Wall clock time and date at job start Mon Mar 30 2020 01:30:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 C 1.50700 * 109.47299 * 120.00509 * 2 1 3 5 5 C 1.38236 * 120.00330 * 119.99850 * 4 2 1 6 6 C 1.38231 * 120.00161 * 180.02562 * 5 4 2 7 7 C 1.38230 * 120.00173 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00122 * 179.69846 * 7 6 5 9 9 C 1.53001 * 109.46987 * 90.00249 * 8 7 6 10 10 H 1.09002 * 109.47362 * 305.00139 * 9 8 7 11 11 C 1.53004 * 109.47249 * 65.00269 * 9 8 7 12 12 C 1.53001 * 109.47223 * 184.99699 * 9 8 7 13 13 N 1.46501 * 109.47058 * 174.99678 * 12 9 8 14 14 C 1.46494 * 120.00105 * 270.00282 * 13 12 9 15 15 C 1.36934 * 119.99376 * 90.00566 * 13 12 9 16 16 H 1.07999 * 120.00781 * 22.15233 * 15 13 12 17 17 C 1.38816 * 119.99729 * 202.14828 * 15 13 12 18 18 N 1.31617 * 119.99872 * 11.54448 * 17 15 13 19 19 Si 1.86799 * 120.00083 * 191.55057 * 17 15 13 20 20 H 1.48498 * 109.47600 * 89.99933 * 19 17 15 21 21 H 1.48502 * 109.47159 * 209.99892 * 19 17 15 22 22 H 1.48499 * 109.47147 * 329.99780 * 19 17 15 23 23 C 1.38239 * 119.99821 * 359.97438 * 7 6 5 24 24 C 1.38236 * 120.00387 * 0.04809 * 23 7 6 25 25 H 1.08999 * 109.47102 * 299.99311 * 1 2 3 26 26 H 1.08996 * 109.47339 * 59.99811 * 1 2 3 27 27 H 1.09008 * 109.46986 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46648 * 240.00412 * 2 1 3 29 29 H 1.09005 * 109.46855 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47244 * 300.00247 * 3 2 1 31 31 H 1.09000 * 109.47098 * 60.00688 * 3 2 1 32 32 H 1.08007 * 119.99799 * 0.02562 * 5 4 2 33 33 H 1.07997 * 119.99656 * 179.97438 * 6 5 4 34 34 H 1.09002 * 109.47181 * 209.99761 * 8 7 6 35 35 H 1.08994 * 109.47478 * 330.00099 * 8 7 6 36 36 H 1.09001 * 109.47159 * 180.02562 * 11 9 8 37 37 H 1.09006 * 109.46942 * 299.99906 * 11 9 8 38 38 H 1.09002 * 109.47045 * 59.99676 * 11 9 8 39 39 H 1.08992 * 109.47560 * 295.00405 * 12 9 8 40 40 H 1.09005 * 109.46527 * 55.00385 * 12 9 8 41 41 H 1.08998 * 109.47481 * 94.23090 * 14 13 12 42 42 H 1.09010 * 109.47204 * 214.22877 * 14 13 12 43 43 H 1.09006 * 109.47542 * 334.22734 * 14 13 12 44 44 H 0.97004 * 120.00274 * 179.97438 * 18 17 15 45 45 H 1.08001 * 119.99898 * 179.97438 * 23 7 6 46 46 H 1.07992 * 120.00358 * 179.97438 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8271 -1.8344 1.1035 6 6 3.2874 -2.4864 2.2321 7 6 2.9536 -2.0143 3.4876 8 6 3.4498 -2.7290 4.7180 9 6 4.7998 -2.1442 5.1379 10 1 5.4933 -2.1916 4.2982 11 6 4.6138 -0.6865 5.5640 12 6 5.3625 -2.9503 6.3103 13 7 6.7068 -2.4668 6.6348 14 6 7.8763 -3.0616 5.9832 15 6 6.8701 -1.4590 7.5473 16 1 6.0995 -1.2618 8.2779 17 6 8.0262 -0.6908 7.5335 18 7 8.8584 -0.7724 6.5171 19 14 8.4009 0.4587 8.9574 20 1 9.1921 -0.2662 9.9839 21 1 9.1799 1.6221 8.4626 22 1 7.1286 0.9341 9.5578 23 6 2.1597 -0.8897 3.6146 24 6 1.6989 -0.2379 2.4860 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8900 29 1 3.1300 1.4424 -0.0005 30 1 1.6766 1.9563 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 3.0883 -2.2031 0.1225 33 1 3.9080 -3.3647 2.1329 34 1 2.7310 -2.6011 5.5273 35 1 3.5659 -3.7905 4.4996 36 1 5.5757 -0.2697 5.8627 37 1 4.2130 -0.1121 4.7287 38 1 3.9203 -0.6391 6.4036 39 1 4.7139 -2.8306 7.1780 40 1 5.4117 -4.0041 6.0361 41 1 8.1445 -2.4702 5.1078 42 1 8.7130 -3.0767 6.6817 43 1 7.6417 -4.0806 5.6753 44 1 9.6661 -0.2353 6.5072 45 1 1.8985 -0.5210 4.5955 46 1 1.0784 0.6404 2.5851 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001207936554.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:16 Heat of formation + Delta-G solvation = 15.364702 kcal Electronic energy + Delta-G solvation = -21388.936287 eV Core-core repulsion = 18470.961877 eV Total energy + Delta-G solvation = -2917.974411 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.63732 -36.94778 -35.49601 -33.52334 -31.02332 -30.73025 -29.48502 -27.28202 -26.30157 -25.79118 -25.41337 -22.94485 -22.09138 -21.04767 -19.83055 -19.08572 -16.70677 -16.21881 -15.53516 -15.00948 -14.64371 -14.16369 -14.02463 -13.87708 -13.62005 -13.54737 -13.26433 -12.99137 -12.83544 -12.48544 -12.15511 -11.83584 -11.71473 -11.59033 -11.23476 -11.21230 -11.06369 -10.87919 -10.79523 -10.67679 -10.54496 -10.41350 -10.19289 -10.08021 -9.90588 -9.69211 -9.64215 -8.70016 -8.44481 -8.23835 -6.65942 -5.64940 -3.08708 1.54559 1.60256 3.41581 3.48112 3.49076 3.93307 4.56010 4.61458 4.71973 5.07343 5.09837 5.15576 5.17972 5.34122 5.46397 5.48942 5.51034 5.59668 5.62846 5.67528 5.70451 5.81903 5.85412 5.94945 6.07766 6.08758 6.11537 6.12095 6.26705 6.34081 6.37885 6.48654 6.62992 6.69920 6.76181 6.80292 6.81698 6.93543 6.95715 7.21240 7.25816 7.46248 7.50647 7.80776 7.87684 8.47646 9.32007 9.95896 10.45228 11.40043 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.024392 B = 0.003723 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.661829 B = 7518.229717 C = 7941.708708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.054 4.054 3 C -0.144 4.144 4 C -0.092 4.092 5 C -0.118 4.118 6 C -0.118 4.118 7 C -0.065 4.065 8 C -0.080 4.080 9 C -0.101 4.101 10 H 0.061 0.939 11 C -0.136 4.136 12 C 0.157 3.843 13 N -0.602 5.602 14 C 0.165 3.835 15 C -0.242 4.242 16 H 0.067 0.933 17 C -0.001 4.001 18 N -0.909 5.909 19 Si 0.900 3.100 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.280 1.280 23 C -0.112 4.112 24 C -0.115 4.115 25 H 0.056 0.944 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.115 0.885 33 H 0.119 0.881 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.083 0.917 37 H 0.032 0.968 38 H 0.036 0.964 39 H 0.041 0.959 40 H 0.034 0.966 41 H 0.026 0.974 42 H 0.043 0.957 43 H -0.006 1.006 44 H 0.251 0.749 45 H 0.119 0.881 46 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.234 -0.828 -11.704 19.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.073 4.073 3 C -0.202 4.202 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.136 4.136 7 C -0.065 4.065 8 C -0.118 4.118 9 C -0.122 4.122 10 H 0.079 0.921 11 C -0.193 4.193 12 C 0.029 3.971 13 N -0.324 5.324 14 C 0.020 3.980 15 C -0.372 4.372 16 H 0.085 0.915 17 C -0.199 4.199 18 N -0.555 5.555 19 Si 0.731 3.269 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.206 1.206 23 C -0.130 4.130 24 C -0.133 4.133 25 H 0.075 0.925 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.092 0.908 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.133 0.867 33 H 0.137 0.863 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.102 0.898 37 H 0.051 0.949 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.062 0.938 43 H 0.013 0.987 44 H 0.061 0.939 45 H 0.137 0.863 46 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -15.048 -0.748 -11.707 19.081 hybrid contribution 0.374 0.787 0.638 1.079 sum -14.674 0.039 -11.070 18.382 Atomic orbital electron populations 1.21850 0.94647 1.01822 1.01674 1.20080 0.95674 0.95993 0.95540 1.21860 1.01453 0.95195 1.01658 1.19735 0.98865 0.96184 0.94429 1.20964 0.98512 0.95827 0.98279 1.21019 1.00117 1.00368 0.92052 1.20001 0.95870 0.95555 0.95091 1.20782 0.98377 0.98550 0.94073 1.21803 0.93292 0.97111 1.00014 0.92062 1.21772 1.03179 0.95730 0.98611 1.20884 0.87367 0.94433 0.94389 1.43960 0.99703 1.40675 1.48056 1.20775 0.89165 0.90876 0.97184 1.19158 1.03444 1.08025 1.06584 0.91512 1.24988 0.99064 0.98458 0.97396 1.70067 1.13446 1.42966 1.29008 0.86311 0.78021 0.80438 0.82158 1.21656 1.21849 1.20564 1.21047 0.98047 0.95565 0.98380 1.20881 1.00587 0.99797 0.92026 0.92498 0.92683 0.92661 0.90819 0.92430 0.92681 0.92454 0.86688 0.86341 0.91562 0.91742 0.89769 0.94866 0.94499 0.94028 0.94786 0.95525 0.93793 0.98724 0.93913 0.86257 0.86694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 9.01 37.16 0.33 -0.87 16 2 C -0.05 -0.53 3.09 -91.77 -0.28 -0.81 16 3 C -0.14 -1.35 9.01 37.16 0.33 -1.01 16 4 C -0.09 -1.12 4.78 -104.62 -0.50 -1.62 16 5 C -0.12 -1.50 9.67 -39.58 -0.38 -1.88 16 6 C -0.12 -1.64 9.70 -39.59 -0.38 -2.02 16 7 C -0.07 -0.96 4.70 -104.63 -0.49 -1.45 16 8 C -0.08 -1.20 4.84 -27.88 -0.13 -1.34 16 9 C -0.10 -1.90 2.58 -90.62 -0.23 -2.13 16 10 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 11 C -0.14 -2.72 8.33 37.16 0.31 -2.41 16 12 C 0.16 3.24 5.21 -4.04 -0.02 3.21 16 13 N -0.60 -15.17 2.80 -181.12 -0.51 -15.68 16 14 C 0.16 4.14 9.01 59.84 0.54 4.68 16 15 C -0.24 -6.60 7.62 -15.06 -0.11 -6.71 16 16 H 0.07 1.80 7.84 -52.49 -0.41 1.39 16 17 C 0.00 -0.04 5.13 -17.43 -0.09 -0.13 16 18 N -0.91 -26.63 10.58 55.49 0.59 -26.04 16 19 Si 0.90 22.05 29.57 -169.99 -5.03 17.02 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C -0.11 -1.57 7.98 -39.58 -0.32 -1.89 16 24 C -0.11 -1.46 8.71 -39.58 -0.34 -1.80 16 25 H 0.06 0.48 7.39 -51.93 -0.38 0.09 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.07 0.67 7.88 -51.93 -0.41 0.26 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.54 7.39 -51.93 -0.38 0.15 16 32 H 0.12 1.23 7.95 -52.48 -0.42 0.82 16 33 H 0.12 1.53 8.06 -52.49 -0.42 1.10 16 34 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 35 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 36 H 0.08 2.05 6.35 -51.93 -0.33 1.73 16 37 H 0.03 0.61 6.28 -51.93 -0.33 0.29 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 39 H 0.04 0.84 8.03 -51.93 -0.42 0.43 16 40 H 0.03 0.65 7.86 -51.93 -0.41 0.24 16 41 H 0.03 0.72 7.42 -51.93 -0.39 0.33 16 42 H 0.04 1.18 7.18 -51.92 -0.37 0.81 16 43 H -0.01 -0.13 7.84 -51.93 -0.41 -0.54 16 44 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 45 H 0.12 1.58 8.05 -52.49 -0.42 1.16 16 46 H 0.12 1.26 7.10 -52.49 -0.37 0.88 16 LS Contribution 359.61 15.07 5.42 5.42 Total: -1.00 -29.30 359.61 -9.69 -38.99 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -8.38 Total: -1.54 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -1.78 Total: -18.18 kcal Atomic # 7 Polarization: -41.80 SS G_CDS: 0.08 Total: -41.72 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -29.30 -9.69 -38.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207936554.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.355 kcal (2) G-P(sol) polarization free energy of solvation -29.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds