Wall clock time and date at job start Mon Mar 30 2020 02:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30809 * 1 3 3 Si 1.86800 * 119.99910 * 2 1 4 4 H 1.48507 * 109.46838 * 274.64653 * 3 2 1 5 5 H 1.48492 * 109.47335 * 34.64527 * 3 2 1 6 6 H 1.48497 * 109.47101 * 154.65009 * 3 2 1 7 7 C 1.39999 * 120.00141 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00052 * 162.13250 * 7 2 1 9 9 C 1.41021 * 119.99595 * 342.14011 * 7 2 1 10 10 C 1.40981 * 120.09991 * 155.00457 * 9 7 2 11 11 C 1.36221 * 119.92568 * 180.29818 * 10 9 7 12 12 C 1.39943 * 120.14421 * 359.42580 * 11 10 9 13 13 C 1.47928 * 119.89766 * 180.32495 * 12 11 10 14 14 C 1.39631 * 120.15490 * 64.99861 * 13 12 11 15 15 C 1.37905 * 119.86677 * 179.72109 * 14 13 12 16 16 C 1.38431 * 120.17521 * 0.57404 * 15 14 13 17 17 C 1.38330 * 120.30952 * 359.67222 * 16 15 14 18 18 C 1.38095 * 120.13416 * 0.05190 * 17 16 15 19 19 Cl 1.73599 * 120.08817 * 179.97438 * 18 17 16 20 20 C 1.40157 * 120.20501 * 0.59433 * 12 11 10 21 21 F 1.35106 * 119.96519 * 179.71047 * 20 12 11 22 22 C 1.36477 * 120.07101 * 359.68388 * 20 12 11 23 23 H 0.96995 * 119.99610 * 0.02562 * 1 2 3 24 24 H 1.08000 * 120.03125 * 0.02562 * 10 9 7 25 25 H 1.08008 * 119.92431 * 179.71714 * 11 10 9 26 26 H 1.08002 * 120.06968 * 359.97438 * 14 13 12 27 27 H 1.08008 * 119.91129 * 180.27186 * 15 14 13 28 28 H 1.08002 * 119.84300 * 179.70260 * 16 15 14 29 29 H 1.08007 * 119.93393 * 180.02562 * 17 16 15 30 30 H 1.07997 * 120.06987 * 180.02562 * 22 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6178 0.0000 4 1 2.3913 2.1031 -1.3956 5 1 1.4921 2.6223 0.7959 6 1 3.5853 1.4138 0.5994 7 6 2.0081 -1.2124 0.0005 8 1 3.0490 -1.2351 -0.2864 9 6 1.3539 -2.4041 0.3756 10 6 1.8233 -3.6469 -0.0960 11 6 1.1850 -4.7954 0.2636 12 6 0.0717 -4.7451 1.1100 13 6 -0.6130 -5.9961 1.5028 14 6 0.0525 -6.9452 2.2813 15 6 -0.5934 -8.1069 2.6490 16 6 -1.8948 -8.3393 2.2384 17 6 -2.5593 -7.4063 1.4628 18 6 -1.9267 -6.2361 1.0919 19 17 -2.7614 -5.0665 0.1179 20 6 -0.4002 -3.5126 1.5820 21 9 -1.4790 -3.4693 2.3941 22 6 0.2293 -2.3563 1.2225 23 1 -0.4849 0.8400 -0.0004 24 1 2.6854 -3.6881 -0.7454 25 1 1.5419 -5.7472 -0.1015 26 1 1.0696 -6.7681 2.5983 27 1 -0.0808 -8.8395 3.2549 28 1 -2.3939 -9.2530 2.5255 29 1 -3.5747 -7.5937 1.1461 30 1 -0.1340 -1.4066 1.5866 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222431583.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:55 Heat of formation + Delta-G solvation = -31.771984 kcal Electronic energy + Delta-G solvation = -18121.259196 eV Core-core repulsion = 15013.271699 eV Total energy + Delta-G solvation = -3107.987497 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.52177 -40.27870 -38.95129 -37.23327 -35.76124 -33.14803 -31.61444 -31.00243 -30.38537 -27.13367 -23.95662 -23.49182 -22.79171 -21.83316 -19.54153 -18.21580 -17.65803 -16.83355 -16.71554 -16.46066 -16.43281 -15.80529 -15.38601 -14.80515 -14.61371 -14.40716 -14.26590 -13.92168 -13.52164 -13.19935 -12.81322 -12.66651 -12.46972 -12.35333 -12.29054 -12.03030 -11.89965 -11.70149 -11.40476 -11.10330 -9.88939 -9.63913 -9.39663 -9.13606 -8.74493 -6.46272 0.20373 0.36075 0.81979 0.99187 1.35857 1.37568 1.46733 1.54403 2.15830 2.56626 2.79110 3.54685 3.81355 3.90911 4.00166 4.20746 4.38699 4.48040 4.55407 4.76826 4.82488 5.00232 5.04439 5.06834 5.22591 5.34524 5.48896 5.55311 5.65623 5.72678 5.88591 5.95864 6.01940 6.23435 6.54066 6.78677 6.85657 8.19836 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.032081 B = 0.005270 C = 0.004902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.590885 B = 5311.853451 C = 5710.467610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.034 3.966 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.269 1.269 6 H -0.252 1.252 7 C -0.479 4.479 8 H 0.092 0.908 9 C 0.109 3.891 10 C -0.242 4.242 11 C -0.039 4.039 12 C -0.228 4.228 13 C -0.021 4.021 14 C -0.114 4.114 15 C -0.109 4.109 16 C -0.113 4.113 17 C -0.118 4.118 18 C -0.054 4.054 19 Cl -0.088 7.088 20 C 0.130 3.870 21 F -0.164 7.164 22 C -0.235 4.235 23 H 0.292 0.708 24 H 0.115 0.885 25 H 0.128 0.872 26 H 0.135 0.865 27 H 0.162 0.838 28 H 0.167 0.833 29 H 0.146 0.854 30 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.254 -11.260 3.122 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.184 4.184 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.193 1.193 6 H -0.175 1.175 7 C -0.507 4.507 8 H 0.110 0.890 9 C 0.106 3.894 10 C -0.262 4.262 11 C -0.058 4.058 12 C -0.230 4.230 13 C -0.022 4.022 14 C -0.133 4.133 15 C -0.127 4.127 16 C -0.131 4.131 17 C -0.137 4.137 18 C -0.080 4.080 19 Cl -0.060 7.060 20 C 0.111 3.889 21 F -0.143 7.143 22 C -0.255 4.255 23 H 0.103 0.897 24 H 0.133 0.867 25 H 0.146 0.854 26 H 0.153 0.847 27 H 0.180 0.820 28 H 0.184 0.816 29 H 0.164 0.836 30 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.588 -10.998 3.044 11.522 hybrid contribution -0.269 1.380 -0.168 1.416 sum -1.858 -9.619 2.876 10.210 Atomic orbital electron populations 1.69892 1.09511 1.31174 1.33257 1.26962 0.95396 1.05167 0.90834 0.85118 0.79315 0.75306 0.79617 1.18351 1.19343 1.17529 1.19959 0.98914 0.92012 1.39841 0.88992 1.17754 0.90111 0.93799 0.87753 1.20927 1.05107 0.92408 1.07718 1.20424 0.92859 0.97865 0.94614 1.18095 1.03539 0.89725 1.11680 1.18763 0.91965 0.94225 0.97237 1.21512 1.00742 0.93816 0.97182 1.21546 0.95175 0.96710 0.99243 1.21524 0.94872 0.99644 0.97015 1.21259 1.01109 0.91983 0.99331 1.21492 0.93841 0.92899 0.99791 1.98354 1.77868 1.59744 1.69994 1.17481 0.84582 0.94615 0.92269 1.91326 1.54029 1.97554 1.71437 1.20824 1.03034 0.95709 1.05968 0.89739 0.86669 0.85387 0.84734 0.82032 0.81591 0.83634 0.87684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -42.70 10.97 21.84 0.24 -42.46 16 2 C 0.03 1.65 5.13 85.27 0.44 2.08 16 3 Si 0.99 36.83 29.60 68.60 2.03 38.86 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 6 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 7 C -0.48 -24.87 9.03 23.38 0.21 -24.66 16 8 H 0.09 4.45 7.91 -2.91 -0.02 4.43 16 9 C 0.11 5.79 5.57 -21.28 -0.12 5.67 16 10 C -0.24 -11.41 9.73 22.47 0.22 -11.19 16 11 C -0.04 -1.70 9.66 22.21 0.21 -1.48 16 12 C -0.23 -10.23 4.70 -19.83 -0.09 -10.32 16 13 C -0.02 -0.80 5.00 -20.02 -0.10 -0.90 16 14 C -0.11 -3.44 9.74 22.53 0.22 -3.22 16 15 C -0.11 -2.44 10.03 22.24 0.22 -2.21 16 16 C -0.11 -2.40 10.04 22.34 0.22 -2.18 16 17 C -0.12 -3.22 9.82 22.26 0.22 -3.00 16 18 C -0.05 -1.93 6.15 22.59 0.14 -1.79 16 19 Cl -0.09 -3.49 26.79 -2.72 -0.07 -3.57 16 20 C 0.13 6.57 6.40 22.32 0.14 6.71 16 21 F -0.16 -8.26 16.03 44.97 0.72 -7.54 16 22 C -0.23 -12.85 8.60 22.50 0.19 -12.66 16 23 H 0.29 13.83 8.29 -92.71 -0.77 13.06 16 24 H 0.12 4.93 8.06 -2.91 -0.02 4.91 16 25 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 26 H 0.13 3.77 8.06 -2.91 -0.02 3.74 16 27 H 0.16 2.35 8.06 -2.91 -0.02 2.33 16 28 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 29 H 0.15 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.11 6.10 6.18 -2.91 -0.02 6.08 16 Total: -1.00 -61.42 285.02 6.22 -55.20 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 1.17 Total: 18.67 kcal Atomic # 6 Polarization: -61.29 SS G_CDS: 2.13 Total: -59.16 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.24 Total: -42.46 kcal Atomic # 9 Polarization: -8.26 SS G_CDS: 0.72 Total: -7.54 kcal Atomic # 14 Polarization: 36.83 SS G_CDS: 2.03 Total: 38.86 kcal Atomic # 17 Polarization: -3.49 SS G_CDS: -0.07 Total: -3.57 kcal Total: -61.42 6.22 -55.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222431583.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.428 kcal (2) G-P(sol) polarization free energy of solvation -61.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds