98 -86.47 -0.43 -1.20 16 19 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 20 C -0.16 -1.80 7.54 -34.87 -0.26 -2.07 16 21 C -0.17 -1.84 7.54 -34.87 -0.26 -2.10 16 22 C -0.07 -0.68 4.51 -86.47 -0.39 -1.06 16 23 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 24 C -0.12 -1.07 6.64 -22.14 -0.15 -1.21 16 25 C -0.06 -0.63 0.83 -150.71 -0.13 -0.76 16 26 C -0.12 -1.19 8.95 37.16 0.33 -0.86 16 27 C 0.04 0.49 5.33 -2.30 -0.01 0.47 16 28 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.14 6.95 -51.93 -0.36 0.78 16 30 H 0.04 0.78 7.75 -51.93 -0.40 0.38 16 31 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.53 7.88 -51.93 -0.41 0.12 16 35 H 0.07 1.23 8.13 -51.93 -0.42 0.80 16 36 H 0.08 1.17 7.62 -51.93 -0.40 0.77 16 37 H 0.06 0.83 5.24 -51.93 -0.27 0.56 16 38 H 0.12 1.40 8.01 -52.49 -0.42 0.98 16 39 H 0.12 1.28 8.01 -52.48 -0.42 0.86 16 40 H 0.07 0.60 7.46 -51.93 -0.39 0.21 16 41 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.45 7.47 -51.93 -0.39 0.06 16 43 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.05 0.72 5.41 -51.93 -0.28 0.44 16 46 H 0.07 0.94 7.94 -51.93 -0.41 0.53 16 LS Contribution 340.98 15.07 5.14 5.14 Total: -1.00 -29.92 340.98 -10.53 -40.45 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -8.24 Total: -1.55 kcal Atomic # 6 Polarization: -23.38 SS G_CDS: -2.03 Total: -25.42 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.37 Total: -35.59 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -29.92 -10.53 -40.45 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207691228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.115 kcal (2) G-P(sol) polarization free energy of solvation -29.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds