Wall clock time and date at job start Mon Mar 30 2020 02:01:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30794 * 1 3 3 Si 1.86796 * 120.00117 * 2 1 4 4 H 1.48507 * 109.47211 * 269.99753 * 3 2 1 5 5 H 1.48497 * 109.47513 * 29.99811 * 3 2 1 6 6 H 1.48497 * 109.47181 * 149.99934 * 3 2 1 7 7 C 1.40072 * 119.99727 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99630 * 159.12913 * 7 2 1 9 9 C 1.40784 * 120.00084 * 339.12456 * 7 2 1 10 10 C 1.41037 * 120.35069 * 324.23704 * 9 7 2 11 11 F 1.35102 * 120.09423 * 359.97438 * 10 9 7 12 12 C 1.37732 * 119.80434 * 179.97438 * 10 9 7 13 13 C 1.38818 * 120.52003 * 359.97438 * 12 10 9 14 14 C 1.38141 * 120.71529 * 359.75049 * 13 12 10 15 15 C 1.39064 * 120.17635 * 0.50643 * 14 13 12 16 16 C 1.47868 * 120.26128 * 179.77120 * 15 14 13 17 17 C 1.39646 * 120.15731 * 64.72019 * 16 15 14 18 18 C 1.37893 * 119.86713 * 180.02562 * 17 16 15 19 19 C 1.38443 * 120.17710 * 0.02562 * 18 17 16 20 20 C 1.38329 * 120.31301 * 359.95897 * 19 18 17 21 21 C 1.38092 * 120.13527 * 0.27508 * 20 19 18 22 22 Cl 1.73600 * 120.08809 * 179.71904 * 21 20 19 23 23 H 0.96998 * 120.00044 * 0.02562 * 1 2 3 24 24 H 1.07994 * 119.73812 * 179.97438 * 12 10 9 25 25 H 1.07996 * 119.63783 * 179.97438 * 13 12 10 26 26 H 1.07995 * 119.90705 * 180.25641 * 14 13 12 27 27 H 1.08004 * 120.06492 * 359.97438 * 17 16 15 28 28 H 1.08002 * 119.91797 * 180.02562 * 18 17 16 29 29 H 1.07995 * 119.84289 * 179.97438 * 19 18 17 30 30 H 1.07999 * 119.93092 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3079 0.0000 0.0000 3 14 2.2420 1.6177 0.0000 4 1 2.4895 2.0464 -1.4001 5 1 1.4395 2.6527 0.7000 6 1 3.5395 1.4401 0.7000 7 6 2.0082 -1.2131 0.0005 8 1 3.0351 -1.2439 -0.3327 9 6 1.3736 -2.3921 0.4355 10 6 0.4447 -2.3518 1.4960 11 9 0.1587 -1.1786 2.1018 12 6 -0.1700 -3.5119 1.9121 13 6 0.1169 -4.7221 1.2955 14 6 1.0190 -4.7854 0.2511 15 6 1.6606 -3.6329 -0.1892 16 6 2.6303 -3.6994 -1.3036 17 6 2.2047 -4.0621 -2.5832 18 6 3.1141 -4.1226 -3.6179 19 6 4.4471 -3.8255 -3.3911 20 6 4.8767 -3.4650 -2.1266 21 6 3.9779 -3.4049 -1.0799 22 17 4.5197 -2.9595 0.5081 23 1 -0.4850 0.8400 -0.0004 24 1 -0.8809 -3.4799 2.7245 25 1 -0.3731 -5.6232 1.6335 26 1 1.2294 -5.7332 -0.2219 27 1 1.1654 -4.2955 -2.7618 28 1 2.7858 -4.4027 -4.6079 29 1 5.1549 -3.8750 -4.2053 30 1 5.9181 -3.2349 -1.9565 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001222445344.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:43 Heat of formation + Delta-G solvation = -9.702033 kcal Electronic energy + Delta-G solvation = -18704.341215 eV Core-core repulsion = 15597.310743 eV Total energy + Delta-G solvation = -3107.030472 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -46.97164 -38.89323 -36.92582 -35.65321 -33.67680 -31.71398 -30.27549 -29.53766 -27.98617 -25.28486 -22.64737 -22.02740 -20.89747 -20.00426 -17.51002 -16.70292 -15.73203 -15.40703 -14.75560 -14.51827 -14.45592 -14.21669 -13.68606 -13.30742 -12.97314 -12.85550 -12.65470 -11.84643 -11.55980 -11.36537 -11.30442 -11.16213 -11.04085 -10.68117 -10.61969 -10.53749 -10.12625 -9.94327 -9.46149 -9.04498 -8.42604 -8.12341 -7.38811 -7.20282 -6.85733 -4.43614 1.69182 1.77719 2.62811 2.76024 2.90854 3.08812 3.11416 3.18265 3.95006 4.18781 4.55227 5.24841 5.28342 5.37849 5.50776 5.76548 5.92245 6.01772 6.05190 6.16745 6.32173 6.50604 6.55517 6.72327 6.84731 6.98985 7.03511 7.13453 7.28442 7.45782 7.57286 7.75682 7.81328 8.11560 8.40925 8.71836 8.82972 10.13106 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.009803 C = 0.007514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.778675 B = 2855.671417 C = 3725.724823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.770 5.770 2 C 0.081 3.919 3 Si 0.900 3.100 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.257 1.257 7 C -0.454 4.454 8 H 0.094 0.906 9 C 0.118 3.882 10 C 0.039 3.961 11 F -0.143 7.143 12 C -0.130 4.130 13 C -0.220 4.220 14 C -0.076 4.076 15 C -0.166 4.166 16 C 0.036 3.964 17 C -0.108 4.108 18 C -0.120 4.120 19 C -0.134 4.134 20 C -0.117 4.117 21 C -0.029 4.029 22 Cl -0.063 7.063 23 H 0.284 0.716 24 H 0.100 0.900 25 H 0.098 0.902 26 H 0.095 0.905 27 H 0.126 0.874 28 H 0.119 0.881 29 H 0.120 0.880 30 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.180 -4.698 -3.914 8.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.181 1.181 7 C -0.481 4.481 8 H 0.112 0.888 9 C 0.114 3.886 10 C 0.019 3.981 11 F -0.122 7.122 12 C -0.150 4.150 13 C -0.240 4.240 14 C -0.094 4.094 15 C -0.167 4.167 16 C 0.035 3.965 17 C -0.126 4.126 18 C -0.139 4.139 19 C -0.152 4.152 20 C -0.136 4.136 21 C -0.055 4.055 22 Cl -0.034 7.034 23 H 0.095 0.905 24 H 0.118 0.882 25 H 0.116 0.884 26 H 0.113 0.887 27 H 0.143 0.857 28 H 0.137 0.863 29 H 0.138 0.862 30 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.000 -4.442 -3.754 7.670 hybrid contribution 0.169 1.118 0.213 1.151 sum 5.169 -3.324 -3.541 7.093 Atomic orbital electron populations 1.69755 1.07859 1.29999 1.31661 1.25862 0.94542 1.01312 0.92363 0.86408 0.81079 0.80857 0.79232 1.19444 1.19979 1.18115 1.19561 0.99868 0.90980 1.37717 0.88835 1.17318 0.90015 0.92295 0.88968 1.17719 1.03622 0.80241 0.96563 1.91331 1.92483 1.46731 1.81665 1.20635 1.00673 0.92650 1.01029 1.20007 1.05619 0.95944 1.02389 1.20518 0.96370 0.95824 0.96724 1.18249 1.04654 0.94034 0.99783 1.18606 0.90586 0.93701 0.93561 1.21269 0.99628 1.00262 0.91437 1.21036 0.93378 1.00700 0.98746 1.20913 0.96006 1.02201 0.96068 1.20872 0.99012 1.01606 0.92104 1.21150 0.93833 1.03670 0.86889 1.98347 1.89622 1.90863 1.24593 0.90522 0.88219 0.88358 0.88657 0.85652 0.86333 0.86223 0.85896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -20.32 11.11 55.55 0.62 -19.70 16 2 C 0.08 2.06 4.48 -17.31 -0.08 1.98 16 3 Si 0.90 19.40 29.61 -169.99 -5.03 14.36 16 4 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 5 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 6 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 7 C -0.45 -11.77 7.57 -37.93 -0.29 -12.06 16 8 H 0.09 2.37 5.11 -52.48 -0.27 2.10 16 9 C 0.12 3.02 4.91 -106.49 -0.52 2.50 16 10 C 0.04 1.01 6.69 -38.71 -0.26 0.75 16 11 F -0.14 -3.88 14.22 2.25 0.03 -3.85 16 12 C -0.13 -3.01 9.99 -39.55 -0.40 -3.41 16 13 C -0.22 -4.68 10.03 -39.40 -0.40 -5.07 16 14 C -0.08 -1.62 9.71 -39.31 -0.38 -2.00 16 15 C -0.17 -3.82 4.70 -104.27 -0.49 -4.31 16 16 C 0.04 0.75 4.69 -104.87 -0.49 0.26 16 17 C -0.11 -1.94 9.74 -39.18 -0.38 -2.33 16 18 C -0.12 -1.82 10.03 -39.63 -0.40 -2.22 16 19 C -0.13 -1.95 10.04 -39.47 -0.40 -2.34 16 20 C -0.12 -1.91 9.82 -39.60 -0.39 -2.30 16 21 C -0.03 -0.56 5.33 -39.07 -0.21 -0.77 16 22 Cl -0.06 -1.26 25.49 -51.86 -1.32 -2.58 16 23 H 0.28 6.90 8.30 -40.82 -0.34 6.56 16 24 H 0.10 2.08 8.06 -52.49 -0.42 1.66 16 25 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 26 H 0.10 1.79 8.06 -52.49 -0.42 1.36 16 27 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 28 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 29 H 0.12 1.36 8.06 -52.49 -0.42 0.93 16 30 H 0.12 1.72 8.06 -52.49 -0.42 1.30 16 LS Contribution 279.29 15.07 4.21 4.21 Total: -1.00 -27.71 279.29 -8.93 -36.64 By element: Atomic # 1 Polarization: 4.60 SS G_CDS: -2.36 Total: 2.24 kcal Atomic # 6 Polarization: -26.25 SS G_CDS: -5.07 Total: -31.32 kcal Atomic # 7 Polarization: -20.32 SS G_CDS: 0.62 Total: -19.70 kcal Atomic # 9 Polarization: -3.88 SS G_CDS: 0.03 Total: -3.85 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.36 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -1.32 Total: -2.58 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -27.71 -8.93 -36.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001222445344.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.941 kcal (2) G-P(sol) polarization free energy of solvation -27.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds