Wall clock time and date at job start Mon Mar 30 2020 02:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48494 * 109.47244 * 274.83436 * 3 2 1 5 5 H 1.48505 * 109.46854 * 34.83161 * 3 2 1 6 6 H 1.48498 * 109.46928 * 154.83151 * 3 2 1 7 7 C 1.40053 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99878 * 196.50654 * 7 2 1 9 9 C 1.40881 * 120.00161 * 16.51219 * 7 2 1 10 10 C 1.40718 * 120.31308 * 25.01883 * 9 7 2 11 11 C 1.37633 * 119.84147 * 179.97438 * 10 9 7 12 12 F 1.35104 * 119.74640 * 179.97438 * 11 10 9 13 13 C 1.39184 * 120.50692 * 359.97438 * 11 10 9 14 14 C 1.38015 * 120.65198 * 0.27928 * 13 11 10 15 15 C 1.39156 * 120.12735 * 359.44746 * 14 13 11 16 16 C 1.47829 * 120.24641 * 180.27461 * 15 14 13 17 17 C 1.39673 * 120.15993 * 65.00159 * 16 15 14 18 18 C 1.37899 * 119.86098 * 179.69582 * 17 16 15 19 19 C 1.38437 * 120.17934 * 0.59721 * 18 17 16 20 20 C 1.38345 * 120.31840 * 359.67854 * 19 18 17 21 21 C 1.38084 * 120.13760 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 120.09029 * 180.02562 * 21 20 19 23 23 H 0.97001 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.07938 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.67671 * 180.02562 * 13 11 10 26 26 H 1.07996 * 119.93469 * 179.72907 * 14 13 11 27 27 H 1.08004 * 120.06947 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.90860 * 180.32095 * 18 17 16 29 29 H 1.07994 * 119.84188 * 179.69613 * 19 18 17 30 30 H 1.08002 * 119.92800 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3871 2.1055 -1.3950 5 1 1.4939 2.6211 0.7997 6 1 3.5867 1.4129 0.5954 7 6 2.0081 -1.2129 -0.0005 8 1 3.0547 -1.2322 0.2652 9 6 1.3473 -2.4077 -0.3478 10 6 0.2070 -2.3750 -1.1716 11 6 -0.4307 -3.5482 -1.5053 12 9 -1.5257 -3.5145 -2.2960 13 6 0.0439 -4.7690 -1.0345 14 6 1.1574 -4.8245 -0.2210 15 6 1.8262 -3.6553 0.1284 16 6 3.0228 -3.7124 0.9946 17 6 4.1838 -4.3466 0.5466 18 6 5.2985 -4.3907 1.3573 19 6 5.2654 -3.8191 2.6177 20 6 4.1175 -3.1941 3.0712 21 6 2.9958 -3.1369 2.2680 22 17 1.5563 -2.3517 2.8380 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1665 -1.4317 -1.5419 25 1 -0.4667 -5.6814 -1.3050 26 1 1.5131 -5.7777 0.1413 27 1 4.2099 -4.7976 -0.4344 28 1 6.1982 -4.8764 1.0096 29 1 6.1399 -3.8612 3.2499 30 1 4.0986 -2.7506 4.0558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222440768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:41 Heat of formation + Delta-G solvation = -19.768037 kcal Electronic energy + Delta-G solvation = -18460.469296 eV Core-core repulsion = 15353.002329 eV Total energy + Delta-G solvation = -3107.466967 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -47.66127 -38.87897 -37.02034 -35.45952 -33.80340 -31.54295 -30.23801 -29.72268 -27.76360 -25.48584 -22.49819 -21.98386 -21.17032 -19.92753 -17.64158 -16.63055 -15.92981 -15.23276 -14.99812 -14.82283 -14.48417 -14.29466 -13.80164 -13.23804 -13.00194 -12.85189 -12.65357 -11.90745 -11.82132 -11.65717 -11.22975 -11.13886 -10.84287 -10.72924 -10.61568 -10.40094 -10.13025 -9.78084 -9.69537 -9.25966 -8.39318 -8.00439 -7.62056 -7.23292 -6.87766 -4.51877 1.71898 1.78028 2.59857 2.76136 3.01337 3.05194 3.07537 3.11476 3.83516 4.19543 4.44896 5.29371 5.30496 5.44058 5.51657 5.65239 5.81476 5.93467 6.16190 6.26720 6.33181 6.46915 6.72567 6.82555 6.87838 6.92800 7.01234 7.15434 7.30783 7.44101 7.62074 7.71542 7.83957 8.10881 8.43745 8.69296 8.74531 10.00952 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.010103 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.659243 B = 2770.741284 C = 4074.987450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.081 3.919 3 Si 0.902 3.098 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.258 1.258 7 C -0.428 4.428 8 H 0.082 0.918 9 C 0.156 3.844 10 C -0.198 4.198 11 C 0.109 3.891 12 F -0.168 7.168 13 C -0.283 4.283 14 C -0.040 4.040 15 C -0.200 4.200 16 C 0.029 3.971 17 C -0.115 4.115 18 C -0.124 4.124 19 C -0.133 4.133 20 C -0.121 4.121 21 C -0.020 4.020 22 Cl -0.051 7.051 23 H 0.284 0.716 24 H 0.131 0.869 25 H 0.099 0.901 26 H 0.098 0.902 27 H 0.124 0.876 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.577 -3.163 3.464 8.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.139 4.139 3 Si 0.726 3.274 4 H -0.191 1.191 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.456 4.456 8 H 0.100 0.900 9 C 0.153 3.847 10 C -0.218 4.218 11 C 0.090 3.910 12 F -0.147 7.147 13 C -0.303 4.303 14 C -0.058 4.058 15 C -0.201 4.201 16 C 0.029 3.971 17 C -0.133 4.133 18 C -0.143 4.143 19 C -0.152 4.152 20 C -0.140 4.140 21 C -0.046 4.046 22 Cl -0.021 7.021 23 H 0.095 0.905 24 H 0.149 0.851 25 H 0.118 0.882 26 H 0.116 0.884 27 H 0.142 0.858 28 H 0.135 0.865 29 H 0.136 0.864 30 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.185 -2.914 3.511 7.686 hybrid contribution -0.020 0.877 -0.022 0.878 sum 6.165 -2.037 3.490 7.371 Atomic orbital electron populations 1.69788 1.07655 1.29663 1.32583 1.25927 0.94657 1.01393 0.91973 0.86358 0.80965 0.80671 0.79371 1.19132 1.20028 1.18196 1.19484 0.97694 0.90585 1.37787 0.90015 1.17135 0.89384 0.91068 0.87150 1.21250 1.00679 0.95941 1.03909 1.17775 0.84689 0.95284 0.93276 1.91334 1.52915 1.97621 1.72843 1.20125 1.03696 0.95075 1.11371 1.20290 0.94145 0.95851 0.95559 1.18408 1.00084 0.93930 1.07691 1.18670 0.93868 0.93508 0.91094 1.21312 0.92034 1.00259 0.99728 1.21006 0.98170 1.00560 0.94517 1.20914 0.97410 1.00297 0.96558 1.20911 0.92264 1.01115 0.99716 1.21210 0.89370 0.99395 0.94670 1.98374 1.36959 1.78563 1.88247 0.90484 0.85120 0.88232 0.88404 0.85824 0.86484 0.86354 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -18.90 10.91 55.55 0.61 -18.30 16 2 C 0.08 1.92 5.16 -17.32 -0.09 1.83 16 3 Si 0.90 18.05 29.59 -169.99 -5.03 13.02 16 4 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 5 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 7 C -0.43 -10.45 6.69 -37.90 -0.25 -10.70 16 8 H 0.08 2.00 7.07 -52.49 -0.37 1.63 16 9 C 0.16 3.86 5.07 -106.57 -0.54 3.32 16 10 C -0.20 -5.04 8.65 -38.87 -0.34 -5.37 16 11 C 0.11 2.65 7.28 -39.45 -0.29 2.36 16 12 F -0.17 -3.97 17.26 2.25 0.04 -3.93 16 13 C -0.28 -6.32 10.01 -39.31 -0.39 -6.71 16 14 C -0.04 -0.86 9.71 -39.32 -0.38 -1.25 16 15 C -0.20 -4.52 4.71 -104.24 -0.49 -5.01 16 16 C 0.03 0.60 4.37 -104.87 -0.46 0.14 16 17 C -0.11 -1.99 9.75 -39.17 -0.38 -2.37 16 18 C -0.12 -1.83 10.03 -39.63 -0.40 -2.23 16 19 C -0.13 -1.93 10.04 -39.47 -0.40 -2.33 16 20 C -0.12 -2.00 9.82 -39.60 -0.39 -2.38 16 21 C -0.02 -0.38 5.69 -39.07 -0.22 -0.61 16 22 Cl -0.05 -1.06 26.16 -51.86 -1.36 -2.42 16 23 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 24 H 0.13 3.46 6.15 -52.49 -0.32 3.13 16 25 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 26 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 27 H 0.12 1.99 8.06 -52.48 -0.42 1.57 16 28 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 29 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 282.08 15.07 4.25 4.25 Total: -1.00 -25.90 282.08 -8.87 -34.77 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -2.36 Total: 3.93 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -5.02 Total: -31.32 kcal Atomic # 7 Polarization: -18.90 SS G_CDS: 0.61 Total: -18.30 kcal Atomic # 9 Polarization: -3.97 SS G_CDS: 0.04 Total: -3.93 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -1.36 Total: -2.42 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -25.90 -8.87 -34.77 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222440768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.004 kcal (2) G-P(sol) polarization free energy of solvation -25.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds