Wall clock time and date at job start Mon Mar 30 2020 01:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.46849 * 2 1 4 4 C 1.52997 * 109.47060 * 119.99880 * 2 1 3 5 5 C 1.50706 * 109.47238 * 294.99946 * 4 2 1 6 6 H 1.07999 * 119.99515 * 0.02562 * 5 4 2 7 7 C 1.37870 * 120.00176 * 180.02562 * 5 4 2 8 8 N 1.31520 * 119.99883 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00043 * 180.02562 * 7 5 4 10 10 H 1.48495 * 109.47216 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47389 * 119.99848 * 9 7 5 12 12 H 1.48501 * 109.47057 * 239.99829 * 9 7 5 13 13 C 1.53001 * 109.47333 * 239.99881 * 2 1 3 14 14 N 1.46897 * 109.46940 * 64.99631 * 13 2 1 15 15 C 1.48498 * 110.99787 * 69.87514 * 14 13 2 16 16 C 1.54249 * 104.77574 * 159.41279 * 15 14 13 17 17 H 1.08994 * 113.00885 * 100.37006 * 16 15 14 18 18 C 1.56104 * 107.91181 * 226.12888 * 16 15 14 19 19 H 1.09004 * 116.23306 * 273.77209 * 18 16 15 20 20 C 1.53350 * 104.13594 * 43.92458 * 18 16 15 21 21 C 1.31787 * 108.40778 * 70.25275 * 20 18 16 22 22 C 1.53349 * 108.42982 * 0.02562 * 21 20 18 23 23 H 1.09001 * 116.27458 * 159.61209 * 22 21 20 24 24 C 1.57214 * 99.83784 * 33.29273 * 22 21 20 25 25 C 1.55763 * 104.74462 * 335.93968 * 16 15 14 26 26 C 1.53008 * 113.18313 * 124.32510 * 25 16 15 27 27 C 1.48493 * 111.00093 * 185.25821 * 14 13 2 28 28 H 1.09006 * 109.46717 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47227 * 299.99845 * 1 2 3 30 30 H 1.09004 * 109.47014 * 60.00590 * 1 2 3 31 31 H 1.09001 * 109.46832 * 175.00260 * 4 2 1 32 32 H 1.09000 * 109.47611 * 55.00557 * 4 2 1 33 33 H 0.97004 * 119.99507 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47139 * 184.99680 * 13 2 1 35 35 H 1.08997 * 109.47230 * 305.00195 * 13 2 1 36 36 H 1.08997 * 110.37740 * 278.23525 * 15 14 13 37 37 H 1.09001 * 110.37793 * 40.47716 * 15 14 13 38 38 H 1.07996 * 125.79328 * 250.22644 * 20 18 16 39 39 H 1.08004 * 125.78260 * 179.97438 * 21 20 18 40 40 H 1.09003 * 112.52072 * 194.55900 * 24 22 21 41 41 H 1.08994 * 112.52420 * 66.69635 * 24 22 21 42 42 H 1.09000 * 109.46853 * 59.99711 * 26 25 16 43 43 H 1.09000 * 109.47244 * 179.97438 * 26 25 16 44 44 H 1.09001 * 109.47157 * 300.00065 * 26 25 16 45 45 H 1.09001 * 110.37491 * 319.44456 * 27 14 13 46 46 H 1.08995 * 110.37844 * 81.78834 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 1 1.0799 0.9742 2.3757 7 6 1.9932 -0.4015 3.7283 8 7 2.6772 -1.5181 3.8511 9 14 1.4984 0.5629 5.2496 10 1 0.7411 1.7739 4.8434 11 1 0.6450 -0.2868 6.1186 12 1 2.7162 0.9685 5.9963 13 6 2.0401 -0.7213 -1.2492 14 7 1.6514 0.0373 -2.4456 15 6 2.4095 1.3109 -2.5377 16 6 2.3154 1.7182 -4.0225 17 1 1.5619 2.4837 -4.2073 18 6 3.7423 2.1378 -4.4966 19 1 4.0227 3.1763 -4.3199 20 6 4.6633 1.0604 -3.9114 21 6 4.4445 -0.0686 -4.5551 22 6 3.3631 0.1788 -5.6139 23 1 3.3183 -0.5374 -6.4344 24 6 3.6968 1.6668 -5.9961 25 6 2.0567 0.3842 -4.7839 26 6 0.7961 0.4198 -5.6503 27 6 2.0192 -0.6958 -3.6834 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 3.1263 -0.7994 1.2056 32 1 1.6055 -1.7198 1.2952 33 1 2.9245 -1.8410 4.7318 34 1 3.1263 -0.7994 -1.2056 35 1 1.6055 -1.7198 -1.2952 36 1 1.9516 2.0717 -1.9057 37 1 3.4494 1.1552 -2.2503 38 1 5.3714 1.2028 -3.1085 39 1 4.9430 -1.0085 -4.3690 40 1 2.8942 2.1432 -6.5592 41 1 4.6616 1.7638 -6.4938 42 1 0.8888 1.2110 -6.3943 43 1 0.6739 -0.5392 -6.1537 44 1 -0.0723 0.6133 -5.0205 45 1 2.9996 -1.1592 -3.5728 46 1 1.2667 -1.4490 -3.9163 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207691228.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:33:13 Heat of formation + Delta-G solvation = 16.896516 kcal Electronic energy + Delta-G solvation = -22371.760887 eV Core-core repulsion = 19453.852901 eV Total energy + Delta-G solvation = -2917.907986 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.82435 -38.53063 -36.16460 -34.31823 -33.05709 -31.58325 -29.62028 -28.72075 -27.62024 -26.69854 -26.09367 -24.46221 -22.08515 -21.31310 -20.81200 -20.30061 -18.52884 -18.28334 -17.35847 -16.88487 -16.64548 -16.17820 -15.68544 -14.94846 -14.71735 -14.54638 -14.22160 -14.03951 -13.85719 -13.46242 -13.32740 -13.16407 -12.98929 -12.85235 -12.74154 -12.52447 -12.38681 -12.21562 -12.12432 -11.98338 -11.90601 -11.73352 -11.46361 -11.42262 -11.24649 -11.07801 -11.00722 -10.86065 -10.55975 -9.84625 -9.16005 -8.19425 -6.28881 1.31299 1.38445 1.38684 1.52168 2.40475 3.07792 3.13920 3.40774 3.50184 3.69230 3.97831 4.05778 4.09830 4.17634 4.27856 4.34162 4.36787 4.44878 4.50057 4.50969 4.65561 4.67370 4.75040 4.81506 4.87010 4.91031 4.93520 4.96551 5.05101 5.10018 5.12836 5.20852 5.24812 5.27587 5.31155 5.35507 5.43508 5.46121 5.47645 5.53348 5.61837 5.76421 5.85842 6.01630 6.03603 6.10062 6.29919 6.86686 7.39572 8.93041 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.031697 B = 0.003939 C = 0.003834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.156617 B = 7107.226182 C = 7301.771739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.067 4.067 3 H 0.048 0.952 4 C 0.034 3.966 5 C -0.528 4.528 6 H 0.060 0.940 7 C -0.002 4.002 8 N -0.936 5.936 9 Si 0.962 3.038 10 H -0.262 1.262 11 H -0.278 1.278 12 H -0.279 1.279 13 C 0.065 3.935 14 N -0.506 5.506 15 C 0.032 3.968 16 C -0.080 4.080 17 H 0.099 0.901 18 C -0.073 4.073 19 H 0.108 0.892 20 C -0.177 4.177 21 C -0.175 4.175 22 C -0.064 4.064 23 H 0.114 0.886 24 C -0.108 4.108 25 C -0.053 4.053 26 C -0.120 4.120 27 C 0.033 3.967 28 H 0.036 0.964 29 H 0.038 0.962 30 H 0.064 0.936 31 H -0.018 1.018 32 H -0.010 1.010 33 H 0.262 0.738 34 H 0.014 0.986 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.044 0.956 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.389 6.222 -23.218 24.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.086 4.086 3 H 0.066 0.934 4 C -0.004 4.004 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.577 5.577 9 Si 0.787 3.213 10 H -0.186 1.186 11 H -0.204 1.204 12 H -0.205 1.205 13 C -0.064 4.064 14 N -0.229 5.229 15 C -0.096 4.096 16 C -0.099 4.099 17 H 0.117 0.883 18 C -0.092 4.092 19 H 0.126 0.874 20 C -0.195 4.195 21 C -0.192 4.192 22 C -0.082 4.082 23 H 0.132 0.868 24 C -0.145 4.145 25 C -0.053 4.053 26 C -0.177 4.177 27 C -0.094 4.094 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.083 0.917 31 H 0.000 1.000 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.062 0.938 38 H 0.131 0.869 39 H 0.138 0.862 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.083 0.917 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.135 6.184 -23.032 23.848 hybrid contribution 1.118 -0.373 1.752 2.111 sum 0.982 5.811 -21.281 22.081 Atomic orbital electron populations 1.21452 0.94601 1.00344 1.00371 1.20942 0.96715 0.98106 0.92870 0.93365 1.19010 0.93821 0.94699 0.92855 1.21637 1.34376 1.08530 0.92037 0.92209 1.25959 0.95187 0.96097 1.02658 1.70118 1.40311 1.23015 1.24239 0.85441 0.78115 0.78896 0.78881 1.18574 1.20369 1.20462 1.22144 0.96382 0.97176 0.90651 1.65379 1.52317 1.04017 1.01170 1.23318 0.96228 0.92559 0.97468 1.23150 0.97008 0.97207 0.92487 0.88296 1.23037 0.92586 0.97820 0.95746 0.87364 1.24027 0.99187 0.96618 0.99640 1.24064 0.98250 0.97700 0.99234 1.23041 0.91661 0.97791 0.95714 0.86822 1.24011 1.02069 0.93679 0.94769 1.22395 0.95595 0.93280 0.94047 1.21544 0.94948 1.02569 0.98683 1.23403 0.99379 0.96798 0.89829 0.94517 0.94317 0.91735 0.99973 0.99212 0.92916 0.96727 0.91919 0.91911 0.93795 0.86872 0.86220 0.89179 0.90324 0.90916 0.91749 0.92932 0.93479 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.47 8.89 71.98 0.64 -3.83 16 2 C -0.07 -2.94 2.34 -10.79 -0.03 -2.97 16 3 H 0.05 2.15 7.04 -2.39 -0.02 2.13 16 4 C 0.03 1.85 4.45 29.85 0.13 1.98 16 5 C -0.53 -30.75 8.41 25.60 0.22 -30.54 16 6 H 0.06 3.37 7.06 -2.91 -0.02 3.35 16 7 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 8 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 9 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 10 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.75 7.11 99.48 0.71 -12.05 16 12 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 13 C 0.06 2.44 4.20 86.30 0.36 2.80 16 14 N -0.51 -15.62 4.82 -882.45 -4.26 -19.88 16 15 C 0.03 0.91 4.91 86.42 0.42 1.34 16 16 C -0.08 -1.69 3.62 -8.34 -0.03 -1.72 16 17 H 0.10 1.94 8.02 -2.39 -0.02 1.92 16 18 C -0.07 -1.36 4.98 -8.11 -0.04 -1.40 16 19 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 20 C -0.18 -3.90 7.54 25.79 0.19 -3.70 16 21 C -0.17 -3.64 7.54 25.79 0.19 -3.44 16 22 C -0.06 -1.07 4.51 -8.11 -0.04 -1.11 16 23 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 24 C -0.11 -1.57 6.64 33.57 0.22 -1.35 16 25 C -0.05 -1.03 0.83 -49.72 -0.04 -1.07 16 26 C -0.12 -1.93 8.95 71.98 0.64 -1.28 16 27 C 0.03 0.85 5.33 86.41 0.46 1.31 16 28 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 29 H 0.04 1.65 6.95 -2.39 -0.02 1.63 16 30 H 0.06 2.31 7.75 -2.39 -0.02 2.29 16 31 H -0.02 -1.08 8.14 -2.39 -0.02 -1.10 16 32 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.01 0.58 7.88 -2.39 -0.02 0.56 16 35 H 0.06 2.38 8.13 -2.39 -0.02 2.36 16 36 H 0.06 1.93 7.62 -2.39 -0.02 1.91 16 37 H 0.04 1.36 5.24 -2.39 -0.01 1.35 16 38 H 0.11 2.66 8.01 -2.91 -0.02 2.63 16 39 H 0.12 2.49 8.01 -2.91 -0.02 2.47 16 40 H 0.09 1.07 7.46 -2.39 -0.02 1.05 16 41 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.07 0.91 7.47 -2.39 -0.02 0.90 16 43 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.05 1.27 5.41 -2.39 -0.01 1.25 16 46 H 0.07 1.85 7.94 -2.39 -0.02 1.83 16 Total: -1.00 -65.06 340.98 2.76 -62.30 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.92 Total: 12.90 kcal Atomic # 6 Polarization: -48.41 SS G_CDS: 3.78 Total: -44.63 kcal Atomic # 7 Polarization: -73.98 SS G_CDS: -3.97 Total: -77.95 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -65.06 2.76 -62.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207691228.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.198 kcal (2) G-P(sol) polarization free energy of solvation -65.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.302 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds