Wall clock time and date at job start Mon Mar 30 2020 01:28:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 N 1.46900 * 109.47324 * 182.23042 * 3 2 1 5 5 C 1.46900 * 110.99807 * 299.25152 * 4 3 2 6 6 C 1.50702 * 109.46878 * 288.76136 * 5 4 3 7 7 H 1.08000 * 120.00282 * 1.48817 * 6 5 4 8 8 C 1.37881 * 119.99629 * 181.48674 * 6 5 4 9 9 N 1.31512 * 119.99675 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99946 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47313 * 89.99904 * 10 8 6 12 12 H 1.48503 * 109.47185 * 209.99652 * 10 8 6 13 13 H 1.48501 * 109.47517 * 329.99896 * 10 8 6 14 14 C 1.46904 * 110.99576 * 63.20411 * 4 3 2 15 15 C 1.50700 * 109.46865 * 66.04970 * 14 4 3 16 16 C 1.38257 * 119.99768 * 259.71915 * 15 14 4 17 17 C 1.38214 * 120.00262 * 179.74692 * 16 15 14 18 18 C 1.50700 * 120.00165 * 180.27451 * 17 16 15 19 19 C 1.38255 * 119.99464 * 0.55450 * 17 16 15 20 20 C 1.50700 * 119.99994 * 179.72297 * 19 17 16 21 21 C 1.38215 * 120.00411 * 359.69843 * 19 17 16 22 22 C 1.38213 * 120.00276 * 79.99931 * 15 14 4 23 23 C 1.50698 * 119.99810 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.46959 * 299.99682 * 1 2 3 25 25 H 1.08994 * 109.47131 * 59.99893 * 1 2 3 26 26 H 1.08994 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46959 * 240.00318 * 2 1 3 28 28 H 1.08997 * 109.47625 * 119.99988 * 2 1 3 29 29 H 1.08998 * 109.46885 * 62.22933 * 3 2 1 30 30 H 1.09002 * 109.46965 * 302.23099 * 3 2 1 31 31 H 1.08996 * 109.46906 * 48.76441 * 5 4 3 32 32 H 1.09000 * 109.46637 * 168.76128 * 5 4 3 33 33 H 0.97002 * 119.99608 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46678 * 186.04231 * 14 4 3 35 35 H 1.08998 * 109.47362 * 306.04433 * 14 4 3 36 36 H 1.08005 * 119.99759 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.47251 * 270.27793 * 18 17 16 38 38 H 1.08993 * 109.46955 * 30.28291 * 18 17 16 39 39 H 1.09005 * 109.46485 * 150.27766 * 18 17 16 40 40 H 1.08996 * 109.47139 * 269.97742 * 20 19 17 41 41 H 1.09002 * 109.46987 * 29.97533 * 20 19 17 42 42 H 1.09004 * 109.47416 * 149.97297 * 20 19 17 43 43 H 1.08000 * 120.00401 * 179.97438 * 21 19 17 44 44 H 1.08997 * 109.47500 * 90.00308 * 23 22 15 45 45 H 1.09003 * 109.46804 * 210.00425 * 23 22 15 46 46 H 1.09001 * 109.47269 * 329.99483 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4429 -0.0539 5 6 4.0778 0.7574 1.1138 6 6 3.8759 1.6063 2.3425 7 1 3.3533 2.5484 2.2681 8 6 4.3584 1.1799 3.5617 9 7 4.1818 1.9204 4.6341 10 14 5.2630 -0.4494 3.6903 11 1 6.7152 -0.2279 3.4729 12 1 5.0475 -1.0301 5.0399 13 1 4.7455 -1.3856 2.6602 14 6 3.9890 0.8407 -1.3045 15 6 3.5873 1.7105 -2.4678 16 6 2.4880 1.3735 -3.2356 17 6 2.1164 2.1740 -4.2993 18 6 0.9144 1.8100 -5.1324 19 6 2.8508 3.3054 -4.6026 20 6 2.4494 4.1748 -5.7662 21 6 3.9529 3.6394 -3.8382 22 6 4.3212 2.8418 -2.7707 23 6 5.5228 3.2059 -1.9373 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7097 1.9447 0.9093 30 1 1.6444 1.9678 -0.8693 31 1 3.5805 -0.2029 1.2497 32 1 5.1440 0.5953 0.9553 33 1 4.5216 1.6206 5.4918 34 1 5.0753 0.7557 -1.2726 35 1 3.5503 -0.1500 -1.4230 36 1 1.9174 0.4868 -3.0019 37 1 1.2243 1.1663 -5.9556 38 1 0.1888 1.2835 -4.5126 39 1 0.4609 2.7174 -5.5315 40 1 2.9525 3.8287 -6.6689 41 1 1.3700 4.1176 -5.9072 42 1 2.7351 5.2072 -5.5640 43 1 4.5268 4.5230 -4.0754 44 1 6.4125 2.7379 -2.3586 45 1 5.6484 4.2887 -1.9346 46 1 5.3765 2.8546 -0.9159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001231484221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:33 Heat of formation + Delta-G solvation = 7.934114 kcal Electronic energy + Delta-G solvation = -22043.805386 eV Core-core repulsion = 19125.508761 eV Total energy + Delta-G solvation = -2918.296625 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.82488 -37.45982 -34.31012 -32.78799 -32.39060 -31.69027 -29.23238 -28.59639 -27.10309 -25.65353 -24.51915 -23.04280 -22.06673 -21.72944 -19.69714 -18.62919 -16.71121 -16.08047 -15.30396 -15.14753 -14.68697 -14.58634 -14.19950 -14.05163 -13.75045 -13.26638 -13.02511 -12.86007 -12.73810 -12.66265 -12.48718 -12.38658 -11.95561 -11.74117 -11.60960 -11.42974 -11.31935 -11.14320 -11.07986 -10.80897 -10.77250 -10.61823 -10.49303 -10.23949 -9.83644 -9.80190 -9.27011 -8.54115 -8.42425 -8.03829 -7.23933 -6.02611 -3.98844 1.57621 1.62930 3.28577 3.36462 3.37732 3.88839 4.43333 4.86363 4.90018 5.00971 5.12262 5.13960 5.26405 5.30434 5.38389 5.46777 5.47805 5.49395 5.64209 5.70309 5.73953 5.79587 5.81415 5.81736 5.95029 5.98446 6.01819 6.04589 6.09576 6.25414 6.30667 6.33878 6.43176 6.48249 6.55174 6.66095 6.73124 6.82128 6.85418 6.97577 7.05518 7.08613 7.30119 7.64225 7.94432 8.08358 8.69466 9.07867 9.59554 11.10755 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.005017 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.430758 B = 5579.622387 C = 6313.751491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.164 4.164 3 C 0.066 3.934 4 N -0.516 5.516 5 C 0.157 3.843 6 C -0.502 4.502 7 H 0.080 0.920 8 C 0.068 3.932 9 N -0.901 5.901 10 Si 0.872 3.128 11 H -0.276 1.276 12 H -0.287 1.287 13 H -0.269 1.269 14 C 0.083 3.917 15 C -0.066 4.066 16 C -0.108 4.108 17 C -0.100 4.100 18 C -0.112 4.112 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.122 4.122 22 C -0.059 4.059 23 C -0.123 4.123 24 H 0.055 0.945 25 H 0.047 0.953 26 H 0.045 0.955 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.082 0.918 30 H 0.058 0.942 31 H -0.003 1.003 32 H 0.020 0.980 33 H 0.263 0.737 34 H 0.076 0.924 35 H 0.035 0.965 36 H 0.115 0.885 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.116 0.884 44 H 0.060 0.940 45 H 0.059 0.941 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.908 -0.546 -19.152 19.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.203 4.203 3 C -0.063 4.063 4 N -0.238 5.238 5 C 0.031 3.969 6 C -0.540 4.540 7 H 0.098 0.902 8 C -0.133 4.133 9 N -0.541 5.541 10 Si 0.699 3.301 11 H -0.202 1.202 12 H -0.213 1.213 13 H -0.193 1.193 14 C -0.044 4.044 15 C -0.066 4.066 16 C -0.126 4.126 17 C -0.100 4.100 18 C -0.169 4.169 19 C -0.094 4.094 20 C -0.169 4.169 21 C -0.140 4.140 22 C -0.060 4.060 23 C -0.179 4.179 24 H 0.074 0.926 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.014 0.986 32 H 0.038 0.962 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.053 0.947 36 H 0.133 0.867 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.134 0.866 44 H 0.079 0.921 45 H 0.078 0.922 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.689 -0.047 -18.919 19.276 hybrid contribution 0.273 -1.742 0.261 1.782 sum -3.416 -1.789 -18.659 19.053 Atomic orbital electron populations 1.21644 0.96251 1.00674 1.01486 1.22186 0.95835 1.00511 1.01753 1.22074 0.87810 0.94279 1.02092 1.62205 1.06943 1.54051 1.00577 1.20272 0.94090 0.93526 0.89040 1.21006 1.36484 1.06759 0.89798 0.90193 1.24877 0.95939 0.96704 0.95757 1.69894 1.46923 1.37848 0.99393 0.86922 0.80709 0.85009 0.77456 1.20216 1.21301 1.19344 1.21106 1.00172 0.94108 0.89055 1.19725 0.95051 0.95879 0.95986 1.20876 0.96918 0.99541 0.95292 1.19591 0.97627 0.95535 0.97258 1.20791 0.95439 1.01595 0.99055 1.19618 0.96057 0.96001 0.97704 1.20801 1.01594 0.98568 0.95966 1.20849 0.97277 1.00024 0.95894 1.19748 0.97164 0.94014 0.95060 1.20905 0.94269 1.01236 1.01491 0.92558 0.93379 0.93630 0.93008 0.91063 0.89924 0.92327 0.98587 0.96192 0.92756 0.90614 0.94741 0.86667 0.91726 0.91925 0.91526 0.91680 0.91499 0.91939 0.86586 0.92143 0.92220 0.88640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.91 37.16 0.37 -1.69 16 2 C -0.16 -2.79 5.29 -26.73 -0.14 -2.93 16 3 C 0.07 1.25 4.96 -3.82 -0.02 1.24 16 4 N -0.52 -10.52 3.99 -237.51 -0.95 -11.47 16 5 C 0.16 3.70 3.63 -4.97 -0.02 3.68 16 6 C -0.50 -14.04 9.15 -34.44 -0.32 -14.35 16 7 H 0.08 2.46 7.65 -52.49 -0.40 2.06 16 8 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 9 N -0.90 -27.51 13.96 55.43 0.77 -26.73 16 10 Si 0.87 21.36 27.44 -169.99 -4.66 16.70 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.27 -6.34 6.59 56.52 0.37 -5.97 16 14 C 0.08 1.44 4.03 -4.97 -0.02 1.42 16 15 C -0.07 -1.05 4.57 -104.62 -0.48 -1.53 16 16 C -0.11 -1.55 8.32 -39.58 -0.33 -1.88 16 17 C -0.10 -1.30 5.88 -104.62 -0.62 -1.92 16 18 C -0.11 -1.12 9.60 36.01 0.35 -0.77 16 19 C -0.09 -1.20 5.88 -104.62 -0.62 -1.81 16 20 C -0.11 -1.08 9.61 36.01 0.35 -0.73 16 21 C -0.12 -1.68 9.36 -39.58 -0.37 -2.06 16 22 C -0.06 -0.92 5.88 -104.62 -0.62 -1.53 16 23 C -0.12 -1.84 9.26 36.00 0.33 -1.50 16 24 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 25 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 26 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.82 6.01 -51.93 -0.31 0.51 16 28 H 0.07 1.38 6.31 -51.93 -0.33 1.05 16 29 H 0.08 1.79 7.18 -51.93 -0.37 1.41 16 30 H 0.06 1.06 6.47 -51.93 -0.34 0.72 16 31 H 0.00 -0.08 5.02 -51.93 -0.26 -0.34 16 32 H 0.02 0.47 7.17 -51.93 -0.37 0.10 16 33 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 34 H 0.08 1.30 7.01 -51.93 -0.36 0.93 16 35 H 0.03 0.58 5.92 -51.93 -0.31 0.27 16 36 H 0.12 1.56 7.80 -52.48 -0.41 1.15 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 39 H 0.07 0.58 5.95 -51.93 -0.31 0.27 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.57 5.95 -51.93 -0.31 0.26 16 42 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.06 0.82 8.09 -51.93 -0.42 0.40 16 46 H 0.09 1.70 6.35 -51.93 -0.33 1.37 16 LS Contribution 351.24 15.07 5.29 5.29 Total: -1.00 -29.88 351.24 -9.58 -39.46 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.79 Total: 1.23 kcal Atomic # 6 Polarization: -22.25 SS G_CDS: -2.24 Total: -24.49 kcal Atomic # 7 Polarization: -38.02 SS G_CDS: -0.17 Total: -38.20 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -4.66 Total: 16.70 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -29.88 -9.58 -39.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231484221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.399 kcal (2) G-P(sol) polarization free energy of solvation -29.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.465 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds