Wall clock time and date at job start Mon Mar 30 2020 01:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.46773 * 2 1 4 4 N 1.46901 * 109.46977 * 183.36350 * 3 2 1 5 5 C 1.46898 * 111.00131 * 304.34026 * 4 3 2 6 6 C 1.50698 * 109.47010 * 293.95027 * 5 4 3 7 7 H 1.08008 * 120.00017 * 0.02562 * 6 5 4 8 8 C 1.37875 * 120.00424 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99608 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 120.00573 * 180.02562 * 8 6 5 11 11 H 1.48496 * 109.47232 * 89.99088 * 10 8 6 12 12 H 1.48496 * 109.47316 * 209.99702 * 10 8 6 13 13 H 1.48507 * 109.46657 * 329.99784 * 10 8 6 14 14 C 1.46900 * 110.99995 * 68.29189 * 4 3 2 15 15 C 1.50704 * 109.47412 * 75.40688 * 14 4 3 16 16 C 1.38249 * 120.00240 * 256.43589 * 15 14 4 17 17 C 1.38214 * 120.00148 * 179.97438 * 16 15 14 18 18 C 1.38254 * 119.99767 * 0.02816 * 17 16 15 19 19 C 1.38209 * 120.00423 * 359.96942 * 18 17 16 20 20 C 1.38218 * 119.99610 * 76.15990 * 15 14 4 21 21 C 1.50697 * 119.99931 * 359.97438 * 20 15 14 22 22 C 1.52998 * 109.47117 * 120.00392 * 21 20 15 23 23 C 1.53002 * 109.47122 * 239.99840 * 21 20 15 24 24 H 1.09001 * 109.47083 * 299.99870 * 1 2 3 25 25 H 1.08997 * 109.46944 * 60.00199 * 1 2 3 26 26 H 1.09004 * 109.46852 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47083 * 240.00130 * 2 1 3 28 28 H 1.08993 * 109.46935 * 120.00316 * 2 1 3 29 29 H 1.08999 * 109.47235 * 63.37059 * 3 2 1 30 30 H 1.08998 * 109.47483 * 303.36503 * 3 2 1 31 31 H 1.08994 * 109.47520 * 53.95081 * 5 4 3 32 32 H 1.08998 * 109.47338 * 173.95285 * 5 4 3 33 33 H 0.97005 * 120.00064 * 180.02562 * 9 8 6 34 34 H 1.08998 * 109.47769 * 195.41017 * 14 4 3 35 35 H 1.09001 * 109.47148 * 315.41070 * 14 4 3 36 36 H 1.07997 * 119.99951 * 359.97438 * 16 15 14 37 37 H 1.08001 * 120.00091 * 179.97438 * 17 16 15 38 38 H 1.08007 * 119.99786 * 179.97438 * 18 17 16 39 39 H 1.08001 * 120.00650 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.47646 * 359.97438 * 21 20 15 41 41 H 1.09001 * 109.47226 * 59.99298 * 22 21 20 42 42 H 1.08998 * 109.47390 * 179.97438 * 22 21 20 43 43 H 1.09005 * 109.46908 * 299.99582 * 22 21 20 44 44 H 1.09002 * 109.47149 * 60.00205 * 23 21 20 45 45 H 1.08998 * 109.47047 * 180.02562 * 23 21 20 46 46 H 1.09001 * 109.47457 * 300.00399 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5067 1.4433 -0.0813 5 6 4.0946 0.6480 1.0049 6 6 3.8085 1.3135 2.3264 7 1 3.2457 2.2349 2.3564 8 6 4.2650 0.7462 3.4972 9 7 4.9498 -0.3760 3.4607 10 14 3.9097 1.5706 5.1353 11 1 2.6262 1.0587 5.6790 12 1 5.0069 1.2692 6.0895 13 1 3.8134 3.0396 4.9395 14 6 3.9616 0.9614 -1.3923 15 6 3.7494 2.0384 -2.4248 16 6 2.6934 1.9467 -3.3124 17 6 2.4985 2.9348 -4.2590 18 6 3.3599 4.0145 -4.3186 19 6 4.4156 4.1063 -3.4313 20 6 4.6072 3.1208 -2.4807 21 6 5.7542 3.2241 -1.5088 22 6 7.0748 3.2610 -2.2805 23 6 5.6098 4.5044 -0.6837 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 1.7268 1.9386 0.9186 30 1 1.6282 1.9734 -0.8583 31 1 3.6599 -0.3515 0.9998 32 1 5.1726 0.5761 0.8602 33 1 5.2707 -0.7754 4.2844 34 1 5.0214 0.7119 -1.3401 35 1 3.3928 0.0742 -1.6706 36 1 2.0208 1.1031 -3.2661 37 1 1.6738 2.8630 -4.9526 38 1 3.2078 4.7864 -5.0586 39 1 5.0888 4.9495 -3.4781 40 1 5.7457 2.3607 -0.8435 41 1 7.0830 4.1246 -2.9455 42 1 7.9045 3.3361 -1.5775 43 1 7.1777 2.3488 -2.8683 44 1 4.6690 4.4782 -0.1339 45 1 6.4397 4.5794 0.0190 46 1 5.6181 5.3681 -1.3486 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001231875993.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:28:34 Heat of formation + Delta-G solvation = -7.561773 kcal Electronic energy + Delta-G solvation = -22348.951073 eV Core-core repulsion = 19429.982496 eV Total energy + Delta-G solvation = -2918.968577 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.84877 -38.68363 -36.13946 -34.82395 -33.86044 -32.19590 -30.54896 -28.96747 -27.89785 -27.44353 -25.54818 -24.21151 -23.73569 -22.39868 -21.03162 -20.29195 -18.36403 -17.41411 -16.90945 -16.70943 -16.30386 -15.80383 -15.60362 -15.20780 -14.81778 -14.72746 -14.45387 -14.24174 -14.20046 -13.79583 -13.27275 -13.23502 -12.99911 -12.87226 -12.82664 -12.64175 -12.61430 -12.48998 -12.37085 -12.24486 -12.06268 -11.92629 -11.77816 -11.40510 -11.31946 -11.30025 -11.03872 -10.57257 -9.58978 -9.35907 -8.81544 -8.16482 -6.24537 0.58388 0.63035 1.39706 1.40490 1.51793 2.41202 2.93832 3.16215 3.53521 3.87305 3.98962 4.06156 4.16020 4.17710 4.26409 4.39184 4.44115 4.45701 4.50281 4.59338 4.64652 4.74120 4.77234 4.83675 4.85971 4.90284 5.03669 5.05100 5.05782 5.12652 5.18847 5.23152 5.27737 5.33916 5.36560 5.44687 5.49277 5.50852 5.54778 5.70724 5.73331 5.74411 5.99331 6.11961 6.26866 6.43408 6.70605 6.91612 7.44218 8.93962 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.015854 B = 0.006152 C = 0.004934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.665134 B = 4550.192986 C = 5672.987873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.154 4.154 3 C 0.075 3.925 4 N -0.527 5.527 5 C 0.209 3.791 6 C -0.509 4.509 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.959 3.041 11 H -0.274 1.274 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.091 3.909 15 C -0.083 4.083 16 C -0.122 4.122 17 C -0.130 4.130 18 C -0.123 4.123 19 C -0.125 4.125 20 C -0.060 4.060 21 C -0.062 4.062 22 C -0.135 4.135 23 C -0.126 4.126 24 H 0.049 0.951 25 H 0.067 0.933 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.072 0.928 31 H -0.023 1.023 32 H -0.005 1.005 33 H 0.262 0.738 34 H 0.059 0.941 35 H 0.038 0.962 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.134 0.866 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.056 0.944 43 H 0.048 0.952 44 H 0.037 0.963 45 H 0.050 0.950 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.715 7.493 -15.348 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C -0.053 4.053 4 N -0.249 5.249 5 C 0.083 3.917 6 C -0.547 4.547 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.785 3.215 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.192 1.192 14 C -0.037 4.037 15 C -0.084 4.084 16 C -0.140 4.140 17 C -0.148 4.148 18 C -0.141 4.141 19 C -0.142 4.142 20 C -0.061 4.061 21 C -0.080 4.080 22 C -0.193 4.193 23 C -0.184 4.184 24 H 0.068 0.932 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.090 0.910 31 H -0.006 1.006 32 H 0.013 0.987 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.056 0.944 36 H 0.140 0.860 37 H 0.160 0.840 38 H 0.163 0.837 39 H 0.152 0.848 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.442 7.859 -15.165 17.424 hybrid contribution -0.109 -1.090 1.312 1.709 sum -3.550 6.770 -13.853 15.822 Atomic orbital electron populations 1.21605 0.93850 1.01822 1.02039 1.22027 0.97716 0.99019 1.00547 1.21947 0.87382 0.95094 1.00894 1.62238 1.07682 1.53872 1.01130 1.19395 0.92599 0.90717 0.88979 1.21364 1.33673 1.08281 0.91394 0.92519 1.25780 0.95163 0.95586 1.02784 1.70080 1.38570 1.20235 1.28616 0.85532 0.77777 0.79050 0.79183 1.20016 1.20889 1.19173 1.20979 0.99498 0.94181 0.89002 1.19740 0.96268 0.96214 0.96166 1.21154 0.97017 0.99956 0.95897 1.21322 1.00311 0.94287 0.98843 1.21393 0.94757 0.98616 0.99321 1.21154 0.98997 0.98689 0.95394 1.19772 0.96244 0.94057 0.95988 1.20106 0.93103 0.99427 0.95413 1.21805 0.95543 1.02005 0.99909 1.21644 1.00995 0.96483 0.99248 0.93155 0.91359 0.92358 0.92579 0.94288 0.92766 0.90981 1.00579 0.98670 0.92924 0.92293 0.94419 0.86034 0.83997 0.83723 0.84819 0.92196 0.91082 0.92465 0.93288 0.94422 0.93109 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.15 -5.62 5.20 30.59 0.16 -5.46 16 3 C 0.08 2.92 5.00 86.30 0.43 3.35 16 4 N -0.53 -22.67 4.23 -905.40 -3.83 -26.51 16 5 C 0.21 11.06 4.37 85.56 0.37 11.43 16 6 C -0.51 -28.80 8.57 25.60 0.22 -28.58 16 7 H 0.06 3.20 7.10 -2.91 -0.02 3.18 16 8 C 0.00 0.26 5.46 84.65 0.46 0.72 16 9 N -0.93 -56.44 13.29 21.45 0.28 -56.15 16 10 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 14 C 0.09 3.39 4.11 85.56 0.35 3.74 16 15 C -0.08 -2.66 4.84 -19.87 -0.10 -2.76 16 16 C -0.12 -3.28 8.93 22.27 0.20 -3.08 16 17 C -0.13 -2.87 10.05 22.27 0.22 -2.65 16 18 C -0.12 -2.61 10.05 22.27 0.22 -2.39 16 19 C -0.12 -3.05 8.71 22.27 0.19 -2.85 16 20 C -0.06 -1.81 4.78 -19.86 -0.09 -1.90 16 21 C -0.06 -1.96 2.87 -11.54 -0.03 -1.99 16 22 C -0.14 -3.45 9.00 71.98 0.65 -2.81 16 23 C -0.13 -3.87 9.01 71.98 0.65 -3.22 16 24 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 26 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 27 H 0.06 1.94 6.26 -2.39 -0.01 1.93 16 28 H 0.04 1.73 6.41 -2.39 -0.02 1.71 16 29 H 0.05 2.33 6.98 -2.39 -0.02 2.32 16 30 H 0.07 2.51 6.84 -2.39 -0.02 2.49 16 31 H -0.02 -1.32 5.97 -2.39 -0.01 -1.34 16 32 H 0.00 -0.28 7.83 -2.39 -0.02 -0.30 16 33 H 0.26 14.97 8.31 -92.70 -0.77 14.20 16 34 H 0.06 2.34 6.53 -2.39 -0.02 2.33 16 35 H 0.04 1.36 5.86 -2.39 -0.01 1.35 16 36 H 0.12 3.01 8.01 -2.91 -0.02 2.99 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.29 16 38 H 0.15 2.17 8.06 -2.91 -0.02 2.14 16 39 H 0.13 2.72 7.10 -2.91 -0.02 2.69 16 40 H 0.06 2.35 5.50 -2.39 -0.01 2.33 16 41 H 0.07 1.50 7.38 -2.39 -0.02 1.48 16 42 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 43 H 0.05 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 45 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.69 7.40 -2.39 -0.02 1.67 16 Total: -1.00 -63.32 355.84 4.03 -59.29 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.93 Total: 18.03 kcal Atomic # 6 Polarization: -46.22 SS G_CDS: 4.62 Total: -41.59 kcal Atomic # 7 Polarization: -79.11 SS G_CDS: -3.55 Total: -82.66 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -63.32 4.03 -59.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001231875993.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.728 kcal (2) G-P(sol) polarization free energy of solvation -63.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds