Wall clock time and date at job start Mon Mar 30 2020 01:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.32310 * 120.47535 * 2 1 4 4 C 1.31886 * 120.86282 * 180.33252 * 3 2 1 5 5 Cl 1.73604 * 119.07457 * 179.68565 * 4 3 2 6 6 N 1.31918 * 121.85252 * 359.65958 * 4 3 2 7 7 C 1.32283 * 120.85792 * 0.02562 * 6 4 3 8 8 C 1.39053 * 120.47440 * 179.71889 * 2 1 3 9 9 O 1.35952 * 120.83811 * 359.97090 * 8 2 1 10 10 C 1.42893 * 116.99693 * 179.43662 * 9 8 2 11 11 H 1.09003 * 109.47566 * 23.37626 * 10 9 8 12 12 C 1.50703 * 109.46994 * 143.37487 * 10 9 8 13 13 H 1.08003 * 120.00034 * 5.63292 * 12 10 9 14 14 C 1.37878 * 120.00137 * 185.63150 * 12 10 9 15 15 N 1.31511 * 119.99933 * 186.63650 * 14 12 10 16 16 Si 1.86797 * 120.00160 * 6.64072 * 14 12 10 17 17 H 1.48498 * 109.46992 * 270.00135 * 16 14 12 18 18 H 1.48506 * 109.47099 * 29.99515 * 16 14 12 19 19 H 1.48493 * 109.47312 * 149.99757 * 16 14 12 20 20 C 1.53001 * 109.47321 * 263.37210 * 10 9 8 21 21 Cl 1.80300 * 109.46970 * 65.52846 * 20 10 9 22 22 H 1.09008 * 109.47261 * 270.28248 * 1 2 3 23 23 H 1.09003 * 109.47635 * 30.28301 * 1 2 3 24 24 H 1.09000 * 109.47318 * 150.28223 * 1 2 3 25 25 H 1.07998 * 120.47333 * 179.97438 * 7 6 4 26 26 H 0.97007 * 120.00139 * 354.95997 * 15 14 12 27 27 H 1.08997 * 109.47453 * 185.52683 * 20 10 9 28 28 H 1.08996 * 109.47264 * 305.52572 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.1780 1.1403 0.0000 4 6 3.4968 1.1492 -0.0066 5 17 4.3301 2.6722 -0.0146 6 7 4.2005 0.0335 -0.0067 7 6 3.6020 -1.1462 -0.0007 8 6 2.2121 -1.1984 0.0059 9 8 1.5595 -2.3910 0.0123 10 6 2.3650 -3.5713 0.0055 11 1 3.3527 -3.3395 0.4043 12 6 1.7141 -4.6286 0.8596 13 1 0.7362 -4.4538 1.2836 14 6 2.3668 -5.8191 1.0997 15 7 1.7488 -6.7916 1.7336 16 14 4.1289 -6.0507 0.5248 17 1 4.1313 -6.6132 -0.8495 18 1 4.8257 -4.7393 0.5241 19 1 4.8306 -6.9835 1.4428 20 6 2.5021 -4.0871 -1.4284 21 17 3.4248 -2.8904 -2.4119 22 1 -0.3634 0.0051 1.0277 23 1 -0.3634 0.8874 -0.5182 24 1 -0.3634 -0.8925 -0.5094 25 1 4.1843 -2.0558 -0.0013 26 1 0.8608 -6.6468 2.0964 27 1 3.0327 -5.0391 -1.4229 28 1 1.5112 -4.2259 -1.8608 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231029552.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:10 Heat of formation + Delta-G solvation = -27.430097 kcal Electronic energy + Delta-G solvation = -17189.347299 eV Core-core repulsion = 14099.035192 eV Total energy + Delta-G solvation = -3090.312106 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 276.017 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.50422 -39.92920 -37.92115 -36.97733 -35.79135 -35.41705 -32.98482 -31.74733 -29.49605 -26.90370 -25.65084 -24.31075 -22.78512 -20.28184 -19.22951 -18.93555 -18.26146 -17.23701 -16.37450 -15.78342 -15.72690 -15.32634 -15.08336 -14.58707 -14.51981 -14.22737 -14.01003 -13.40624 -13.26898 -12.99566 -12.70815 -12.63203 -12.52349 -12.43414 -11.94901 -11.77033 -11.59770 -11.36809 -11.07135 -10.83528 -10.45472 -9.55073 -8.97274 -6.70213 -0.33692 -0.28767 0.30790 1.18461 1.37585 1.45454 1.56703 2.03855 2.29893 2.38259 2.79745 2.87322 3.06115 3.40797 3.70360 3.82640 4.02914 4.09965 4.37486 4.66529 4.67770 4.72986 4.80510 5.18975 5.26903 5.53212 5.80596 6.04562 6.43764 6.62801 7.10711 8.42827 Molecular weight = 276.02amu Principal moments of inertia in cm(-1) A = 0.023724 B = 0.006133 C = 0.005791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.931648 B = 4564.552129 C = 4833.786885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.153 3.847 3 N -0.478 5.478 4 C 0.301 3.699 5 Cl 0.033 6.967 6 N -0.485 5.485 7 C 0.082 3.918 8 C 0.042 3.958 9 O -0.284 6.284 10 C 0.182 3.818 11 H 0.052 0.948 12 C -0.606 4.606 13 H 0.043 0.957 14 C 0.001 3.999 15 N -0.914 5.914 16 Si 1.054 2.946 17 H -0.245 1.245 18 H -0.244 1.244 19 H -0.277 1.277 20 C -0.048 4.048 21 Cl -0.207 7.207 22 H 0.096 0.904 23 H 0.100 0.900 24 H 0.087 0.913 25 H 0.182 0.818 26 H 0.263 0.737 27 H 0.103 0.897 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.425 11.417 -5.560 12.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.005 3.995 3 N -0.197 5.197 4 C 0.008 3.992 5 Cl 0.060 6.940 6 N -0.203 5.203 7 C -0.084 4.084 8 C -0.010 4.010 9 O -0.194 6.194 10 C 0.126 3.874 11 H 0.069 0.931 12 C -0.643 4.643 13 H 0.061 0.939 14 C -0.201 4.201 15 N -0.547 5.547 16 Si 0.873 3.127 17 H -0.169 1.169 18 H -0.167 1.167 19 H -0.203 1.203 20 C -0.111 4.111 21 Cl -0.181 7.181 22 H 0.114 0.886 23 H 0.119 0.881 24 H 0.105 0.895 25 H 0.199 0.801 26 H 0.073 0.927 27 H 0.121 0.879 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.015 11.322 -5.714 13.303 hybrid contribution -1.588 0.069 0.370 1.632 sum 2.428 11.391 -5.344 12.814 Atomic orbital electron populations 1.20746 0.84367 1.04988 1.04790 1.21609 0.99189 0.83933 0.94800 1.67755 1.08084 1.29426 1.14398 1.22942 0.86467 0.89214 1.00591 1.98393 1.75940 1.23167 1.96476 1.67719 1.41500 0.97510 1.13606 1.23578 0.91722 0.96097 0.96954 1.20927 0.93317 0.89296 0.97498 1.86211 1.35796 1.11268 1.86140 1.20896 0.93037 0.81500 0.91972 0.93056 1.21983 1.05853 1.02321 1.34160 0.93906 1.27008 1.07742 0.90944 0.94387 1.70911 1.15816 1.32844 1.35176 0.83962 0.71232 0.78984 0.78519 1.16931 1.16730 1.20300 1.25898 0.99265 0.93351 0.92574 1.98688 1.78657 1.64842 1.75874 0.88586 0.88089 0.89451 0.80107 0.92679 0.87919 0.87437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.26 10.02 71.23 0.71 -1.55 15 2 C 0.15 4.87 6.84 42.68 0.29 5.17 15 3 N -0.48 -15.45 10.34 -178.56 -1.85 -17.29 15 4 C 0.30 9.85 8.17 180.82 1.48 11.32 15 5 Cl 0.03 0.87 29.27 -2.72 -0.08 0.79 15 6 N -0.49 -16.88 10.40 -190.39 -1.98 -18.86 15 7 C 0.08 2.90 8.54 84.83 0.72 3.63 15 8 C 0.04 1.48 6.09 22.67 0.14 1.62 15 9 O -0.28 -11.09 8.89 -93.01 -0.83 -11.92 15 10 C 0.18 7.44 1.74 29.85 0.05 7.50 15 11 H 0.05 2.07 3.84 -2.39 -0.01 2.06 15 12 C -0.61 -30.13 9.23 25.60 0.24 -29.89 15 13 H 0.04 2.39 8.05 -2.91 -0.02 2.37 15 14 C 0.00 0.07 5.42 84.66 0.46 0.53 15 15 N -0.91 -50.91 13.70 21.45 0.29 -50.62 15 16 Si 1.05 41.85 25.41 68.60 1.74 43.60 15 17 H -0.24 -8.65 6.76 99.48 0.67 -7.98 15 18 H -0.24 -8.53 6.35 99.48 0.63 -7.89 15 19 H -0.28 -11.27 7.11 99.48 0.71 -10.56 15 20 C -0.05 -1.73 5.94 71.98 0.43 -1.30 15 21 Cl -0.21 -6.77 25.99 -2.72 -0.07 -6.84 15 22 H 0.10 2.17 8.14 -2.38 -0.02 2.15 15 23 H 0.10 2.06 8.14 -2.39 -0.02 2.04 15 24 H 0.09 2.19 7.61 -2.39 -0.02 2.17 15 25 H 0.18 6.28 5.24 -2.91 -0.02 6.27 15 26 H 0.26 14.89 8.72 -92.70 -0.81 14.08 15 27 H 0.10 3.63 4.52 -2.39 -0.01 3.62 15 28 H 0.11 3.73 8.14 -2.39 -0.02 3.71 15 Total: -1.00 -54.93 268.61 2.82 -52.11 By element: Atomic # 1 Polarization: 10.97 SS G_CDS: 1.07 Total: 12.04 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 4.52 Total: -2.99 kcal Atomic # 7 Polarization: -83.24 SS G_CDS: -3.53 Total: -86.78 kcal Atomic # 8 Polarization: -11.09 SS G_CDS: -0.83 Total: -11.92 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.74 Total: 43.60 kcal Atomic # 17 Polarization: -5.90 SS G_CDS: -0.15 Total: -6.05 kcal Total: -54.93 2.82 -52.11 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231029552.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.675 kcal (2) G-P(sol) polarization free energy of solvation -54.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds