Wall clock time and date at job start Mon Mar 30 2020 01:51:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38432 * 120.83118 * 2 1 4 4 Cl 1.73604 * 120.42630 * 0.02562 * 3 2 1 5 5 N 1.32603 * 119.14054 * 180.26851 * 3 2 1 6 6 C 1.31782 * 120.94277 * 359.74817 * 5 3 2 7 7 N 1.31754 * 121.82329 * 0.02562 * 6 5 3 8 8 C 1.32866 * 120.75868 * 359.97438 * 7 6 5 9 9 O 1.35529 * 120.50054 * 179.97438 * 8 7 6 10 10 C 1.42904 * 117.00031 * 359.97438 * 9 8 7 11 11 H 1.08998 * 109.47214 * 29.99978 * 10 9 8 12 12 C 1.50695 * 109.46709 * 150.00303 * 10 9 8 13 13 H 1.08000 * 120.00831 * 5.31517 * 12 10 9 14 14 C 1.37882 * 119.99690 * 185.31846 * 12 10 9 15 15 N 1.31518 * 119.99784 * 5.57240 * 14 12 10 16 16 Si 1.86802 * 120.00023 * 185.29745 * 14 12 10 17 17 H 1.48502 * 109.46802 * 84.99951 * 16 14 12 18 18 H 1.48502 * 109.47126 * 204.99804 * 16 14 12 19 19 H 1.48494 * 109.47259 * 325.00143 * 16 14 12 20 20 C 1.53004 * 109.46783 * 269.99900 * 10 9 8 21 21 Cl 1.80299 * 109.47239 * 65.67184 * 20 10 9 22 22 H 1.08996 * 109.47764 * 270.22346 * 1 2 3 23 23 H 1.09000 * 109.47014 * 30.22698 * 1 2 3 24 24 H 1.08996 * 109.47133 * 150.22231 * 1 2 3 25 25 H 1.07998 * 119.08769 * 179.97438 * 6 5 3 26 26 H 0.97002 * 119.99239 * 179.72273 * 15 14 12 27 27 H 1.08997 * 109.46922 * 185.66828 * 20 10 9 28 28 H 1.09005 * 109.47215 * 305.67255 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1887 0.0000 4 17 1.3817 2.7108 0.0007 5 7 3.5420 1.1496 -0.0054 6 6 4.1859 -0.0002 -0.0058 7 7 3.5487 -1.1534 -0.0014 8 6 2.2207 -1.1959 0.0042 9 8 1.5706 -2.3851 0.0082 10 6 2.3766 -3.5651 0.0056 11 1 3.3188 -3.3628 0.5150 12 6 1.6470 -4.6732 0.7203 13 1 0.6330 -4.5213 1.0595 14 6 2.2741 -5.8811 0.9412 15 7 3.5426 -6.0305 0.6275 16 14 1.3242 -7.3030 1.6931 17 1 0.6010 -8.0360 0.6230 18 1 2.2690 -8.2250 2.3731 19 1 0.3473 -6.7784 2.6808 20 6 2.6576 -3.9875 -1.4379 21 17 3.6736 -2.7348 -2.2437 22 1 -0.3634 0.0040 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3633 -0.8919 -0.5104 25 1 5.2659 0.0029 -0.0107 26 1 3.9848 -6.8791 0.7867 27 1 3.1859 -4.9409 -1.4411 28 1 1.7153 -4.0923 -1.9758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226074750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:17 Heat of formation + Delta-G solvation = -15.052514 kcal Electronic energy + Delta-G solvation = -17168.591581 eV Core-core repulsion = 14078.816207 eV Total energy + Delta-G solvation = -3089.775374 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.83953 -38.03048 -36.71326 -34.91315 -33.72223 -33.18242 -32.36536 -29.52697 -27.25170 -25.36986 -24.03017 -22.67905 -21.24074 -18.22044 -17.87905 -16.58919 -15.67373 -15.34547 -14.86630 -14.18443 -14.09118 -13.91228 -13.46365 -13.06277 -12.77530 -12.25467 -12.21304 -12.09231 -11.78112 -11.24214 -11.21267 -11.14925 -10.88356 -10.51921 -10.30579 -10.09655 -9.59806 -9.48100 -9.10093 -8.96940 -8.71569 -8.28332 -6.46834 -4.55618 1.09491 1.46853 1.73139 3.09887 3.17584 3.20319 3.35431 3.65329 4.04255 4.16274 4.44439 4.71341 4.88628 5.02102 5.17511 5.53031 5.82973 6.02074 6.10723 6.17732 6.23467 6.41572 6.74701 7.06164 7.16596 7.45116 7.67000 8.00166 8.35441 8.58096 9.11336 10.60734 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.005766 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.480871 B = 4855.279105 C = 5423.240259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.208 4.208 3 C 0.234 3.766 4 Cl -0.025 7.025 5 N -0.552 5.552 6 C 0.340 3.660 7 N -0.535 5.535 8 C 0.396 3.604 9 O -0.287 6.287 10 C 0.209 3.791 11 H 0.076 0.924 12 C -0.531 4.531 13 H 0.075 0.925 14 C 0.068 3.932 15 N -0.879 5.879 16 Si 0.914 3.086 17 H -0.275 1.275 18 H -0.282 1.282 19 H -0.270 1.270 20 C -0.027 4.027 21 Cl -0.230 7.230 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.200 0.800 26 H 0.272 0.728 27 H 0.119 0.881 28 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.896 9.369 -1.765 9.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.215 4.215 3 C 0.064 3.936 4 Cl 0.003 6.997 5 N -0.274 5.274 6 C 0.052 3.948 7 N -0.264 5.264 8 C 0.208 3.792 9 O -0.189 6.189 10 C 0.154 3.846 11 H 0.094 0.906 12 C -0.569 4.569 13 H 0.093 0.907 14 C -0.137 4.137 15 N -0.515 5.515 16 Si 0.740 3.260 17 H -0.200 1.200 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.090 4.090 21 Cl -0.204 7.204 22 H 0.092 0.908 23 H 0.087 0.913 24 H 0.098 0.902 25 H 0.217 0.783 26 H 0.082 0.918 27 H 0.137 0.863 28 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.096 9.272 -1.826 9.679 hybrid contribution -0.930 -0.722 0.213 1.196 sum -3.025 8.550 -1.613 9.212 Atomic orbital electron populations 1.20523 0.88506 1.03424 1.02885 1.20315 0.99280 0.90098 1.11853 1.21410 0.89737 0.86677 0.95775 1.98380 1.75488 1.29625 1.96201 1.67740 1.07733 1.31883 1.20038 1.24553 1.00529 0.80584 0.89088 1.68419 1.08576 1.30899 1.18544 1.19947 0.86989 0.87447 0.84819 1.86302 1.36940 1.12192 1.83477 1.20655 0.93626 0.78579 0.91704 0.90639 1.20925 1.01324 0.96181 1.38426 0.90651 1.24978 0.94931 0.98883 0.94916 1.69939 1.09253 1.26103 1.46168 0.86234 0.79498 0.80838 0.79398 1.20027 1.20764 1.19432 1.25507 0.94709 0.93392 0.95367 1.98644 1.75462 1.62608 1.83708 0.90842 0.91267 0.90212 0.78350 0.91791 0.86281 0.90912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 9.48 36.01 0.34 -1.01 15 2 C -0.21 -3.56 5.93 -104.17 -0.62 -4.18 15 3 C 0.23 3.80 7.33 -17.15 -0.13 3.68 15 4 Cl -0.03 -0.34 27.64 -51.86 -1.43 -1.77 15 5 N -0.55 -9.24 10.43 -11.74 -0.12 -9.37 15 6 C 0.34 5.70 12.28 -92.20 -1.13 4.57 15 7 N -0.54 -10.51 6.55 -14.66 -0.10 -10.60 15 8 C 0.40 7.88 6.66 -16.72 -0.11 7.77 15 9 O -0.29 -6.31 8.93 -18.28 -0.16 -6.47 15 10 C 0.21 4.98 2.12 -27.88 -0.06 4.92 15 11 H 0.08 1.99 6.99 -51.93 -0.36 1.62 15 12 C -0.53 -13.46 8.82 -34.44 -0.30 -13.76 15 13 H 0.08 1.90 7.82 -52.49 -0.41 1.49 15 14 C 0.07 1.70 5.22 -17.82 -0.09 1.60 15 15 N -0.88 -22.81 11.96 55.43 0.66 -22.15 15 16 Si 0.91 19.47 29.54 -169.99 -5.02 14.45 15 17 H -0.27 -5.76 7.11 56.52 0.40 -5.36 15 18 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 19 H -0.27 -5.72 7.11 56.52 0.40 -5.32 15 20 C -0.03 -0.60 6.22 37.16 0.23 -0.36 15 21 Cl -0.23 -4.74 25.95 -51.86 -1.35 -6.09 15 22 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 23 H 0.07 0.84 7.03 -51.93 -0.37 0.47 15 24 H 0.08 1.17 7.63 -51.93 -0.40 0.78 15 25 H 0.20 2.63 8.06 -52.49 -0.42 2.20 15 26 H 0.27 6.70 8.31 -40.82 -0.34 6.36 15 27 H 0.12 2.84 6.62 -51.93 -0.34 2.49 15 28 H 0.07 1.54 8.14 -51.93 -0.42 1.12 15 LS Contribution 275.13 15.07 4.15 4.15 Total: -1.00 -26.29 275.13 -7.53 -33.81 By element: Atomic # 1 Polarization: 3.10 SS G_CDS: -2.28 Total: 0.81 kcal Atomic # 6 Polarization: 5.09 SS G_CDS: -1.87 Total: 3.22 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.44 Total: -42.12 kcal Atomic # 8 Polarization: -6.31 SS G_CDS: -0.16 Total: -6.47 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.02 Total: 14.45 kcal Atomic # 17 Polarization: -5.08 SS G_CDS: -2.78 Total: -7.86 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.29 -7.53 -33.81 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226074750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.759 kcal (2) G-P(sol) polarization free energy of solvation -26.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds