Wall clock time and date at job start Mon Mar 30 2020 02:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43194 * 179.97438 * 2 1 4 4 C 1.39378 * 120.04674 * 55.60491 * 3 2 1 5 5 C 1.39386 * 119.80359 * 179.79723 * 4 3 2 6 6 C 1.43199 * 120.04686 * 180.20985 * 5 4 3 7 7 N 5.90799 * 144.65147 * 55.81249 * 2 1 3 8 8 C 1.39653 * 119.90401 * 0.45671 * 5 4 3 9 9 C 1.38557 * 120.09499 * 359.77376 * 8 5 4 10 10 O 1.35925 * 119.90303 * 179.97438 * 9 8 5 11 11 C 1.42894 * 116.99932 * 180.35773 * 10 9 8 12 12 H 1.08993 * 109.47369 * 23.86572 * 11 10 9 13 13 C 1.50703 * 109.46776 * 143.86396 * 11 10 9 14 14 H 1.07995 * 120.00194 * 25.53423 * 13 11 10 15 15 C 1.37879 * 119.99835 * 205.53648 * 13 11 10 16 16 N 1.31522 * 120.00053 * 185.07015 * 15 13 11 17 17 Si 1.86797 * 120.00169 * 5.07442 * 15 13 11 18 18 H 1.48502 * 109.47092 * 94.52375 * 17 15 13 19 19 H 1.48503 * 109.47291 * 214.52668 * 17 15 13 20 20 H 1.48499 * 109.47133 * 334.52441 * 17 15 13 21 21 C 1.52999 * 109.47534 * 263.85920 * 11 10 9 22 22 Cl 1.80309 * 109.46715 * 63.43429 * 21 11 10 23 23 C 1.38564 * 120.19817 * 0.02562 * 9 8 5 24 24 H 1.07997 * 120.10075 * 0.02562 * 4 3 2 25 25 H 1.08004 * 119.95074 * 179.79554 * 8 5 4 26 26 H 0.96994 * 119.99870 * 179.97438 * 16 15 13 27 27 H 1.08992 * 109.47571 * 183.43454 * 21 11 10 28 28 H 1.09001 * 109.47311 * 303.44340 * 21 11 10 29 29 H 1.07999 * 119.95071 * 179.97438 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2662 -0.6806 -0.9955 5 6 4.6600 -0.6731 -0.9931 6 6 5.3826 -1.3675 -2.0160 7 7 5.9549 -1.9206 -2.8274 8 6 5.3508 0.0083 0.0113 9 6 4.6526 0.6801 1.0017 10 8 5.3290 1.3416 1.9777 11 6 4.5474 2.0066 2.9721 12 1 3.5641 1.5404 3.0331 13 6 5.2375 1.9000 4.3076 14 1 6.3084 1.7678 4.3530 15 6 4.5017 1.9714 5.4715 16 7 5.1125 1.9788 6.6362 17 14 2.6373 2.0574 5.3940 18 1 2.0728 0.6904 5.5274 19 1 2.1347 2.9107 6.5006 20 1 2.2223 2.6395 4.0925 21 6 4.3903 3.4812 2.5956 22 17 3.4756 3.6118 1.0472 23 6 3.2670 0.6789 1.0009 24 1 2.7288 -1.2096 -1.7687 25 1 6.4308 0.0118 0.0158 26 1 4.5949 2.0294 7.4549 27 1 3.8464 4.0016 3.3838 28 1 5.3752 3.9323 2.4748 29 1 2.7268 1.2035 1.7751 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001226896696.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:42 Heat of formation + Delta-G solvation = 25.043250 kcal Electronic energy + Delta-G solvation = -17953.959265 eV Core-core repulsion = 14868.355423 eV Total energy + Delta-G solvation = -3085.603842 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.40264 -39.24824 -37.90385 -37.06123 -36.64367 -35.18979 -32.95388 -32.39426 -30.88485 -27.18097 -25.79713 -24.69525 -22.97605 -21.11609 -19.36831 -18.11696 -17.85505 -17.34285 -17.04402 -16.58123 -16.04991 -15.22137 -15.09131 -14.89309 -14.70296 -14.66493 -14.39250 -14.26061 -14.19645 -14.00975 -13.45307 -13.31960 -13.03735 -12.84651 -12.80259 -12.52793 -12.27852 -11.87438 -11.48781 -11.23093 -11.12565 -10.82427 -10.08050 -9.18034 -8.45496 -6.57838 -0.52678 -0.01284 1.27369 1.35607 1.40240 1.43178 1.46650 1.58920 1.61631 2.20123 2.20851 2.25415 2.67829 2.86629 2.92132 3.00209 3.76950 3.97521 3.97765 4.09873 4.13697 4.25271 4.42970 4.58095 4.90845 5.02936 5.07108 5.13484 5.25459 5.39112 5.95598 6.35243 6.41504 6.51528 6.67723 7.09886 8.69219 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017267 B = 0.006420 C = 0.005796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.232820 B = 4360.443003 C = 4830.020565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.280 3.720 3 C 0.008 3.992 4 C -0.044 4.044 5 C 0.014 3.986 6 C 0.289 3.711 7 N -0.447 5.447 8 C -0.069 4.069 9 C 0.132 3.868 10 O -0.305 6.305 11 C 0.184 3.816 12 H 0.056 0.944 13 C -0.532 4.532 14 H 0.052 0.948 15 C 0.042 3.958 16 N -0.918 5.918 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.275 1.275 20 H -0.228 1.228 21 C -0.040 4.040 22 Cl -0.208 7.208 23 C -0.132 4.132 24 H 0.171 0.829 25 H 0.160 0.840 26 H 0.276 0.724 27 H 0.100 0.900 28 H 0.103 0.897 29 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.838 -1.158 -11.609 12.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.035 4.035 3 C 0.004 3.996 4 C -0.067 4.067 5 C 0.011 3.989 6 C -0.026 4.026 7 N -0.122 5.122 8 C -0.091 4.091 9 C 0.086 3.914 10 O -0.219 6.219 11 C 0.128 3.872 12 H 0.073 0.927 13 C -0.569 4.569 14 H 0.071 0.929 15 C -0.160 4.160 16 N -0.555 5.555 17 Si 0.729 3.271 18 H -0.189 1.189 19 H -0.200 1.200 20 H -0.151 1.151 21 C -0.103 4.103 22 Cl -0.182 7.182 23 C -0.154 4.154 24 H 0.189 0.811 25 H 0.177 0.823 26 H 0.086 0.914 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -4.582 -1.958 -12.738 13.678 hybrid contribution -0.509 0.527 1.146 1.360 sum -5.091 -1.431 -11.592 12.741 Atomic orbital electron populations 1.81266 1.12894 1.09407 1.08749 1.25562 0.92429 0.92715 0.92788 1.15285 0.83624 1.02680 0.98002 1.21108 0.91511 0.96756 0.97342 1.15138 0.91253 1.00159 0.92361 1.25285 0.92597 0.92463 0.92299 1.81331 1.09113 1.10481 1.11307 1.20662 1.01819 0.95445 0.91174 1.18761 0.89870 0.92901 0.89887 1.86237 1.36403 1.63809 1.35410 1.20654 0.93052 0.88038 0.85440 0.92652 1.20801 0.95718 1.52303 0.88121 0.92930 1.25611 1.02967 0.93031 0.94427 1.69955 1.38434 1.48410 0.98713 0.86334 0.80176 0.79986 0.80613 1.18893 1.20001 1.15093 1.25745 0.98918 1.00665 0.84934 1.98676 1.79103 1.98599 1.41800 1.21652 0.93999 1.00223 0.99555 0.81108 0.82256 0.91403 0.88182 0.87827 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.80 18.54 19.00 0.35 -12.44 15 2 C 0.28 6.80 15.32 88.33 1.35 8.16 15 3 C 0.01 0.16 5.72 -21.42 -0.12 0.04 15 4 C -0.04 -0.71 9.45 22.82 0.22 -0.50 15 5 C 0.01 0.26 5.72 -21.42 -0.12 0.13 15 6 C 0.29 5.70 15.32 88.32 1.35 7.05 15 7 N -0.45 -10.90 18.54 19.01 0.35 -10.55 15 8 C -0.07 -1.47 9.68 22.69 0.22 -1.25 15 9 C 0.13 3.63 6.03 22.42 0.14 3.77 15 10 O -0.31 -10.71 9.69 -92.70 -0.90 -11.61 15 11 C 0.18 7.01 1.70 29.85 0.05 7.07 15 12 H 0.06 2.05 2.91 -2.39 -0.01 2.05 15 13 C -0.53 -25.77 9.23 25.60 0.24 -25.53 15 14 H 0.05 2.92 8.06 -2.91 -0.02 2.89 15 15 C 0.04 2.08 5.47 84.65 0.46 2.55 15 16 N -0.92 -50.08 13.96 21.45 0.30 -49.78 15 17 Si 0.91 36.12 26.37 68.60 1.81 37.93 15 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 15 19 H -0.27 -10.95 7.11 99.48 0.71 -10.24 15 20 H -0.23 -7.97 5.97 99.48 0.59 -7.38 15 21 C -0.04 -1.33 5.95 71.98 0.43 -0.90 15 22 Cl -0.21 -6.13 25.77 -2.72 -0.07 -6.20 15 23 C -0.13 -3.46 6.88 22.69 0.16 -3.30 15 24 H 0.17 1.77 8.06 -2.91 -0.02 1.75 15 25 H 0.16 2.99 8.06 -2.91 -0.02 2.97 15 26 H 0.28 14.04 8.31 -92.71 -0.77 13.27 15 27 H 0.10 3.32 6.91 -2.39 -0.02 3.31 15 28 H 0.10 3.37 8.14 -2.39 -0.02 3.35 15 29 H 0.14 3.91 5.05 -2.91 -0.01 3.90 15 Total: -1.00 -56.55 285.02 7.32 -49.23 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: 1.11 Total: 6.14 kcal Atomic # 6 Polarization: -7.09 SS G_CDS: 4.37 Total: -2.72 kcal Atomic # 7 Polarization: -73.78 SS G_CDS: 1.00 Total: -72.77 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: -0.90 Total: -11.61 kcal Atomic # 14 Polarization: 36.12 SS G_CDS: 1.81 Total: 37.93 kcal Atomic # 17 Polarization: -6.13 SS G_CDS: -0.07 Total: -6.20 kcal Total: -56.55 7.32 -49.23 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001226896696.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.276 kcal (2) G-P(sol) polarization free energy of solvation -56.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds