Wall clock time and date at job start Mon Mar 30 2020 02:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39949 * 120.00763 * 272.32918 * 3 2 1 5 5 C 1.37704 * 120.24057 * 180.02562 * 4 3 2 6 6 C 1.38858 * 120.25465 * 359.97438 * 5 4 3 7 7 O 1.35576 * 119.99647 * 179.97438 * 6 5 4 8 8 C 1.42905 * 116.99645 * 6.07954 * 7 6 5 9 9 H 1.08996 * 109.47453 * 17.51269 * 8 7 6 10 10 C 1.50706 * 109.46872 * 137.51559 * 8 7 6 11 11 H 1.08001 * 120.00059 * 5.38258 * 10 8 7 12 12 C 1.37877 * 119.99714 * 185.38792 * 10 8 7 13 13 N 1.31513 * 119.99430 * 199.46779 * 12 10 8 14 14 Si 1.86800 * 120.00218 * 19.47055 * 12 10 8 15 15 H 1.48494 * 109.46929 * 179.97438 * 14 12 10 16 16 H 1.48507 * 109.46941 * 299.99758 * 14 12 10 17 17 H 1.48495 * 109.46952 * 59.99763 * 14 12 10 18 18 C 1.52998 * 109.47010 * 257.50982 * 8 7 6 19 19 Cl 1.80299 * 109.46945 * 64.55292 * 18 8 7 20 20 C 1.40340 * 120.00786 * 0.25589 * 6 5 4 21 21 C 1.43193 * 120.12218 * 179.72396 * 20 6 5 22 22 N 5.90843 * 144.67930 * 92.62521 * 2 1 3 23 23 C 1.39346 * 119.76229 * 359.50658 * 20 6 5 24 24 H 1.07999 * 119.87920 * 0.02562 * 4 3 2 25 25 H 1.08005 * 119.87039 * 179.97438 * 5 4 3 26 26 H 0.96999 * 120.00651 * 354.96131 * 13 12 10 27 27 H 1.08996 * 109.47170 * 184.55174 * 18 8 7 28 28 H 1.09006 * 109.47382 * 304.55504 * 18 8 7 29 29 H 1.07999 * 120.12827 * 180.23197 * 23 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2679 -0.0483 1.2109 5 6 4.6450 -0.0474 1.2165 6 6 5.3494 0.0016 0.0209 7 8 6.7051 0.0028 0.0326 8 6 7.3432 -0.1823 1.2978 9 1 6.6292 -0.6009 2.0070 10 6 8.5071 -1.1266 1.1401 11 1 8.7903 -1.4753 0.1580 12 6 9.2102 -1.5454 2.2497 13 7 10.4219 -2.0379 2.1129 14 14 8.4418 -1.4133 3.9472 15 1 9.3949 -1.9270 4.9633 16 1 8.1258 0.0083 4.2382 17 1 7.1935 -2.2165 3.9893 18 6 7.8470 1.1658 1.8169 19 17 6.4424 2.2513 2.1325 20 6 4.6583 0.0558 -1.1993 21 6 5.3823 0.1123 -2.4334 22 7 5.9568 0.1565 -3.4124 23 6 3.2648 0.0498 -1.2058 24 1 2.7261 -0.0869 2.1443 25 1 5.1791 -0.0849 2.1545 26 1 10.7928 -2.1747 1.2271 27 1 8.4037 1.0140 2.7416 28 1 8.4983 1.6219 1.0713 29 1 2.7270 0.0876 -2.1416 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001229034075.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:36 Heat of formation + Delta-G solvation = 34.397151 kcal Electronic energy + Delta-G solvation = -17989.383814 eV Core-core repulsion = 14904.185588 eV Total energy + Delta-G solvation = -3085.198226 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.36730 -38.04841 -36.57953 -35.87660 -35.39613 -33.65122 -31.70913 -30.93054 -29.93529 -25.14105 -24.13681 -23.85106 -21.38772 -20.06831 -18.16843 -17.74020 -16.77914 -16.21872 -15.36106 -14.88433 -14.48272 -14.06044 -13.82027 -13.72607 -13.40291 -13.38497 -13.12022 -13.09442 -12.73580 -12.68370 -12.29928 -12.06046 -12.02478 -11.49245 -11.24903 -11.00960 -10.74043 -10.32175 -10.10844 -9.78131 -9.42480 -9.15990 -8.70953 -8.13037 -7.01590 -4.67028 0.70532 0.87770 2.58835 2.67481 2.75829 2.89028 3.00737 3.10475 3.23352 3.34631 3.44422 3.76196 3.93220 4.02506 4.12042 4.68683 4.70363 4.84874 5.02337 5.29334 5.48818 5.60079 5.67669 5.74546 5.90153 6.05820 6.13002 6.35420 6.46421 7.11809 7.43322 7.57600 7.73946 7.92041 8.44957 9.03252 10.39604 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.017895 B = 0.006263 C = 0.005646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.291305 B = 4469.909777 C = 4958.407278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.269 3.731 3 C -0.092 4.092 4 C 0.000 4.000 5 C -0.207 4.207 6 C 0.235 3.765 7 O -0.281 6.281 8 C 0.185 3.815 9 H 0.049 0.951 10 C -0.618 4.618 11 H 0.077 0.923 12 C 0.043 3.957 13 N -0.870 5.870 14 Si 1.025 2.975 15 H -0.272 1.272 16 H -0.268 1.268 17 H -0.270 1.270 18 C -0.050 4.050 19 Cl -0.227 7.227 20 C -0.081 4.081 21 C 0.271 3.729 22 N -0.421 5.421 23 C 0.018 3.982 24 H 0.139 0.861 25 H 0.155 0.845 26 H 0.278 0.722 27 H 0.108 0.892 28 H 0.096 0.904 29 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.175 4.346 1.644 11.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.109 5.109 2 C -0.046 4.046 3 C -0.096 4.096 4 C -0.021 4.021 5 C -0.226 4.226 6 C 0.181 3.819 7 O -0.190 6.190 8 C 0.129 3.871 9 H 0.066 0.934 10 C -0.655 4.655 11 H 0.095 0.905 12 C -0.167 4.167 13 N -0.501 5.501 14 Si 0.850 3.150 15 H -0.196 1.196 16 H -0.194 1.194 17 H -0.196 1.196 18 C -0.112 4.112 19 Cl -0.201 7.201 20 C -0.086 4.086 21 C -0.045 4.045 22 N -0.097 5.097 23 C -0.005 4.005 24 H 0.157 0.843 25 H 0.172 0.828 26 H 0.089 0.911 27 H 0.126 0.874 28 H 0.115 0.885 29 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -10.602 4.261 1.606 11.539 hybrid contribution 0.084 0.269 -1.002 1.041 sum -10.518 4.530 0.604 11.468 Atomic orbital electron populations 1.81247 1.12045 1.10353 1.07297 1.25501 0.92342 0.93035 0.93704 1.15535 0.84387 1.15445 0.94259 1.21082 0.93297 0.90907 0.96772 1.21390 0.94387 1.08272 0.98540 1.19396 0.84837 0.85596 0.92056 1.86210 1.13762 1.82268 1.36797 1.21044 0.93862 0.92014 0.80134 0.93387 1.21897 1.15808 1.30267 0.97480 0.90472 1.25800 0.93597 0.93680 1.03615 1.70840 1.11497 1.40219 1.27508 0.84295 0.77042 0.77897 0.75756 1.19629 1.19407 1.19573 1.26310 0.89135 0.91497 1.04306 1.98670 1.52692 1.71720 1.97012 1.15009 0.91029 1.17003 0.85563 1.25112 0.93420 0.93497 0.92426 1.81184 1.07318 1.09551 1.11673 1.20851 0.90775 0.91312 0.97571 0.84281 0.82783 0.91106 0.87436 0.88500 0.83819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -5.83 18.54 41.84 0.78 -5.05 15 2 C 0.27 3.04 15.32 -22.47 -0.34 2.70 15 3 C -0.09 -0.95 5.73 -106.91 -0.61 -1.56 15 4 C 0.00 0.00 9.73 -39.14 -0.38 -0.38 15 5 C -0.21 -2.70 7.52 -39.55 -0.30 -3.00 15 6 C 0.23 3.60 6.27 -38.56 -0.24 3.36 15 7 O -0.28 -5.36 9.06 -18.42 -0.17 -5.53 15 8 C 0.18 3.64 1.71 -27.88 -0.05 3.59 15 9 H 0.05 0.89 3.90 -51.93 -0.20 0.68 15 10 C -0.62 -14.88 9.13 -34.44 -0.31 -15.19 15 11 H 0.08 2.10 8.06 -52.49 -0.42 1.67 15 12 C 0.04 1.05 5.28 -17.82 -0.09 0.96 15 13 N -0.87 -23.21 13.70 55.43 0.76 -22.45 15 14 Si 1.02 20.25 26.35 -169.99 -4.48 15.77 15 15 H -0.27 -5.54 7.11 56.52 0.40 -5.14 15 16 H -0.27 -4.69 5.82 56.52 0.33 -4.36 15 17 H -0.27 -4.97 7.11 56.52 0.40 -4.57 15 18 C -0.05 -0.90 6.03 37.16 0.22 -0.67 15 19 Cl -0.23 -3.56 26.37 -51.86 -1.37 -4.93 15 20 C -0.08 -1.11 5.74 -106.77 -0.61 -1.72 15 21 C 0.27 4.30 14.86 -22.48 -0.33 3.97 15 22 N -0.42 -7.56 18.54 41.84 0.78 -6.78 15 23 C 0.02 0.19 9.45 -38.75 -0.37 -0.18 15 24 H 0.14 1.08 8.06 -52.49 -0.42 0.65 15 25 H 0.15 2.06 5.03 -52.48 -0.26 1.79 15 26 H 0.28 7.46 8.73 -40.82 -0.36 7.10 15 27 H 0.11 1.95 5.01 -51.93 -0.26 1.69 15 28 H 0.10 1.77 8.14 -51.93 -0.42 1.34 15 29 H 0.14 1.16 8.06 -52.49 -0.42 0.73 15 LS Contribution 284.36 15.07 4.29 4.29 Total: -1.00 -26.71 284.36 -4.48 -31.20 By element: Atomic # 1 Polarization: 3.26 SS G_CDS: -1.64 Total: 1.61 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -3.42 Total: -8.13 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 2.31 Total: -34.29 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.17 Total: -5.53 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.48 Total: 15.77 kcal Atomic # 17 Polarization: -3.56 SS G_CDS: -1.37 Total: -4.93 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -26.71 -4.48 -31.20 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001229034075.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.594 kcal (2) G-P(sol) polarization free energy of solvation -26.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.197 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds