Wall clock time and date at job start Mon Mar 30 2020 01:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38432 * 120.83118 * 2 1 4 4 Cl 1.73604 * 120.42630 * 0.02562 * 3 2 1 5 5 N 1.32603 * 119.14054 * 180.26851 * 3 2 1 6 6 C 1.31782 * 120.94277 * 359.74817 * 5 3 2 7 7 N 1.31754 * 121.82329 * 0.02562 * 6 5 3 8 8 C 1.32866 * 120.75868 * 359.97438 * 7 6 5 9 9 O 1.35529 * 120.50054 * 179.97438 * 8 7 6 10 10 C 1.42904 * 117.00031 * 359.97438 * 9 8 7 11 11 H 1.08998 * 109.47214 * 29.99978 * 10 9 8 12 12 C 1.50695 * 109.46709 * 150.00303 * 10 9 8 13 13 H 1.08000 * 120.00831 * 5.31517 * 12 10 9 14 14 C 1.37882 * 119.99690 * 185.31846 * 12 10 9 15 15 N 1.31518 * 119.99784 * 5.57240 * 14 12 10 16 16 Si 1.86802 * 120.00023 * 185.29745 * 14 12 10 17 17 H 1.48502 * 109.46802 * 84.99951 * 16 14 12 18 18 H 1.48502 * 109.47126 * 204.99804 * 16 14 12 19 19 H 1.48494 * 109.47259 * 325.00143 * 16 14 12 20 20 C 1.53004 * 109.46783 * 269.99900 * 10 9 8 21 21 Cl 1.80299 * 109.47239 * 65.67184 * 20 10 9 22 22 H 1.08996 * 109.47764 * 270.22346 * 1 2 3 23 23 H 1.09000 * 109.47014 * 30.22698 * 1 2 3 24 24 H 1.08996 * 109.47133 * 150.22231 * 1 2 3 25 25 H 1.07998 * 119.08769 * 179.97438 * 6 5 3 26 26 H 0.97002 * 119.99239 * 179.72273 * 15 14 12 27 27 H 1.08997 * 109.46922 * 185.66828 * 20 10 9 28 28 H 1.09005 * 109.47215 * 305.67255 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2165 1.1887 0.0000 4 17 1.3817 2.7108 0.0007 5 7 3.5420 1.1496 -0.0054 6 6 4.1859 -0.0002 -0.0058 7 7 3.5487 -1.1534 -0.0014 8 6 2.2207 -1.1959 0.0042 9 8 1.5706 -2.3851 0.0082 10 6 2.3766 -3.5651 0.0056 11 1 3.3188 -3.3628 0.5150 12 6 1.6470 -4.6732 0.7203 13 1 0.6330 -4.5213 1.0595 14 6 2.2741 -5.8811 0.9412 15 7 3.5426 -6.0305 0.6275 16 14 1.3242 -7.3030 1.6931 17 1 0.6010 -8.0360 0.6230 18 1 2.2690 -8.2250 2.3731 19 1 0.3473 -6.7784 2.6808 20 6 2.6576 -3.9875 -1.4379 21 17 3.6736 -2.7348 -2.2437 22 1 -0.3634 0.0040 1.0276 23 1 -0.3633 0.8879 -0.5174 24 1 -0.3633 -0.8919 -0.5104 25 1 5.2659 0.0029 -0.0107 26 1 3.9848 -6.8791 0.7867 27 1 3.1859 -4.9409 -1.4411 28 1 1.7153 -4.0923 -1.9758 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226074750.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:16 Heat of formation + Delta-G solvation = -29.126430 kcal Electronic energy + Delta-G solvation = -17169.201872 eV Core-core repulsion = 14078.816207 eV Total energy + Delta-G solvation = -3090.385665 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.23746 -39.61322 -37.92448 -36.62261 -35.47854 -34.55460 -33.84031 -31.32245 -28.50713 -27.25686 -25.52185 -23.99840 -22.94238 -19.71876 -19.42908 -18.36302 -17.19895 -16.85619 -16.52457 -15.60117 -15.47127 -15.41218 -15.00682 -14.72246 -13.98257 -13.93763 -13.69862 -13.39426 -13.20395 -13.01745 -12.85016 -12.56219 -12.44605 -12.14511 -11.79985 -11.59898 -11.30758 -11.19811 -10.68370 -10.59699 -10.30368 -9.76867 -8.36918 -6.53183 -0.22067 0.04551 0.47938 1.41399 1.44332 1.54571 1.60881 2.09425 2.43006 2.67292 2.97672 3.12476 3.34195 3.68891 3.87699 4.24651 4.35059 4.38616 4.73752 4.76310 4.88970 5.03106 5.23596 5.28135 5.50909 5.70258 5.86514 6.29268 6.64244 7.00391 7.18422 8.70725 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.025908 B = 0.005766 C = 0.005162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.480871 B = 4855.279105 C = 5423.240259 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.208 4.208 3 C 0.230 3.770 4 Cl 0.007 6.993 5 N -0.550 5.550 6 C 0.337 3.663 7 N -0.561 5.561 8 C 0.369 3.631 9 O -0.298 6.298 10 C 0.218 3.782 11 H 0.045 0.955 12 C -0.552 4.552 13 H 0.070 0.930 14 C 0.029 3.971 15 N -0.905 5.905 16 Si 0.976 3.024 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.268 1.268 20 C -0.018 4.018 21 Cl -0.214 7.214 22 H 0.085 0.915 23 H 0.091 0.909 24 H 0.071 0.929 25 H 0.229 0.771 26 H 0.275 0.725 27 H 0.101 0.899 28 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.632 10.249 -1.765 11.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.215 4.215 3 C 0.059 3.941 4 Cl 0.036 6.964 5 N -0.272 5.272 6 C 0.049 3.951 7 N -0.290 5.290 8 C 0.182 3.818 9 O -0.201 6.201 10 C 0.163 3.837 11 H 0.063 0.937 12 C -0.590 4.590 13 H 0.089 0.911 14 C -0.173 4.173 15 N -0.541 5.541 16 Si 0.799 3.201 17 H -0.191 1.191 18 H -0.205 1.205 19 H -0.192 1.192 20 C -0.081 4.081 21 Cl -0.188 7.188 22 H 0.103 0.897 23 H 0.110 0.890 24 H 0.090 0.910 25 H 0.245 0.755 26 H 0.084 0.916 27 H 0.119 0.881 28 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -2.828 10.188 -1.833 10.731 hybrid contribution -0.671 -0.797 0.203 1.062 sum -3.499 9.390 -1.630 10.153 Atomic orbital electron populations 1.20596 0.86570 1.04109 1.03829 1.20572 1.00697 0.89342 1.10904 1.21677 0.89734 0.87796 0.94847 1.98390 1.74793 1.27321 1.95933 1.67866 1.08051 1.31705 1.19562 1.25151 1.01722 0.79899 0.88283 1.68380 1.08864 1.32434 1.19296 1.20208 0.87634 0.87393 0.86552 1.86240 1.36904 1.12481 1.84511 1.20282 0.92296 0.79143 0.91962 0.93692 1.21179 1.01339 0.97220 1.39233 0.91137 1.25736 0.95619 1.00931 0.95060 1.70033 1.10485 1.26733 1.46881 0.85287 0.78241 0.77804 0.78743 1.19121 1.20472 1.19205 1.25190 0.94996 0.92890 0.95040 1.98636 1.75064 1.61881 1.83252 0.89696 0.89035 0.91008 0.75459 0.91606 0.88058 0.90110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.49 9.48 71.24 0.68 -1.82 15 2 C -0.21 -6.89 5.93 -19.57 -0.12 -7.01 15 3 C 0.23 7.06 7.33 84.62 0.62 7.68 15 4 Cl 0.01 0.17 27.64 -2.72 -0.08 0.09 15 5 N -0.55 -17.52 10.43 -191.05 -1.99 -19.51 15 6 C 0.34 10.92 12.28 180.90 2.22 13.15 15 7 N -0.56 -21.97 6.55 -312.93 -2.05 -24.02 15 8 C 0.37 14.69 6.66 84.78 0.56 15.25 15 9 O -0.30 -13.28 8.93 -88.33 -0.79 -14.07 15 10 C 0.22 10.63 2.12 29.85 0.06 10.70 15 11 H 0.05 2.45 6.99 -2.39 -0.02 2.43 15 12 C -0.55 -28.41 8.82 25.60 0.23 -28.19 15 13 H 0.07 3.60 7.82 -2.91 -0.02 3.58 15 14 C 0.03 1.45 5.22 84.66 0.44 1.89 15 15 N -0.91 -47.55 11.96 21.45 0.26 -47.30 15 16 Si 0.98 39.70 29.54 68.60 2.03 41.73 15 17 H -0.27 -10.42 7.11 99.48 0.71 -9.71 15 18 H -0.28 -11.16 7.11 99.48 0.71 -10.46 15 19 H -0.27 -10.71 7.11 99.48 0.71 -10.00 15 20 C -0.02 -0.81 6.22 71.98 0.45 -0.36 15 21 Cl -0.21 -8.80 25.95 -2.72 -0.07 -8.87 15 22 H 0.08 2.07 8.14 -2.39 -0.02 2.05 15 23 H 0.09 1.98 7.03 -2.39 -0.02 1.97 15 24 H 0.07 2.04 7.63 -2.39 -0.02 2.02 15 25 H 0.23 5.68 8.06 -2.91 -0.02 5.66 15 26 H 0.27 13.60 8.31 -92.71 -0.77 12.83 15 27 H 0.10 4.93 6.62 -2.39 -0.02 4.91 15 28 H 0.08 3.45 8.14 -2.38 -0.02 3.43 15 Total: -1.00 -55.58 275.13 3.65 -51.93 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 1.20 Total: 8.72 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 5.14 Total: 11.29 kcal Atomic # 7 Polarization: -87.04 SS G_CDS: -3.79 Total: -90.82 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: -0.79 Total: -14.07 kcal Atomic # 14 Polarization: 39.70 SS G_CDS: 2.03 Total: 41.73 kcal Atomic # 17 Polarization: -8.63 SS G_CDS: -0.15 Total: -8.77 kcal Total: -55.58 3.65 -51.93 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226074750.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.805 kcal (2) G-P(sol) polarization free energy of solvation -55.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds