Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47518 * 264.80854 * 3 2 1 5 5 H 1.48507 * 109.46723 * 24.80657 * 3 2 1 6 6 H 1.48500 * 109.47434 * 144.80276 * 3 2 1 7 7 C 1.37877 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99884 * 4.83202 * 7 2 1 9 9 C 1.50707 * 119.99882 * 184.83539 * 7 2 1 10 10 H 1.09002 * 109.46998 * 334.98480 * 9 7 2 11 11 C 1.52994 * 109.47124 * 94.99108 * 9 7 2 12 12 Cl 1.80297 * 109.47069 * 185.71096 * 11 9 7 13 13 O 1.42901 * 109.46504 * 214.98896 * 9 7 2 14 14 C 1.35698 * 116.99655 * 150.00161 * 13 9 7 15 15 C 1.39261 * 120.13812 * 179.72223 * 14 13 9 16 16 C 1.38640 * 117.91858 * 179.73433 * 15 14 13 17 17 C 1.38759 * 118.02098 * 0.53433 * 16 15 14 18 18 C 1.50698 * 120.01443 * 179.75180 * 17 16 15 19 19 Cl 1.80297 * 109.47818 * 89.97131 * 18 17 16 20 20 N 1.31811 * 119.97163 * 359.71576 * 17 16 15 21 21 N 1.28347 * 122.26383 * 0.02562 * 20 17 16 22 22 H 0.97004 * 120.00082 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47296 * 305.70828 * 11 9 7 24 24 H 1.09001 * 109.47511 * 65.71226 * 11 9 7 25 25 H 1.08006 * 121.04366 * 359.97438 * 15 14 13 26 26 H 1.08006 * 120.99084 * 180.22611 * 16 15 14 27 27 H 1.09005 * 109.46869 * 209.97179 * 18 17 16 28 28 H 1.09003 * 109.47201 * 329.96618 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6064 1.9832 -1.3943 5 1 1.3959 2.6819 0.5874 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0797 9 6 3.5076 -1.1963 0.1095 10 1 3.9002 -0.2479 -0.2573 11 6 3.9115 -1.3837 1.5732 12 17 5.7002 -1.2190 1.7288 13 8 4.0407 -2.2670 -0.6726 14 6 5.2756 -2.0854 -1.2048 15 6 5.8602 -3.0889 -1.9733 16 6 7.1210 -2.8525 -2.4993 17 6 7.7269 -1.6362 -2.2185 18 6 9.0994 -1.3343 -2.7627 19 17 8.9460 -0.5433 -4.3756 20 7 7.1012 -0.7447 -1.4762 21 7 5.9319 -0.9563 -0.9910 22 1 -0.4850 0.8401 -0.0004 23 1 3.4223 -0.6257 2.1850 24 1 3.6072 -2.3746 1.9102 25 1 5.3459 -4.0207 -2.1572 26 1 7.6189 -3.5950 -3.1054 27 1 9.6225 -0.6661 -2.0786 28 1 9.6619 -2.2624 -2.8651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001223601851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -3.946652 kcal Electronic energy + Delta-G solvation = -16964.656476 eV Core-core repulsion = 13875.362688 eV Total energy + Delta-G solvation = -3089.293788 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.88292 -38.14161 -36.15001 -35.12129 -33.46135 -33.30380 -32.16548 -30.27770 -27.45046 -25.39744 -24.54786 -22.72697 -21.15679 -18.11373 -17.61929 -16.74644 -15.90936 -15.74851 -14.93386 -14.48716 -14.23409 -13.90320 -13.54343 -13.35991 -13.04836 -12.95595 -12.78002 -12.12162 -11.55831 -11.44230 -11.07128 -10.88563 -10.60305 -10.57006 -10.10207 -10.03502 -9.88840 -9.70946 -9.53885 -9.12060 -8.92435 -8.34284 -6.49270 -4.59055 1.02669 1.04214 2.32094 3.01157 3.16757 3.21642 3.29672 3.51056 3.89269 4.08517 4.10972 4.46395 4.65607 4.85593 5.00482 5.06624 5.09214 5.33803 5.68629 5.81806 5.87681 5.98554 6.17698 6.30402 6.62883 7.10607 7.64431 8.17267 8.59730 8.99715 9.07615 10.60249 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.005866 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.394180 B = 4772.203162 C = 5127.953882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.090 3.910 3 Si 0.863 3.137 4 H -0.266 1.266 5 H -0.278 1.278 6 H -0.251 1.251 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.177 3.823 10 H 0.068 0.932 11 C -0.036 4.036 12 Cl -0.219 7.219 13 O -0.284 6.284 14 C 0.287 3.713 15 C -0.146 4.146 16 C -0.075 4.075 17 C -0.014 4.014 18 C 0.036 3.964 19 Cl -0.173 7.173 20 N -0.183 5.183 21 N -0.274 5.274 22 H 0.275 0.725 23 H 0.099 0.901 24 H 0.089 0.911 25 H 0.154 0.846 26 H 0.149 0.851 27 H 0.111 0.889 28 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.148 -4.856 -3.595 16.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.118 4.118 3 Si 0.688 3.312 4 H -0.191 1.191 5 H -0.204 1.204 6 H -0.175 1.175 7 C -0.565 4.565 8 H 0.108 0.892 9 C 0.122 3.878 10 H 0.086 0.914 11 C -0.099 4.099 12 Cl -0.194 7.194 13 O -0.187 6.187 14 C 0.103 3.897 15 C -0.176 4.176 16 C -0.103 4.103 17 C -0.161 4.161 18 C -0.028 4.028 19 Cl -0.146 7.146 20 N -0.030 5.030 21 N -0.133 5.133 22 H 0.085 0.915 23 H 0.118 0.882 24 H 0.108 0.892 25 H 0.172 0.828 26 H 0.167 0.833 27 H 0.129 0.871 28 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 14.784 -3.438 -2.954 15.464 hybrid contribution 0.273 -0.422 -0.599 0.782 sum 15.058 -3.860 -3.553 15.945 Atomic orbital electron populations 1.69834 1.06264 1.28234 1.45920 1.24939 0.94906 0.99059 0.92846 0.87018 0.80789 0.83046 0.80391 1.19065 1.20389 1.17514 1.20658 0.86289 0.96036 1.53556 0.89230 1.20921 0.94717 0.87060 0.85061 0.91381 1.25793 0.77548 1.04656 1.01917 1.98677 1.23512 1.98745 1.98418 1.86527 1.23892 1.45529 1.62723 1.21798 0.87888 0.91041 0.88987 1.21553 0.95847 1.00735 0.99502 1.21949 0.94168 0.97120 0.97070 1.22222 0.98728 0.93697 1.01464 1.22786 0.93228 1.01177 0.85657 1.98739 1.98636 1.83842 1.33418 1.72703 1.01352 1.25411 1.03520 1.73343 1.02505 1.18521 1.18908 0.91484 0.88218 0.89223 0.82822 0.83304 0.87068 0.87309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.50 13.96 55.43 0.77 -23.73 15 2 C 0.09 2.42 5.47 -17.82 -0.10 2.32 15 3 Si 0.86 20.38 26.99 -169.99 -4.59 15.79 15 4 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 15 6 H -0.25 -5.79 6.82 56.52 0.39 -5.40 15 7 C -0.53 -14.02 9.23 -34.44 -0.32 -14.33 15 8 H 0.09 2.56 8.06 -52.49 -0.42 2.14 15 9 C 0.18 4.14 1.91 -27.88 -0.05 4.08 15 10 H 0.07 1.67 4.16 -51.93 -0.22 1.45 15 11 C -0.04 -0.75 6.31 37.15 0.23 -0.51 15 12 Cl -0.22 -4.33 25.95 -51.86 -1.35 -5.67 15 13 O -0.28 -6.23 9.75 -18.80 -0.18 -6.42 15 14 C 0.29 5.58 6.74 -16.95 -0.11 5.46 15 15 C -0.15 -2.17 10.16 -39.05 -0.40 -2.57 15 16 C -0.08 -0.92 9.87 -39.24 -0.39 -1.30 15 17 C -0.01 -0.20 6.24 -82.41 -0.51 -0.71 15 18 C 0.04 0.36 6.96 36.00 0.25 0.61 15 19 Cl -0.17 -2.02 29.13 -51.86 -1.51 -3.53 15 20 N -0.18 -3.30 11.42 33.60 0.38 -2.92 15 21 N -0.27 -5.59 7.56 30.50 0.23 -5.36 15 22 H 0.27 7.22 8.31 -40.82 -0.34 6.88 15 23 H 0.10 2.02 8.14 -51.93 -0.42 1.60 15 24 H 0.09 1.73 8.14 -51.93 -0.42 1.31 15 25 H 0.15 1.87 8.06 -52.48 -0.42 1.45 15 26 H 0.15 1.18 8.06 -52.48 -0.42 0.76 15 27 H 0.11 1.03 8.14 -51.93 -0.42 0.61 15 28 H 0.11 0.70 8.09 -51.93 -0.42 0.28 15 LS Contribution 277.84 15.07 4.19 4.19 Total: -1.00 -29.69 277.84 -5.77 -35.47 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -2.32 Total: -0.87 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -1.40 Total: -6.96 kcal Atomic # 7 Polarization: -33.39 SS G_CDS: 1.39 Total: -32.00 kcal Atomic # 8 Polarization: -6.23 SS G_CDS: -0.18 Total: -6.42 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -4.59 Total: 15.79 kcal Atomic # 17 Polarization: -6.35 SS G_CDS: -2.86 Total: -9.20 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.69 -5.77 -35.47 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223601851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.519 kcal (2) G-P(sol) polarization free energy of solvation -29.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds