Wall clock time and date at job start Mon Mar 30 2020 01:28:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47176 * 2 1 4 4 N 1.46900 * 109.47324 * 182.23042 * 3 2 1 5 5 C 1.46900 * 110.99807 * 299.25152 * 4 3 2 6 6 C 1.50702 * 109.46878 * 288.76136 * 5 4 3 7 7 H 1.08000 * 120.00282 * 1.48817 * 6 5 4 8 8 C 1.37881 * 119.99629 * 181.48674 * 6 5 4 9 9 N 1.31512 * 119.99675 * 180.02562 * 8 6 5 10 10 Si 1.86799 * 119.99946 * 0.02562 * 8 6 5 11 11 H 1.48504 * 109.47313 * 89.99904 * 10 8 6 12 12 H 1.48503 * 109.47185 * 209.99652 * 10 8 6 13 13 H 1.48501 * 109.47517 * 329.99896 * 10 8 6 14 14 C 1.46904 * 110.99576 * 63.20411 * 4 3 2 15 15 C 1.50700 * 109.46865 * 66.04970 * 14 4 3 16 16 C 1.38257 * 119.99768 * 259.71915 * 15 14 4 17 17 C 1.38214 * 120.00262 * 179.74692 * 16 15 14 18 18 C 1.50700 * 120.00165 * 180.27451 * 17 16 15 19 19 C 1.38255 * 119.99464 * 0.55450 * 17 16 15 20 20 C 1.50700 * 119.99994 * 179.72297 * 19 17 16 21 21 C 1.38215 * 120.00411 * 359.69843 * 19 17 16 22 22 C 1.38213 * 120.00276 * 79.99931 * 15 14 4 23 23 C 1.50698 * 119.99810 * 359.97438 * 22 15 14 24 24 H 1.09001 * 109.46959 * 299.99682 * 1 2 3 25 25 H 1.08994 * 109.47131 * 59.99893 * 1 2 3 26 26 H 1.08994 * 109.46858 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46959 * 240.00318 * 2 1 3 28 28 H 1.08997 * 109.47625 * 119.99988 * 2 1 3 29 29 H 1.08998 * 109.46885 * 62.22933 * 3 2 1 30 30 H 1.09002 * 109.46965 * 302.23099 * 3 2 1 31 31 H 1.08996 * 109.46906 * 48.76441 * 5 4 3 32 32 H 1.09000 * 109.46637 * 168.76128 * 5 4 3 33 33 H 0.97002 * 119.99608 * 180.02562 * 9 8 6 34 34 H 1.09006 * 109.46678 * 186.04231 * 14 4 3 35 35 H 1.08998 * 109.47362 * 306.04433 * 14 4 3 36 36 H 1.08005 * 119.99759 * 359.97438 * 16 15 14 37 37 H 1.09000 * 109.47251 * 270.27793 * 18 17 16 38 38 H 1.08993 * 109.46955 * 30.28291 * 18 17 16 39 39 H 1.09005 * 109.46485 * 150.27766 * 18 17 16 40 40 H 1.08996 * 109.47139 * 269.97742 * 20 19 17 41 41 H 1.09002 * 109.46987 * 29.97533 * 20 19 17 42 42 H 1.09004 * 109.47416 * 149.97297 * 20 19 17 43 43 H 1.08000 * 120.00401 * 179.97438 * 21 19 17 44 44 H 1.08997 * 109.47500 * 90.00308 * 23 22 15 45 45 H 1.09003 * 109.46804 * 210.00425 * 23 22 15 46 46 H 1.09001 * 109.47269 * 329.99483 * 23 22 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5080 1.4429 -0.0539 5 6 4.0778 0.7574 1.1138 6 6 3.8759 1.6063 2.3425 7 1 3.3533 2.5484 2.2681 8 6 4.3584 1.1799 3.5617 9 7 4.1818 1.9204 4.6341 10 14 5.2630 -0.4494 3.6903 11 1 6.7152 -0.2279 3.4729 12 1 5.0475 -1.0301 5.0399 13 1 4.7455 -1.3856 2.6602 14 6 3.9890 0.8407 -1.3045 15 6 3.5873 1.7105 -2.4678 16 6 2.4880 1.3735 -3.2356 17 6 2.1164 2.1740 -4.2993 18 6 0.9144 1.8100 -5.1324 19 6 2.8508 3.3054 -4.6026 20 6 2.4494 4.1748 -5.7662 21 6 3.9529 3.6394 -3.8382 22 6 4.3212 2.8418 -2.7707 23 6 5.5228 3.2059 -1.9373 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7097 1.9447 0.9093 30 1 1.6444 1.9678 -0.8693 31 1 3.5805 -0.2029 1.2497 32 1 5.1440 0.5953 0.9553 33 1 4.5216 1.6206 5.4918 34 1 5.0753 0.7557 -1.2726 35 1 3.5503 -0.1500 -1.4230 36 1 1.9174 0.4868 -3.0019 37 1 1.2243 1.1663 -5.9556 38 1 0.1888 1.2835 -4.5126 39 1 0.4609 2.7174 -5.5315 40 1 2.9525 3.8287 -6.6689 41 1 1.3700 4.1176 -5.9072 42 1 2.7351 5.2072 -5.5640 43 1 4.5268 4.5230 -4.0754 44 1 6.4125 2.7379 -2.3586 45 1 5.6484 4.2887 -1.9346 46 1 5.3765 2.8546 -0.9159 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231484221.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:32 Heat of formation + Delta-G solvation = -7.886144 kcal Electronic energy + Delta-G solvation = -22044.491403 eV Core-core repulsion = 19125.508761 eV Total energy + Delta-G solvation = -2918.982643 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.95430 -38.92409 -35.42455 -34.79276 -33.56122 -33.11831 -30.45216 -29.91566 -28.58858 -26.88421 -25.73874 -24.44321 -23.62410 -22.87050 -21.19267 -19.86955 -18.84823 -17.24109 -16.79643 -16.57699 -16.08370 -15.84042 -15.70463 -15.23303 -15.00856 -14.64651 -14.48524 -14.09521 -13.82342 -13.77799 -13.55724 -13.51769 -13.37809 -13.03033 -12.80785 -12.71271 -12.68024 -12.53308 -12.42663 -12.32129 -12.16250 -12.00534 -11.87173 -11.69677 -11.50070 -11.36678 -11.27607 -10.74608 -9.49696 -9.11954 -8.82957 -8.25844 -6.27549 0.49661 0.56298 1.34249 1.35158 1.45623 2.34951 2.78350 3.07719 3.45166 3.90578 3.92439 4.07184 4.08548 4.12840 4.15782 4.31630 4.39431 4.45536 4.55134 4.63976 4.67386 4.75421 4.76108 4.79165 4.80487 4.86006 4.90202 4.95856 4.97006 5.01496 5.07794 5.08868 5.13668 5.22553 5.26704 5.34771 5.41609 5.44732 5.55342 5.58539 5.63005 5.82867 5.91644 6.03168 6.25993 6.43176 6.69462 6.78199 7.35237 8.91213 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.021559 B = 0.005017 C = 0.004434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.430758 B = 5579.622387 C = 6313.751491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.156 4.156 3 C 0.074 3.926 4 N -0.530 5.530 5 C 0.169 3.831 6 C -0.505 4.505 7 H 0.033 0.967 8 C 0.009 3.991 9 N -0.950 5.950 10 Si 0.943 3.057 11 H -0.266 1.266 12 H -0.283 1.283 13 H -0.251 1.251 14 C 0.091 3.909 15 C -0.087 4.087 16 C -0.115 4.115 17 C -0.104 4.104 18 C -0.111 4.111 19 C -0.095 4.095 20 C -0.111 4.111 21 C -0.131 4.131 22 C -0.080 4.080 23 C -0.117 4.117 24 H 0.044 0.956 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.068 0.932 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.071 0.929 31 H -0.001 1.001 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.123 0.877 37 H 0.078 0.922 38 H 0.066 0.934 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.068 0.932 43 H 0.132 0.868 44 H 0.074 0.926 45 H 0.066 0.934 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.391 -1.828 -22.147 22.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.195 4.195 3 C -0.055 4.055 4 N -0.253 5.253 5 C 0.042 3.958 6 C -0.544 4.544 7 H 0.052 0.948 8 C -0.188 4.188 9 N -0.591 5.591 10 Si 0.766 3.234 11 H -0.191 1.191 12 H -0.209 1.209 13 H -0.175 1.175 14 C -0.037 4.037 15 C -0.087 4.087 16 C -0.133 4.133 17 C -0.104 4.104 18 C -0.167 4.167 19 C -0.095 4.095 20 C -0.168 4.168 21 C -0.148 4.148 22 C -0.080 4.080 23 C -0.174 4.174 24 H 0.063 0.937 25 H 0.084 0.916 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.089 0.911 31 H 0.016 0.984 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.061 0.939 36 H 0.141 0.859 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.087 0.913 43 H 0.149 0.851 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.181 -1.327 -21.944 22.379 hybrid contribution 0.368 -1.204 1.108 1.677 sum -3.814 -2.531 -20.837 21.333 Atomic orbital electron populations 1.21607 0.94022 1.02075 1.01826 1.22080 0.97801 0.98456 1.01157 1.21936 0.87246 0.95670 1.00614 1.62050 1.07716 1.54537 1.00961 1.19993 0.94354 0.92753 0.88678 1.21203 1.35525 1.05615 0.92043 0.94847 1.25783 0.96946 1.00883 0.95163 1.70055 1.48624 1.40270 1.00162 0.85782 0.79567 0.80094 0.77909 1.19085 1.20898 1.17487 1.21050 0.99957 0.94691 0.87964 1.19645 0.96483 0.96418 0.96177 1.21016 0.96470 1.00152 0.95677 1.19984 0.98431 0.95105 0.96901 1.20849 0.94172 1.02642 0.99036 1.20052 0.95213 0.96148 0.98133 1.20865 1.02610 0.98271 0.95017 1.21086 0.97939 1.00276 0.95546 1.19884 0.97492 0.94590 0.96043 1.20813 0.95180 1.01715 0.99655 0.93718 0.91576 0.91674 0.91316 0.93711 0.93747 0.91091 0.98351 0.95925 0.92580 0.90941 0.93897 0.85919 0.90330 0.91494 0.90060 0.90214 0.90155 0.91255 0.85051 0.90761 0.91475 0.91937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.75 9.91 71.98 0.71 -3.04 16 2 C -0.16 -5.22 5.29 30.60 0.16 -5.06 16 3 C 0.07 2.87 4.96 86.30 0.43 3.29 16 4 N -0.53 -22.17 3.99 -905.34 -3.61 -25.79 16 5 C 0.17 8.14 3.63 85.56 0.31 8.45 16 6 C -0.51 -29.57 9.15 25.60 0.23 -29.33 16 7 H 0.03 2.21 7.65 -2.91 -0.02 2.18 16 8 C 0.01 0.53 5.47 84.66 0.46 1.00 16 9 N -0.95 -60.16 13.96 21.45 0.30 -59.87 16 10 Si 0.94 44.49 27.44 68.60 1.88 46.37 16 11 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 H -0.25 -11.05 6.59 99.48 0.66 -10.40 16 14 C 0.09 3.11 4.03 85.56 0.34 3.46 16 15 C -0.09 -2.70 4.57 -19.87 -0.09 -2.79 16 16 C -0.11 -3.09 8.32 22.27 0.19 -2.91 16 17 C -0.10 -2.42 5.88 -19.87 -0.12 -2.54 16 18 C -0.11 -1.80 9.60 71.24 0.68 -1.11 16 19 C -0.10 -2.18 5.88 -19.87 -0.12 -2.30 16 20 C -0.11 -1.73 9.61 71.24 0.68 -1.05 16 21 C -0.13 -3.38 9.36 22.27 0.21 -3.17 16 22 C -0.08 -2.41 5.88 -19.87 -0.12 -2.53 16 23 C -0.12 -3.54 9.26 71.24 0.66 -2.88 16 24 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 2.06 6.01 -2.39 -0.01 2.05 16 28 H 0.04 1.73 6.31 -2.39 -0.02 1.72 16 29 H 0.04 2.04 7.18 -2.39 -0.02 2.02 16 30 H 0.07 2.57 6.47 -2.39 -0.02 2.55 16 31 H 0.00 -0.05 5.02 -2.39 -0.01 -0.06 16 32 H 0.02 1.08 7.17 -2.39 -0.02 1.06 16 33 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 34 H 0.07 2.49 7.01 -2.38 -0.02 2.47 16 35 H 0.04 1.39 5.92 -2.39 -0.01 1.37 16 36 H 0.12 3.03 7.80 -2.91 -0.02 3.01 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 1.04 8.09 -2.39 -0.02 1.02 16 39 H 0.08 1.08 5.95 -2.38 -0.01 1.07 16 40 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.08 1.04 5.95 -2.39 -0.01 1.03 16 42 H 0.07 1.00 8.09 -2.38 -0.02 0.98 16 43 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.07 1.85 8.09 -2.39 -0.02 1.84 16 46 H 0.06 2.30 6.35 -2.39 -0.02 2.29 16 Total: -1.00 -67.29 351.24 4.09 -63.20 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: 0.89 Total: 18.59 kcal Atomic # 6 Polarization: -47.14 SS G_CDS: 4.64 Total: -42.50 kcal Atomic # 7 Polarization: -82.34 SS G_CDS: -3.32 Total: -85.65 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 1.88 Total: 46.37 kcal Total: -67.29 4.09 -63.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231484221.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.315 kcal (2) G-P(sol) polarization free energy of solvation -67.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds