Wall clock time and date at job start Mon Mar 30 2020 02:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99989 * 2 1 4 4 H 1.48505 * 109.46770 * 239.99887 * 3 2 1 5 5 H 1.48495 * 109.47368 * 0.02562 * 3 2 1 6 6 H 1.48498 * 109.46938 * 120.00347 * 3 2 1 7 7 C 1.37877 * 119.99699 * 180.02562 * 2 1 3 8 8 H 1.07992 * 119.99963 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99794 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.46938 * 299.99521 * 9 7 2 11 11 C 1.52993 * 109.47559 * 60.00098 * 9 7 2 12 12 Cl 1.80296 * 109.47470 * 184.99771 * 11 9 7 13 13 O 1.42903 * 109.46708 * 180.02562 * 9 7 2 14 14 C 1.35899 * 117.00354 * 146.94178 * 13 9 7 15 15 C 1.38759 * 120.05165 * 356.50614 * 14 13 9 16 16 C 1.38128 * 119.94110 * 180.02562 * 15 14 13 17 17 C 1.38282 * 120.05479 * 0.02562 * 16 15 14 18 18 C 1.38243 * 120.11400 * 359.95383 * 17 16 15 19 19 C 1.50701 * 119.96972 * 179.97438 * 18 17 16 20 20 F 1.39901 * 109.47012 * 120.00170 * 19 18 17 21 21 F 1.39903 * 109.47400 * 240.00042 * 19 18 17 22 22 C 1.38156 * 120.05727 * 0.27541 * 18 17 16 23 23 H 0.97000 * 120.00030 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.47305 * 305.00187 * 11 9 7 25 25 H 1.09008 * 109.47173 * 64.99486 * 11 9 7 26 26 H 1.07994 * 120.03172 * 0.02562 * 15 14 13 27 27 H 1.08000 * 119.96857 * 179.97438 * 16 15 14 28 28 H 1.08006 * 119.94043 * 179.97438 * 17 16 15 29 29 H 1.09004 * 109.47585 * 0.02562 * 19 18 17 30 30 H 1.08004 * 120.03306 * 179.73657 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6246 -2.5570 0.8897 11 6 0.3708 -2.5799 -1.2494 12 17 -0.6397 -4.0713 -1.1771 13 8 2.1795 -3.5853 -0.0005 14 6 1.8091 -4.7138 0.6600 15 6 0.6092 -4.7494 1.3560 16 6 0.2352 -5.8974 2.0269 17 6 1.0557 -7.0103 2.0059 18 6 2.2514 -6.9774 1.3128 19 6 3.1434 -8.1920 1.2925 20 9 3.3197 -8.6190 -0.0280 21 9 4.3860 -7.8674 1.8474 22 6 2.6323 -5.8301 0.6440 23 1 -0.4850 0.8400 0.0004 24 1 -0.2766 -1.7042 -1.2949 25 1 1.0022 -2.6115 -2.1374 26 1 -0.0317 -3.8804 1.3731 27 1 -0.6984 -5.9255 2.5691 28 1 0.7617 -7.9068 2.5315 29 1 2.6830 -8.9908 1.8739 30 1 3.5686 -5.8035 0.1062 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225539819.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:14 Heat of formation + Delta-G solvation = -144.181337 kcal Electronic energy + Delta-G solvation = -19011.087739 eV Core-core repulsion = 15467.456583 eV Total energy + Delta-G solvation = -3543.631157 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 276.047 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.90902 -47.91534 -41.04876 -38.61528 -36.61942 -35.39391 -32.76497 -31.99026 -30.38286 -27.33841 -27.06522 -24.09428 -23.45508 -21.72485 -19.41315 -18.78746 -18.20393 -18.13397 -17.32422 -17.08354 -16.57736 -16.24104 -15.98162 -15.00809 -14.94273 -14.85807 -14.54093 -14.30596 -14.02011 -13.94181 -13.61167 -13.28281 -13.07015 -12.89486 -12.76733 -12.46653 -12.30886 -12.13478 -11.76177 -11.46736 -11.21879 -11.01136 -10.59783 -9.96823 -8.99877 -8.40185 -6.56110 0.17631 0.52212 1.38895 1.42334 1.51415 1.57403 2.23984 2.57990 2.73544 2.90177 2.95861 3.32052 3.78943 3.93953 4.13865 4.14139 4.29657 4.33345 4.35283 4.45823 4.65508 4.84813 4.98095 5.16543 5.33482 5.46377 5.47981 5.54280 5.81836 5.83188 6.44063 6.78678 7.16641 8.66308 Molecular weight = 276.05amu Principal moments of inertia in cm(-1) A = 0.023786 B = 0.005267 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1176.859134 B = 5314.485254 C = 5882.778153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.030 3.970 3 Si 0.977 3.023 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.271 1.271 7 C -0.553 4.553 8 H 0.064 0.936 9 C 0.212 3.788 10 H 0.036 0.964 11 C -0.027 4.027 12 Cl -0.220 7.220 13 O -0.333 6.333 14 C 0.120 3.880 15 C -0.186 4.186 16 C -0.086 4.086 17 C -0.121 4.121 18 C -0.145 4.145 19 C 0.316 3.684 20 F -0.214 7.214 21 F -0.214 7.214 22 C -0.148 4.148 23 H 0.277 0.723 24 H 0.120 0.880 25 H 0.072 0.928 26 H 0.122 0.878 27 H 0.156 0.844 28 H 0.175 0.825 29 H 0.174 0.826 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.100 -12.648 4.091 13.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.172 4.172 3 Si 0.800 3.200 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.196 1.196 7 C -0.590 4.590 8 H 0.082 0.918 9 C 0.157 3.843 10 H 0.054 0.946 11 C -0.090 4.090 12 Cl -0.194 7.194 13 O -0.247 6.247 14 C 0.074 3.926 15 C -0.205 4.205 16 C -0.104 4.104 17 C -0.139 4.139 18 C -0.145 4.145 19 C 0.263 3.737 20 F -0.195 7.195 21 F -0.195 7.195 22 C -0.167 4.167 23 H 0.087 0.913 24 H 0.137 0.863 25 H 0.091 0.909 26 H 0.139 0.861 27 H 0.173 0.827 28 H 0.192 0.808 29 H 0.191 0.809 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -0.128 -12.581 3.955 13.189 hybrid contribution 0.276 1.307 -0.405 1.396 sum 0.148 -11.274 3.550 11.820 Atomic orbital electron populations 1.69860 1.06968 1.29164 1.48422 1.25694 0.95974 1.02513 0.93031 0.85310 0.78273 0.77270 0.79147 1.19326 1.19780 1.19596 1.21211 0.94097 0.89493 1.54221 0.91812 1.20304 0.87355 0.82921 0.93764 0.94635 1.25418 0.95189 0.87056 1.01291 1.98631 1.75075 1.46682 1.98984 1.86081 1.46694 1.22305 1.69623 1.19309 0.93801 0.87262 0.92208 1.21644 0.96894 1.01146 1.00793 1.21244 1.00351 0.91486 0.97311 1.21161 0.92542 1.00259 0.99933 1.20332 0.98050 0.94571 1.01596 1.20899 0.79644 0.95126 0.78056 1.92984 1.95857 1.90859 1.39837 1.92985 1.46782 1.94470 1.85254 1.20226 1.00517 0.91899 1.04085 0.91332 0.86254 0.90923 0.86056 0.82685 0.80765 0.80919 0.86528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.98 11.29 21.45 0.24 -46.74 16 2 C 0.03 1.50 5.29 84.65 0.45 1.95 16 3 Si 0.98 40.51 29.54 68.60 2.03 42.54 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 7 C -0.55 -29.51 8.89 25.60 0.23 -29.29 16 8 H 0.06 3.46 7.81 -2.91 -0.02 3.44 16 9 C 0.21 10.56 2.19 29.85 0.07 10.62 16 10 H 0.04 1.87 5.39 -2.39 -0.01 1.86 16 11 C -0.03 -1.24 6.17 71.98 0.44 -0.79 16 12 Cl -0.22 -8.96 25.62 -2.72 -0.07 -9.03 16 13 O -0.33 -16.12 9.73 -92.42 -0.90 -17.02 16 14 C 0.12 4.99 5.97 22.51 0.13 5.12 16 15 C -0.19 -6.94 7.05 22.37 0.16 -6.78 16 16 C -0.09 -2.39 10.04 22.25 0.22 -2.17 16 17 C -0.12 -2.80 9.67 22.28 0.22 -2.58 16 18 C -0.14 -4.03 5.37 -19.88 -0.11 -4.13 16 19 C 0.32 6.91 5.45 71.24 0.39 7.30 16 20 F -0.21 -5.67 17.26 44.97 0.78 -4.89 16 21 F -0.21 -5.61 17.25 44.97 0.78 -4.84 16 22 C -0.15 -5.42 9.54 22.36 0.21 -5.20 16 23 H 0.28 13.49 8.31 -92.71 -0.77 12.72 16 24 H 0.12 5.90 5.95 -2.39 -0.01 5.89 16 25 H 0.07 3.34 8.14 -2.38 -0.02 3.32 16 26 H 0.12 4.99 5.12 -2.91 -0.01 4.97 16 27 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 28 H 0.17 2.22 7.94 -2.91 -0.02 2.20 16 29 H 0.17 1.87 7.87 -2.38 -0.02 1.85 16 30 H 0.12 4.35 8.06 -2.91 -0.02 4.33 16 Total: -1.00 -59.30 280.28 6.44 -52.86 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.18 Total: 13.07 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: 2.41 Total: -25.95 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.24 Total: -46.74 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: -0.90 Total: -17.02 kcal Atomic # 9 Polarization: -11.28 SS G_CDS: 1.55 Total: -9.73 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 17 Polarization: -8.96 SS G_CDS: -0.07 Total: -9.03 kcal Total: -59.30 6.44 -52.86 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225539819.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.325 kcal (2) G-P(sol) polarization free energy of solvation -59.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds