Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39378 * 120.04674 * 55.60491 * 3 2 1 5 5 C 1.39386 * 119.80359 * 179.79723 * 4 3 2 6 6 C 1.43199 * 120.04686 * 180.20985 * 5 4 3 7 7 N 5.90799 * 144.65147 * 55.81249 * 2 1 3 8 8 C 1.39653 * 119.90401 * 0.45671 * 5 4 3 9 9 C 1.38557 * 120.09499 * 359.77376 * 8 5 4 10 10 O 1.35925 * 119.90303 * 179.97438 * 9 8 5 11 11 C 1.42894 * 116.99932 * 180.35773 * 10 9 8 12 12 H 1.08993 * 109.47369 * 23.86572 * 11 10 9 13 13 C 1.50703 * 109.46776 * 143.86396 * 11 10 9 14 14 H 1.07995 * 120.00194 * 25.53423 * 13 11 10 15 15 C 1.37879 * 119.99835 * 205.53648 * 13 11 10 16 16 N 1.31522 * 120.00053 * 185.07015 * 15 13 11 17 17 Si 1.86797 * 120.00169 * 5.07442 * 15 13 11 18 18 H 1.48502 * 109.47092 * 94.52375 * 17 15 13 19 19 H 1.48503 * 109.47291 * 214.52668 * 17 15 13 20 20 H 1.48499 * 109.47133 * 334.52441 * 17 15 13 21 21 C 1.52999 * 109.47534 * 263.85920 * 11 10 9 22 22 Cl 1.80309 * 109.46715 * 63.43429 * 21 11 10 23 23 C 1.38564 * 120.19817 * 0.02562 * 9 8 5 24 24 H 1.07997 * 120.10075 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.95074 * 179.79554 * 8 5 4 26 26 H 0.96994 * 119.99870 * 179.97438 * 16 15 13 27 27 H 1.08992 * 109.47571 * 183.43454 * 21 11 10 28 28 H 1.09001 * 109.47311 * 303.44340 * 21 11 10 29 29 H 1.07999 * 119.95071 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.6806 -0.9955 5 6 4.6600 -0.6731 -0.9931 6 6 5.3826 -1.3675 -2.0160 7 7 5.9549 -1.9206 -2.8274 8 6 5.3508 0.0083 0.0113 9 6 4.6526 0.6801 1.0017 10 8 5.3290 1.3416 1.9777 11 6 4.5474 2.0066 2.9721 12 1 3.5641 1.5404 3.0331 13 6 5.2375 1.9000 4.3076 14 1 6.3084 1.7678 4.3530 15 6 4.5017 1.9714 5.4715 16 7 5.1125 1.9788 6.6362 17 14 2.6373 2.0574 5.3940 18 1 2.0728 0.6904 5.5274 19 1 2.1347 2.9107 6.5006 20 1 2.2223 2.6395 4.0925 21 6 4.3903 3.4812 2.5956 22 17 3.4756 3.6118 1.0472 23 6 3.2670 0.6789 1.0009 24 1 2.7288 -1.2096 -1.7687 25 1 6.4308 0.0118 0.0158 26 1 4.5949 2.0294 7.4549 27 1 3.8464 4.0016 3.3838 28 1 5.3752 3.9323 2.4748 29 1 2.7268 1.2035 1.7751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001226896696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = 38.342545 kcal Electronic energy + Delta-G solvation = -17953.382564 eV Core-core repulsion = 14868.355423 eV Total energy + Delta-G solvation = -3085.027141 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.26495 -38.04245 -36.84406 -35.93746 -35.33652 -33.47942 -31.80328 -31.03406 -29.68509 -25.50119 -24.69733 -23.65615 -21.60470 -19.88365 -17.75013 -16.88231 -16.72510 -16.19421 -15.89022 -15.23259 -14.64240 -14.07407 -13.77099 -13.64609 -13.50679 -13.32607 -13.17856 -13.12652 -12.96758 -12.81461 -12.27552 -12.04563 -11.84954 -11.53652 -11.31915 -11.20531 -10.94877 -10.23713 -10.07615 -9.84525 -9.58997 -9.06012 -9.04622 -8.04089 -6.60038 -4.68340 0.49406 0.95770 2.46919 2.63646 2.64244 2.77134 2.95572 3.00011 3.08154 3.20566 3.39476 3.79527 3.87219 3.93234 4.03313 4.70424 4.83488 4.93408 4.98094 5.23151 5.50927 5.52832 5.72417 5.81045 6.00760 6.05490 6.13782 6.34082 6.47066 6.95112 7.34588 7.40850 7.59512 8.07746 8.53332 8.94464 10.50267 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.006420 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.232820 B = 4360.443003 C = 4830.020565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.415 5.415 2 C 0.261 3.739 3 C 0.008 3.992 4 C -0.076 4.076 5 C 0.005 3.995 6 C 0.265 3.735 7 N -0.418 5.418 8 C -0.086 4.086 9 C 0.159 3.841 10 O -0.287 6.287 11 C 0.177 3.823 12 H 0.051 0.949 13 C -0.529 4.529 14 H 0.095 0.905 15 C 0.089 3.911 16 N -0.865 5.865 17 Si 0.854 3.146 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.255 1.255 21 C -0.042 4.042 22 Cl -0.229 7.229 23 C -0.128 4.128 24 H 0.139 0.861 25 H 0.147 0.853 26 H 0.275 0.725 27 H 0.099 0.901 28 H 0.099 0.901 29 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -0.798 -9.322 9.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.091 5.091 2 C -0.055 4.055 3 C 0.004 3.996 4 C -0.099 4.099 5 C 0.001 3.999 6 C -0.050 4.050 7 N -0.093 5.093 8 C -0.108 4.108 9 C 0.111 3.889 10 O -0.199 6.199 11 C 0.121 3.879 12 H 0.068 0.932 13 C -0.566 4.566 14 H 0.113 0.887 15 C -0.118 4.118 16 N -0.499 5.499 17 Si 0.678 3.322 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.179 1.179 21 C -0.105 4.105 22 Cl -0.203 7.203 23 C -0.150 4.150 24 H 0.157 0.843 25 H 0.165 0.835 26 H 0.086 0.914 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.219 -1.595 -10.409 11.012 hybrid contribution -1.019 0.490 0.599 1.279 sum -4.238 -1.105 -9.810 10.743 Atomic orbital electron populations 1.81233 1.11932 1.08224 1.07662 1.25532 0.92481 0.93698 0.93758 1.15406 0.84324 1.02103 0.97752 1.20822 0.91852 0.99081 0.98160 1.15299 0.91185 1.00461 0.92957 1.25461 0.93358 0.93277 0.92946 1.81279 1.08290 1.09455 1.10280 1.20539 1.01076 0.97036 0.92176 1.18657 0.89535 0.91292 0.89399 1.86323 1.36203 1.62727 1.34690 1.20965 0.93500 0.86729 0.86688 0.93203 1.20667 0.97334 1.53021 0.85550 0.88750 1.24892 0.98577 0.93391 0.94988 1.69823 1.36549 1.45747 0.97812 0.87198 0.85604 0.79912 0.79468 1.18988 1.19884 1.17945 1.26121 0.98221 1.02186 0.83930 1.98679 1.79673 1.98668 1.43299 1.21763 0.94202 0.99763 0.99267 0.84310 0.83492 0.91413 0.88302 0.88211 0.83394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.41 18.54 41.84 0.78 -5.64 15 2 C 0.26 3.54 15.32 -22.47 -0.34 3.20 15 3 C 0.01 0.09 5.72 -107.02 -0.61 -0.52 15 4 C -0.08 -0.77 9.45 -38.73 -0.37 -1.14 15 5 C 0.00 0.05 5.72 -107.02 -0.61 -0.56 15 6 C 0.27 3.06 15.32 -22.45 -0.34 2.72 15 7 N -0.42 -5.66 18.54 41.86 0.78 -4.88 15 8 C -0.09 -1.03 9.68 -38.94 -0.38 -1.41 15 9 C 0.16 2.33 6.03 -39.34 -0.24 2.10 15 10 O -0.29 -5.12 9.69 -19.50 -0.19 -5.31 15 11 C 0.18 3.41 1.70 -27.88 -0.05 3.36 15 12 H 0.05 0.96 2.91 -51.93 -0.15 0.81 15 13 C -0.53 -12.45 9.23 -34.44 -0.32 -12.77 15 14 H 0.09 2.47 8.06 -52.49 -0.42 2.05 15 15 C 0.09 2.16 5.47 -17.82 -0.10 2.06 15 16 N -0.87 -22.72 13.96 55.43 0.77 -21.95 15 17 Si 0.85 17.66 26.37 -169.99 -4.48 13.18 15 18 H -0.26 -5.51 7.11 56.52 0.40 -5.11 15 19 H -0.27 -5.70 7.11 56.52 0.40 -5.30 15 20 H -0.26 -4.86 5.97 56.52 0.34 -4.52 15 21 C -0.04 -0.72 5.95 37.16 0.22 -0.50 15 22 Cl -0.23 -3.64 25.77 -51.86 -1.34 -4.98 15 23 C -0.13 -1.82 6.88 -38.93 -0.27 -2.09 15 24 H 0.14 1.10 8.06 -52.49 -0.42 0.68 15 25 H 0.15 1.57 8.06 -52.48 -0.42 1.15 15 26 H 0.28 6.74 8.31 -40.82 -0.34 6.40 15 27 H 0.10 1.71 6.91 -51.93 -0.36 1.35 15 28 H 0.10 1.65 8.14 -51.93 -0.42 1.23 15 29 H 0.15 2.30 5.05 -52.49 -0.27 2.04 15 LS Contribution 285.02 15.07 4.30 4.30 Total: -1.00 -25.61 285.02 -4.46 -30.07 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -1.66 Total: 0.77 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: -3.40 Total: -5.56 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 2.33 Total: -32.47 kcal Atomic # 8 Polarization: -5.12 SS G_CDS: -0.19 Total: -5.31 kcal Atomic # 14 Polarization: 17.66 SS G_CDS: -4.48 Total: 13.18 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -1.34 Total: -4.98 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.61 -4.46 -30.07 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226896696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.412 kcal (2) G-P(sol) polarization free energy of solvation -25.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds