Wall clock time and date at job start Mon Mar 30 2020 02:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86808 * 119.99900 * 2 1 4 4 H 1.48494 * 109.47244 * 274.83436 * 3 2 1 5 5 H 1.48505 * 109.46854 * 34.83161 * 3 2 1 6 6 H 1.48498 * 109.46928 * 154.83151 * 3 2 1 7 7 C 1.40053 * 120.00144 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99878 * 196.50654 * 7 2 1 9 9 C 1.40881 * 120.00161 * 16.51219 * 7 2 1 10 10 C 1.40718 * 120.31308 * 25.01883 * 9 7 2 11 11 C 1.37633 * 119.84147 * 179.97438 * 10 9 7 12 12 F 1.35104 * 119.74640 * 179.97438 * 11 10 9 13 13 C 1.39184 * 120.50692 * 359.97438 * 11 10 9 14 14 C 1.38015 * 120.65198 * 0.27928 * 13 11 10 15 15 C 1.39156 * 120.12735 * 359.44746 * 14 13 11 16 16 C 1.47829 * 120.24641 * 180.27461 * 15 14 13 17 17 C 1.39673 * 120.15993 * 65.00159 * 16 15 14 18 18 C 1.37899 * 119.86098 * 179.69582 * 17 16 15 19 19 C 1.38437 * 120.17934 * 0.59721 * 18 17 16 20 20 C 1.38345 * 120.31840 * 359.67854 * 19 18 17 21 21 C 1.38084 * 120.13760 * 0.02562 * 20 19 18 22 22 Cl 1.73597 * 120.09029 * 180.02562 * 21 20 19 23 23 H 0.97001 * 120.00017 * 0.02562 * 1 2 3 24 24 H 1.08001 * 120.07938 * 0.02562 * 10 9 7 25 25 H 1.08003 * 119.67671 * 180.02562 * 13 11 10 26 26 H 1.07996 * 119.93469 * 179.72907 * 14 13 11 27 27 H 1.08004 * 120.06947 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.90860 * 180.32095 * 18 17 16 29 29 H 1.07994 * 119.84188 * 179.69613 * 19 18 17 30 30 H 1.08002 * 119.92800 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2418 1.6178 0.0000 4 1 2.3871 2.1055 -1.3950 5 1 1.4939 2.6211 0.7997 6 1 3.5867 1.4129 0.5954 7 6 2.0081 -1.2129 -0.0005 8 1 3.0547 -1.2322 0.2652 9 6 1.3473 -2.4077 -0.3478 10 6 0.2070 -2.3750 -1.1716 11 6 -0.4307 -3.5482 -1.5053 12 9 -1.5257 -3.5145 -2.2960 13 6 0.0439 -4.7690 -1.0345 14 6 1.1574 -4.8245 -0.2210 15 6 1.8262 -3.6553 0.1284 16 6 3.0228 -3.7124 0.9946 17 6 4.1838 -4.3466 0.5466 18 6 5.2985 -4.3907 1.3573 19 6 5.2654 -3.8191 2.6177 20 6 4.1175 -3.1941 3.0712 21 6 2.9958 -3.1369 2.2680 22 17 1.5563 -2.3517 2.8380 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1665 -1.4317 -1.5419 25 1 -0.4667 -5.6814 -1.3050 26 1 1.5131 -5.7777 0.1413 27 1 4.2099 -4.7976 -0.4344 28 1 6.1982 -4.8764 1.0096 29 1 6.1399 -3.8612 3.2499 30 1 4.0986 -2.7506 4.0558 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001222440768.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:40 Heat of formation + Delta-G solvation = -30.050304 kcal Electronic energy + Delta-G solvation = -18460.915168 eV Core-core repulsion = 15353.002329 eV Total energy + Delta-G solvation = -3107.912839 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.54804 -40.32130 -38.65490 -36.94950 -35.58408 -33.06001 -31.71292 -31.33218 -29.38090 -27.26684 -23.99983 -23.40661 -22.84713 -21.53398 -19.45319 -18.01809 -17.74886 -16.72786 -16.63332 -16.47344 -16.22211 -15.94567 -15.22832 -14.70795 -14.51505 -14.44199 -14.31143 -13.60983 -13.40739 -13.22099 -12.85667 -12.74375 -12.37006 -12.17251 -12.12762 -12.00175 -11.82621 -11.49311 -11.29562 -11.01149 -9.73791 -9.44906 -9.43897 -8.96712 -8.63304 -6.35336 0.33357 0.48638 0.87577 0.99011 1.36704 1.47664 1.48399 1.63037 2.17296 2.64508 2.91285 3.58867 3.81947 4.07519 4.12353 4.29159 4.46351 4.55315 4.63064 4.67111 4.93376 5.04801 5.11035 5.15865 5.31022 5.44813 5.59734 5.66024 5.68282 5.80367 5.87615 6.02310 6.13373 6.29560 6.60084 6.88214 6.92718 8.26958 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.013132 B = 0.010103 C = 0.006870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.659243 B = 2770.741284 C = 4074.987450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.805 5.805 2 C 0.047 3.953 3 Si 0.961 3.039 4 H -0.262 1.262 5 H -0.270 1.270 6 H -0.256 1.256 7 C -0.439 4.439 8 H 0.076 0.924 9 C 0.135 3.865 10 C -0.226 4.226 11 C 0.092 3.908 12 F -0.170 7.170 13 C -0.283 4.283 14 C -0.044 4.044 15 C -0.192 4.192 16 C -0.006 4.006 17 C -0.121 4.121 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.126 4.126 21 C -0.040 4.040 22 Cl -0.078 7.078 23 H 0.289 0.711 24 H 0.111 0.889 25 H 0.122 0.878 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.157 0.843 29 H 0.161 0.839 30 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 -4.116 4.427 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.171 4.171 3 Si 0.783 3.217 4 H -0.187 1.187 5 H -0.194 1.194 6 H -0.179 1.179 7 C -0.467 4.467 8 H 0.094 0.906 9 C 0.132 3.868 10 C -0.247 4.247 11 C 0.073 3.927 12 F -0.149 7.149 13 C -0.302 4.302 14 C -0.063 4.063 15 C -0.194 4.194 16 C -0.007 4.007 17 C -0.139 4.139 18 C -0.131 4.131 19 C -0.136 4.136 20 C -0.144 4.144 21 C -0.067 4.067 22 Cl -0.049 7.049 23 H 0.099 0.901 24 H 0.128 0.872 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.175 0.825 29 H 0.178 0.822 30 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.019 -3.880 4.471 10.789 hybrid contribution -0.791 1.035 -0.272 1.331 sum 8.228 -2.845 4.199 9.666 Atomic orbital electron populations 1.69849 1.08945 1.30583 1.33608 1.26607 0.95176 1.04031 0.91242 0.85473 0.79732 0.77052 0.79461 1.18689 1.19432 1.17919 1.19473 0.97330 0.91199 1.38730 0.90636 1.17401 0.89504 0.92445 0.87420 1.21199 1.02178 0.95641 1.05649 1.18002 0.84932 0.95891 0.93877 1.91316 1.52961 1.97673 1.72914 1.20418 1.03871 0.95051 1.10894 1.20646 0.93619 0.96946 0.95049 1.18749 1.00614 0.93353 1.06641 1.18706 0.94220 0.96300 0.91453 1.21486 0.91941 0.99853 1.00607 1.21448 0.98406 0.99298 0.93994 1.21430 0.97678 0.97752 0.96738 1.21227 0.91874 1.01148 1.00198 1.21396 0.89562 1.00392 0.95360 1.98359 1.38815 1.79280 1.88476 0.90062 0.87155 0.85958 0.85461 0.85061 0.82520 0.82162 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.87 10.91 21.85 0.24 -40.63 16 2 C 0.05 2.27 5.16 85.29 0.44 2.71 16 3 Si 0.96 37.31 29.59 68.60 2.03 39.34 16 4 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 5 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 6 H -0.26 -9.70 7.11 99.48 0.71 -9.00 16 7 C -0.44 -21.96 6.69 23.36 0.16 -21.81 16 8 H 0.08 3.77 7.07 -2.91 -0.02 3.75 16 9 C 0.14 6.89 5.07 -21.13 -0.11 6.79 16 10 C -0.23 -12.03 8.65 22.73 0.20 -11.83 16 11 C 0.09 4.58 7.28 22.35 0.16 4.75 16 12 F -0.17 -8.21 17.26 44.97 0.78 -7.43 16 13 C -0.28 -12.54 10.01 22.44 0.22 -12.32 16 14 C -0.04 -1.88 9.71 22.44 0.22 -1.67 16 15 C -0.19 -8.71 4.71 -19.62 -0.09 -8.80 16 16 C -0.01 -0.24 4.37 -20.02 -0.09 -0.33 16 17 C -0.12 -3.85 9.75 22.54 0.22 -3.63 16 18 C -0.11 -2.81 10.03 22.24 0.22 -2.59 16 19 C -0.12 -2.84 10.04 22.34 0.22 -2.61 16 20 C -0.13 -3.78 9.82 22.26 0.22 -3.56 16 21 C -0.04 -1.54 5.69 22.60 0.13 -1.41 16 22 Cl -0.08 -3.31 26.16 -2.72 -0.07 -3.38 16 23 H 0.29 13.41 8.30 -92.71 -0.77 12.64 16 24 H 0.11 6.20 6.15 -2.91 -0.02 6.18 16 25 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 26 H 0.13 4.56 8.06 -2.91 -0.02 4.53 16 27 H 0.13 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.16 2.67 8.06 -2.91 -0.02 2.65 16 29 H 0.16 2.56 8.06 -2.91 -0.02 2.54 16 30 H 0.14 3.61 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -57.79 282.08 6.27 -51.52 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: 1.17 Total: 16.89 kcal Atomic # 6 Polarization: -58.43 SS G_CDS: 2.13 Total: -56.31 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.24 Total: -40.63 kcal Atomic # 9 Polarization: -8.21 SS G_CDS: 0.78 Total: -7.43 kcal Atomic # 14 Polarization: 37.31 SS G_CDS: 2.03 Total: 39.34 kcal Atomic # 17 Polarization: -3.31 SS G_CDS: -0.07 Total: -3.38 kcal Total: -57.79 6.27 -51.52 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222440768.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.470 kcal (2) G-P(sol) polarization free energy of solvation -57.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds