Wall clock time and date at job start Mon Mar 30 2020 01:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 120.00047 * 2 1 4 4 H 1.48496 * 109.47518 * 264.80854 * 3 2 1 5 5 H 1.48507 * 109.46723 * 24.80657 * 3 2 1 6 6 H 1.48500 * 109.47434 * 144.80276 * 3 2 1 7 7 C 1.37877 * 120.00177 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99884 * 4.83202 * 7 2 1 9 9 C 1.50707 * 119.99882 * 184.83539 * 7 2 1 10 10 H 1.09002 * 109.46998 * 334.98480 * 9 7 2 11 11 C 1.52994 * 109.47124 * 94.99108 * 9 7 2 12 12 Cl 1.80297 * 109.47069 * 185.71096 * 11 9 7 13 13 O 1.42901 * 109.46504 * 214.98896 * 9 7 2 14 14 C 1.35698 * 116.99655 * 150.00161 * 13 9 7 15 15 C 1.39261 * 120.13812 * 179.72223 * 14 13 9 16 16 C 1.38640 * 117.91858 * 179.73433 * 15 14 13 17 17 C 1.38759 * 118.02098 * 0.53433 * 16 15 14 18 18 C 1.50698 * 120.01443 * 179.75180 * 17 16 15 19 19 Cl 1.80297 * 109.47818 * 89.97131 * 18 17 16 20 20 N 1.31811 * 119.97163 * 359.71576 * 17 16 15 21 21 N 1.28347 * 122.26383 * 0.02562 * 20 17 16 22 22 H 0.97004 * 120.00082 * 0.02562 * 1 2 3 23 23 H 1.09001 * 109.47296 * 305.70828 * 11 9 7 24 24 H 1.09001 * 109.47511 * 65.71226 * 11 9 7 25 25 H 1.08006 * 121.04366 * 359.97438 * 15 14 13 26 26 H 1.08006 * 120.99084 * 180.22611 * 16 15 14 27 27 H 1.09005 * 109.46869 * 209.97179 * 18 17 16 28 28 H 1.09003 * 109.47201 * 329.96618 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6064 1.9832 -1.3943 5 1 1.3959 2.6819 0.5874 6 1 3.4875 1.4744 0.8070 7 6 2.0045 -1.1940 -0.0005 8 1 1.4674 -2.1276 -0.0797 9 6 3.5076 -1.1963 0.1095 10 1 3.9002 -0.2479 -0.2573 11 6 3.9115 -1.3837 1.5732 12 17 5.7002 -1.2190 1.7288 13 8 4.0407 -2.2670 -0.6726 14 6 5.2756 -2.0854 -1.2048 15 6 5.8602 -3.0889 -1.9733 16 6 7.1210 -2.8525 -2.4993 17 6 7.7269 -1.6362 -2.2185 18 6 9.0994 -1.3343 -2.7627 19 17 8.9460 -0.5433 -4.3756 20 7 7.1012 -0.7447 -1.4762 21 7 5.9319 -0.9563 -0.9910 22 1 -0.4850 0.8401 -0.0004 23 1 3.4223 -0.6257 2.1850 24 1 3.6072 -2.3746 1.9102 25 1 5.3459 -4.0207 -2.1572 26 1 7.6189 -3.5950 -3.1054 27 1 9.6225 -0.6661 -2.0786 28 1 9.6619 -2.2624 -2.8651 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001223601851.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:50 Heat of formation + Delta-G solvation = -24.239863 kcal Electronic energy + Delta-G solvation = -16965.536456 eV Core-core repulsion = 13875.362688 eV Total energy + Delta-G solvation = -3090.173767 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.15496 -39.66925 -37.04946 -36.72399 -35.35009 -34.44425 -33.56368 -31.96283 -28.51817 -27.29513 -25.83282 -23.87641 -22.82937 -19.80343 -19.21294 -18.27159 -17.22227 -16.93510 -16.61808 -15.75547 -15.50530 -15.19159 -14.79110 -14.73935 -14.72961 -14.32175 -14.06029 -13.72603 -13.35803 -12.97862 -12.66125 -12.59851 -11.95385 -11.68648 -11.52488 -11.42001 -11.34257 -11.25990 -11.08821 -10.95957 -10.42393 -9.79521 -8.55750 -6.69215 -0.13375 -0.08864 1.22199 1.30153 1.40120 1.42004 1.42494 2.07237 2.14734 2.67862 2.83800 3.02505 3.36331 3.61048 3.93366 4.02280 4.11383 4.19677 4.29582 4.37663 4.52004 4.65607 4.86723 4.97897 5.11010 5.25960 5.81850 6.37070 6.47991 7.00350 7.74724 8.58303 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.021778 B = 0.005866 C = 0.005459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.394180 B = 4772.203162 C = 5127.953882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.049 3.951 3 Si 0.918 3.082 4 H -0.272 1.272 5 H -0.266 1.266 6 H -0.243 1.243 7 C -0.536 4.536 8 H 0.055 0.945 9 C 0.187 3.813 10 H 0.056 0.944 11 C -0.033 4.033 12 Cl -0.204 7.204 13 O -0.304 6.304 14 C 0.253 3.747 15 C -0.145 4.145 16 C -0.055 4.055 17 C -0.004 4.004 18 C 0.039 3.961 19 Cl -0.185 7.185 20 N -0.221 5.221 21 N -0.312 5.312 22 H 0.279 0.721 23 H 0.101 0.899 24 H 0.099 0.901 25 H 0.179 0.821 26 H 0.205 0.795 27 H 0.117 0.883 28 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.105 -5.588 -4.410 19.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.155 4.155 3 Si 0.740 3.260 4 H -0.197 1.197 5 H -0.191 1.191 6 H -0.167 1.167 7 C -0.573 4.573 8 H 0.073 0.927 9 C 0.131 3.869 10 H 0.074 0.926 11 C -0.096 4.096 12 Cl -0.178 7.178 13 O -0.208 6.208 14 C 0.068 3.932 15 C -0.174 4.174 16 C -0.082 4.082 17 C -0.152 4.152 18 C -0.025 4.025 19 Cl -0.159 7.159 20 N -0.066 5.066 21 N -0.168 5.168 22 H 0.089 0.911 23 H 0.119 0.881 24 H 0.118 0.882 25 H 0.196 0.804 26 H 0.222 0.778 27 H 0.136 0.864 28 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 17.770 -4.154 -3.759 18.633 hybrid contribution -0.429 -0.335 -0.465 0.716 sum 17.341 -4.489 -4.224 18.404 Atomic orbital electron populations 1.69926 1.07661 1.29264 1.47891 1.25575 0.95441 1.01921 0.92554 0.86165 0.80042 0.79724 0.80064 1.19708 1.19073 1.16682 1.20772 0.88393 0.94741 1.53405 0.92715 1.20565 0.92614 0.87197 0.86505 0.92607 1.25483 0.78511 1.05319 1.00253 1.98672 1.22013 1.98744 1.98344 1.86409 1.26009 1.44655 1.63699 1.22120 0.87336 0.92758 0.90988 1.21946 0.96783 1.00552 0.98167 1.22550 0.92737 0.97318 0.95637 1.22933 0.99699 0.93441 0.99154 1.23107 0.91220 1.03476 0.84709 1.98748 1.98619 1.84311 1.34239 1.72620 1.01071 1.27265 1.05615 1.73199 1.03747 1.19420 1.20475 0.91088 0.88077 0.88246 0.80373 0.77838 0.86444 0.82658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.96 13.96 21.45 0.30 -52.66 15 2 C 0.05 2.67 5.47 84.65 0.46 3.14 15 3 Si 0.92 42.71 26.99 68.60 1.85 44.56 15 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 15 5 H -0.27 -11.72 7.11 99.48 0.71 -11.01 15 6 H -0.24 -10.91 6.82 99.48 0.68 -10.23 15 7 C -0.54 -29.44 9.23 25.60 0.24 -29.20 15 8 H 0.05 3.31 8.06 -2.91 -0.02 3.28 15 9 C 0.19 8.86 1.91 29.85 0.06 8.91 15 10 H 0.06 2.77 4.16 -2.39 -0.01 2.76 15 11 C -0.03 -1.35 6.31 71.98 0.45 -0.89 15 12 Cl -0.20 -7.86 25.95 -2.72 -0.07 -7.93 15 13 O -0.30 -13.49 9.75 -90.17 -0.88 -14.37 15 14 C 0.25 9.63 6.74 84.86 0.57 10.21 15 15 C -0.15 -3.92 10.16 22.61 0.23 -3.69 15 16 C -0.05 -1.09 9.87 22.49 0.22 -0.87 15 17 C 0.00 -0.10 6.24 42.69 0.27 0.17 15 18 C 0.04 0.60 6.96 71.24 0.50 1.10 15 19 Cl -0.19 -3.77 29.13 -2.72 -0.08 -3.85 15 20 N -0.22 -7.60 11.42 -47.60 -0.54 -8.14 15 21 N -0.31 -12.51 7.56 -170.22 -1.29 -13.80 15 22 H 0.28 15.03 8.31 -92.71 -0.77 14.26 15 23 H 0.10 4.10 8.14 -2.39 -0.02 4.08 15 24 H 0.10 3.86 8.14 -2.39 -0.02 3.84 15 25 H 0.18 3.79 8.06 -2.91 -0.02 3.77 15 26 H 0.20 1.80 8.06 -2.91 -0.02 1.77 15 27 H 0.12 1.75 8.14 -2.38 -0.02 1.73 15 28 H 0.16 1.04 8.09 -2.39 -0.02 1.02 15 Total: -1.00 -67.60 277.84 3.45 -64.14 By element: Atomic # 1 Polarization: 2.01 SS G_CDS: 1.16 Total: 3.17 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: 3.00 Total: -11.12 kcal Atomic # 7 Polarization: -73.07 SS G_CDS: -1.53 Total: -74.60 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.88 Total: -14.37 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 1.85 Total: 44.56 kcal Atomic # 17 Polarization: -11.63 SS G_CDS: -0.15 Total: -11.78 kcal Total: -67.60 3.45 -64.14 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001223601851.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.903 kcal (2) G-P(sol) polarization free energy of solvation -67.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds