Wall clock time and date at job start Mon Mar 30 2020 01:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47358 * 2 1 4 4 N 1.46899 * 109.47326 * 186.58402 * 3 2 1 5 5 C 1.46900 * 111.00183 * 170.62580 * 4 3 2 6 6 C 1.50698 * 109.47010 * 196.92477 * 5 4 3 7 7 C 1.37640 * 120.12532 * 255.20503 * 6 5 4 8 8 C 1.38618 * 120.24662 * 180.32344 * 7 6 5 9 9 C 1.38659 * 120.49727 * 359.67082 * 8 7 6 10 10 C 1.37600 * 120.25152 * 0.02562 * 9 8 7 11 11 C 1.40697 * 120.13034 * 74.90353 * 6 5 4 12 12 C 1.41403 * 120.24138 * 359.97438 * 11 6 5 13 13 H 1.08005 * 119.99544 * 334.11566 * 12 11 6 14 14 C 1.39946 * 119.99971 * 154.12438 * 12 11 6 15 15 N 1.30819 * 119.99867 * 334.42297 * 14 12 11 16 16 Si 1.86795 * 119.99836 * 154.42996 * 14 12 11 17 17 H 1.48505 * 109.46896 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.47192 * 299.99479 * 16 14 12 19 19 H 1.48501 * 109.47394 * 60.00002 * 16 14 12 20 20 C 1.46902 * 110.99976 * 294.57762 * 4 3 2 21 21 H 1.09000 * 109.47557 * 207.50823 * 20 4 3 22 22 C 1.53003 * 109.46958 * 327.51025 * 20 4 3 23 23 C 1.53002 * 109.47158 * 87.50652 * 20 4 3 24 24 C 1.53007 * 109.46821 * 66.24861 * 23 20 4 25 25 H 1.08998 * 109.47129 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47204 * 300.00181 * 1 2 3 27 27 H 1.09002 * 109.46944 * 59.99906 * 1 2 3 28 28 H 1.09000 * 109.47204 * 239.99819 * 2 1 3 29 29 H 1.09002 * 109.46944 * 120.00094 * 2 1 3 30 30 H 1.09001 * 109.46842 * 66.58379 * 3 2 1 31 31 H 1.08995 * 109.47481 * 306.58568 * 3 2 1 32 32 H 1.08997 * 109.47064 * 76.91854 * 5 4 3 33 33 H 1.09002 * 109.46608 * 316.92156 * 5 4 3 34 34 H 1.07999 * 119.88093 * 0.02562 * 7 6 5 35 35 H 1.07994 * 119.75334 * 179.69685 * 8 7 6 36 36 H 1.08005 * 119.87194 * 180.02562 * 9 8 7 37 37 H 1.07994 * 120.12584 * 180.02562 * 10 9 8 38 38 H 0.97001 * 120.00094 * 353.65298 * 15 14 12 39 39 H 1.08994 * 109.47276 * 66.18907 * 22 20 4 40 40 H 1.09006 * 109.46751 * 186.18458 * 22 20 4 41 41 H 1.08994 * 109.47297 * 306.17828 * 22 20 4 42 42 H 1.08997 * 109.47178 * 186.24407 * 23 20 4 43 43 H 1.08997 * 109.47478 * 306.25338 * 23 20 4 44 44 H 1.09002 * 109.47023 * 304.84385 * 24 23 20 45 45 H 1.09002 * 109.46876 * 64.83839 * 24 23 20 46 46 H 1.09000 * 109.47213 * 184.84058 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 3.5004 1.4455 -0.1588 5 6 4.0025 2.8072 -0.3859 6 6 5.3990 2.7404 -0.9483 7 6 6.4805 3.0326 -0.1485 8 6 7.7657 2.9785 -0.6650 9 6 7.9779 2.6235 -1.9885 10 6 6.9120 2.3212 -2.8046 11 6 5.6029 2.3729 -2.2910 12 6 4.4999 2.0638 -3.1201 13 1 3.5811 1.7010 -2.6834 14 6 4.5988 2.2279 -4.5064 15 7 5.4461 3.0916 -5.0039 16 14 3.5210 1.2139 -5.6462 17 1 3.8157 1.5741 -7.0564 18 1 3.7981 -0.2297 -5.4352 19 1 2.0919 1.4917 -5.3532 20 6 4.1574 0.8289 1.0015 21 1 5.1563 1.2490 1.1192 22 6 3.3350 1.1079 2.2611 23 6 4.2619 -0.6821 0.7850 24 6 5.2108 -0.9658 -0.3814 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.7761 1.9211 0.9431 31 1 1.5838 1.9892 -0.8251 32 1 4.0166 3.3514 0.5584 33 1 3.3507 3.3216 -1.0920 34 1 6.3269 3.3098 0.8839 35 1 8.6081 3.2141 -0.0317 36 1 8.9836 2.5841 -2.3803 37 1 7.0796 2.0446 -3.8349 38 1 5.9390 3.6828 -4.4136 39 1 2.3759 0.5951 2.1898 40 1 3.8761 0.7465 3.1357 41 1 3.1674 2.1808 2.3554 42 1 4.6472 -1.1529 1.6894 43 1 3.2754 -1.0857 0.5572 44 1 4.8722 -0.4247 -1.2650 45 1 6.2170 -0.6393 -0.1188 46 1 5.2190 -2.0354 -0.5912 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511043.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:31 Heat of formation + Delta-G solvation = -3.808757 kcal Electronic energy + Delta-G solvation = -22941.607683 eV Core-core repulsion = 20022.801849 eV Total energy + Delta-G solvation = -2918.805834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.53178 -39.05580 -35.65265 -34.43953 -34.23013 -31.77489 -31.00827 -30.10087 -27.55306 -26.55453 -25.49876 -24.19438 -22.75304 -22.01255 -21.53135 -20.43211 -19.41673 -17.34841 -16.70147 -16.31320 -16.07534 -15.92179 -15.55266 -15.19765 -14.87414 -14.51499 -14.23553 -14.10026 -13.89330 -13.79545 -13.52731 -13.11108 -13.00640 -12.82744 -12.68827 -12.60267 -12.50527 -12.32596 -12.11606 -11.98229 -11.94983 -11.72241 -11.56997 -11.46521 -11.30310 -11.05677 -10.80290 -10.71620 -9.37421 -9.33275 -9.00234 -8.80761 -6.23961 1.00209 1.05145 1.51809 1.67521 1.79514 2.37696 2.77500 3.18137 3.78115 3.97079 4.08647 4.21355 4.25689 4.33207 4.37700 4.45909 4.51256 4.57946 4.61716 4.63594 4.72433 4.75070 4.77023 4.84596 4.92326 4.99222 5.04081 5.08532 5.12177 5.16769 5.18882 5.26112 5.32683 5.42362 5.44780 5.49413 5.60801 5.63610 5.72084 5.88172 5.99216 6.10994 6.17385 6.37399 6.49696 6.53115 6.59366 7.04161 7.15366 8.18299 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013122 B = 0.008548 C = 0.006083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.313106 B = 3274.788317 C = 4601.968354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.122 4.122 3 C 0.052 3.948 4 N -0.525 5.525 5 C 0.136 3.864 6 C -0.186 4.186 7 C -0.083 4.083 8 C -0.255 4.255 9 C -0.096 4.096 10 C -0.246 4.246 11 C 0.099 3.901 12 C -0.520 4.520 13 H 0.088 0.912 14 C 0.001 3.999 15 N -0.828 5.828 16 Si 1.105 2.895 17 H -0.279 1.279 18 H -0.268 1.268 19 H -0.258 1.258 20 C 0.079 3.921 21 H 0.055 0.945 22 C -0.173 4.173 23 C -0.114 4.114 24 C -0.136 4.136 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.046 0.954 31 H 0.053 0.947 32 H 0.026 0.974 33 H 0.051 0.949 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.281 0.719 39 H 0.076 0.924 40 H 0.067 0.933 41 H 0.045 0.955 42 H 0.068 0.932 43 H 0.085 0.915 44 H 0.044 0.956 45 H 0.025 0.975 46 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.776 -5.757 10.656 14.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.160 4.160 3 C -0.076 4.076 4 N -0.249 5.249 5 C 0.009 3.991 6 C -0.188 4.188 7 C -0.102 4.102 8 C -0.275 4.275 9 C -0.115 4.115 10 C -0.265 4.265 11 C 0.096 3.904 12 C -0.548 4.548 13 H 0.106 0.894 14 C -0.215 4.215 15 N -0.453 5.453 16 Si 0.924 3.076 17 H -0.204 1.204 18 H -0.194 1.194 19 H -0.182 1.182 20 C -0.029 4.029 21 H 0.073 0.927 22 C -0.231 4.231 23 C -0.151 4.151 24 C -0.193 4.193 25 H 0.084 0.916 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.044 0.956 33 H 0.070 0.930 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.103 0.897 44 H 0.063 0.937 45 H 0.044 0.956 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -7.953 -6.300 8.624 13.316 hybrid contribution 0.882 1.238 1.840 2.387 sum -7.070 -5.062 10.464 13.606 Atomic orbital electron populations 1.21729 0.94675 1.02199 1.01790 1.21831 0.96029 0.95754 1.02338 1.22254 0.87532 0.97972 0.99842 1.62071 1.04500 1.18904 1.39409 1.20409 0.93032 0.89150 0.96513 1.19774 0.94107 1.09887 0.95033 1.20719 0.92707 0.99024 0.97734 1.20581 0.96537 1.14664 0.95672 1.20816 0.97200 0.98929 0.94542 1.21125 0.93863 1.12442 0.99084 1.17641 0.92143 0.88152 0.92478 1.20736 1.00925 1.39911 0.93275 0.89418 1.28171 0.97483 0.95985 0.99817 1.70552 1.19628 1.13653 1.41417 0.83151 0.75223 0.75429 0.73804 1.20378 1.19353 1.18212 1.21689 0.97330 0.95622 0.88282 0.92654 1.22423 1.01568 1.01143 0.97975 1.21832 1.00912 0.94603 0.97746 1.21541 0.98203 0.99887 0.99691 0.91649 0.92069 0.93364 0.92816 0.90062 0.93640 0.92848 0.95569 0.93036 0.87475 0.87159 0.88029 0.90323 0.90705 0.90554 0.91450 0.93545 0.91352 0.89666 0.93675 0.95591 0.93021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.91 71.98 0.71 -2.17 16 2 C -0.12 -2.99 4.20 30.59 0.13 -2.86 16 3 C 0.05 1.49 4.43 86.30 0.38 1.87 16 4 N -0.53 -18.20 3.13 -875.53 -2.74 -20.94 16 5 C 0.14 5.39 4.22 85.56 0.36 5.75 16 6 C -0.19 -8.57 4.90 -19.41 -0.10 -8.66 16 7 C -0.08 -3.58 8.57 22.22 0.19 -3.39 16 8 C -0.26 -11.16 10.05 22.46 0.23 -10.93 16 9 C -0.10 -4.56 10.02 22.22 0.22 -4.34 16 10 C -0.25 -13.01 7.96 22.73 0.18 -12.83 16 11 C 0.10 5.16 5.29 -21.29 -0.11 5.04 16 12 C -0.52 -27.23 8.15 23.46 0.19 -27.04 16 13 H 0.09 4.52 6.71 -2.91 -0.02 4.50 16 14 C 0.00 0.04 4.93 85.26 0.42 0.46 16 15 N -0.83 -45.77 12.31 21.83 0.27 -45.50 16 16 Si 1.10 44.86 30.00 68.60 2.06 46.91 16 17 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 18 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 19 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 20 C 0.08 2.42 2.01 44.92 0.09 2.51 16 21 H 0.06 1.96 6.24 -2.39 -0.01 1.95 16 22 C -0.17 -4.09 7.81 71.98 0.56 -3.53 16 23 C -0.11 -3.22 5.23 30.60 0.16 -3.06 16 24 C -0.14 -4.74 9.86 71.98 0.71 -4.03 16 25 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.05 1.54 7.98 -2.39 -0.02 1.52 16 29 H 0.08 1.79 4.16 -2.39 -0.01 1.78 16 30 H 0.05 1.18 5.87 -2.39 -0.01 1.17 16 31 H 0.05 1.69 7.86 -2.39 -0.02 1.67 16 32 H 0.03 0.95 7.50 -2.39 -0.02 0.94 16 33 H 0.05 2.21 7.29 -2.39 -0.02 2.20 16 34 H 0.11 4.03 8.00 -2.91 -0.02 4.00 16 35 H 0.11 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.10 4.33 8.06 -2.91 -0.02 4.31 16 37 H 0.08 4.45 6.51 -2.91 -0.02 4.43 16 38 H 0.28 16.20 6.74 -92.71 -0.62 15.58 16 39 H 0.08 1.60 5.08 -2.39 -0.01 1.59 16 40 H 0.07 1.40 8.14 -2.38 -0.02 1.38 16 41 H 0.05 1.14 7.33 -2.39 -0.02 1.12 16 42 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 43 H 0.09 2.22 4.27 -2.39 -0.01 2.21 16 44 H 0.04 1.91 7.67 -2.39 -0.02 1.89 16 45 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -57.30 346.62 5.00 -52.30 By element: Atomic # 1 Polarization: 33.35 SS G_CDS: 1.08 Total: 34.43 kcal Atomic # 6 Polarization: -71.54 SS G_CDS: 4.33 Total: -67.21 kcal Atomic # 7 Polarization: -63.98 SS G_CDS: -2.47 Total: -66.45 kcal Atomic # 14 Polarization: 44.86 SS G_CDS: 2.06 Total: 46.91 kcal Total: -57.30 5.00 -52.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511043.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.495 kcal (2) G-P(sol) polarization free energy of solvation -57.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds