Wall clock time and date at job start Mon Mar 30 2020 01:26:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46669 * 2 1 4 4 N 1.46904 * 109.46889 * 182.13632 * 3 2 1 5 5 C 1.46903 * 110.99780 * 281.30396 * 4 3 2 6 6 C 1.50700 * 109.46812 * 76.98714 * 5 4 3 7 7 C 1.37645 * 120.12828 * 244.34428 * 6 5 4 8 8 C 1.38607 * 120.24862 * 180.32134 * 7 6 5 9 9 C 1.38651 * 120.50518 * 359.67291 * 8 7 6 10 10 C 1.37605 * 120.24632 * 359.97438 * 9 8 7 11 11 C 1.40692 * 120.13210 * 64.04066 * 6 5 4 12 12 C 1.41397 * 120.24251 * 359.97438 * 11 6 5 13 13 H 1.08004 * 119.99771 * 334.10912 * 12 11 6 14 14 C 1.39947 * 120.00072 * 154.11267 * 12 11 6 15 15 N 1.30828 * 120.00123 * 334.39729 * 14 12 11 16 16 Si 1.86800 * 119.99986 * 154.40089 * 14 12 11 17 17 H 1.48503 * 109.47354 * 180.02562 * 16 14 12 18 18 H 1.48507 * 109.47094 * 299.99535 * 16 14 12 19 19 H 1.48492 * 109.47335 * 59.99638 * 16 14 12 20 20 C 1.46904 * 110.99984 * 157.35487 * 4 3 2 21 21 H 1.08995 * 109.46792 * 172.98116 * 20 4 3 22 22 C 1.53003 * 109.47025 * 52.98125 * 20 4 3 23 23 C 1.52998 * 109.46872 * 292.98226 * 20 4 3 24 24 C 1.52998 * 109.47374 * 296.44733 * 23 20 4 25 25 H 1.09001 * 109.47294 * 299.99783 * 1 2 3 26 26 H 1.08994 * 109.47081 * 60.00420 * 1 2 3 27 27 H 1.09008 * 109.46688 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47008 * 240.00069 * 2 1 3 29 29 H 1.09003 * 109.47259 * 119.99418 * 2 1 3 30 30 H 1.09000 * 109.47269 * 62.13695 * 3 2 1 31 31 H 1.08995 * 109.47474 * 302.13594 * 3 2 1 32 32 H 1.08997 * 109.47682 * 316.98719 * 5 4 3 33 33 H 1.08998 * 109.47002 * 196.98126 * 5 4 3 34 34 H 1.08006 * 119.87180 * 0.02562 * 7 6 5 35 35 H 1.08004 * 119.74643 * 179.69680 * 8 7 6 36 36 H 1.07997 * 119.88118 * 180.02562 * 9 8 7 37 37 H 1.07999 * 120.12946 * 180.02562 * 10 9 8 38 38 H 0.97000 * 119.99762 * 354.25578 * 15 14 12 39 39 H 1.09003 * 109.46817 * 60.00131 * 22 20 4 40 40 H 1.08999 * 109.46772 * 179.97438 * 22 20 4 41 41 H 1.09003 * 109.47132 * 300.00251 * 22 20 4 42 42 H 1.09006 * 109.47446 * 56.44459 * 23 20 4 43 43 H 1.09000 * 109.46878 * 176.44041 * 23 20 4 44 44 H 1.09004 * 109.47213 * 59.99910 * 24 23 20 45 45 H 1.08994 * 109.47517 * 179.97438 * 24 23 20 46 46 H 1.08999 * 109.46768 * 299.99859 * 24 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5080 1.4429 -0.0516 5 6 4.0813 1.1575 1.2705 6 6 3.9730 -0.3180 1.5570 7 6 3.1889 -0.7642 2.5966 8 6 3.0927 -2.1203 2.8665 9 6 3.7780 -3.0427 2.0906 10 6 4.5620 -2.6199 1.0418 11 6 4.6679 -1.2453 0.7591 12 6 5.4709 -0.7991 -0.3158 13 1 5.2536 0.1428 -0.7975 14 6 6.5472 -1.5781 -0.7556 15 7 7.1292 -2.4132 0.0663 16 14 7.1528 -1.4253 -2.5161 17 1 8.2942 -2.3513 -2.7290 18 1 6.0523 -1.7741 -3.4502 19 1 7.5930 -0.0299 -2.7688 20 6 4.0158 2.7153 -0.5821 21 1 5.1020 2.7380 -0.4939 22 6 3.4151 3.8757 0.2138 23 6 3.6208 2.8480 -2.0542 24 6 4.2935 1.7384 -2.8649 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 1.7082 1.9452 0.9085 31 1 1.6456 1.9673 -0.8702 32 1 3.5363 1.7163 2.0312 33 1 5.1301 1.4541 1.2834 34 1 2.6503 -0.0545 3.2072 35 1 2.4789 -2.4611 3.6873 36 1 3.6955 -4.0970 2.3096 37 1 5.0947 -3.3400 0.4384 38 1 6.8708 -2.4331 1.0010 39 1 3.6966 3.7811 1.2626 40 1 3.7922 4.8197 -0.1795 41 1 2.3288 3.8529 0.1257 42 1 2.5383 2.7619 -2.1491 43 1 3.9423 3.8191 -2.4305 44 1 3.9718 0.7673 -2.4885 45 1 4.0117 1.8327 -3.9135 46 1 5.3759 1.8245 -2.7700 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235511044.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:33 Heat of formation + Delta-G solvation = -8.360019 kcal Electronic energy + Delta-G solvation = -23147.265350 eV Core-core repulsion = 20228.262159 eV Total energy + Delta-G solvation = -2919.003192 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.49804 -38.82997 -35.69656 -34.98476 -33.63630 -31.72938 -30.97028 -29.91739 -27.50175 -26.82407 -25.41299 -23.86931 -22.69004 -22.32441 -21.46463 -20.21525 -19.43965 -17.08351 -16.75960 -16.41774 -16.20351 -15.69397 -15.34430 -15.22733 -14.80595 -14.43228 -14.20311 -14.09433 -13.91980 -13.69184 -13.61601 -13.33629 -13.04527 -12.77857 -12.74601 -12.68894 -12.33734 -12.25726 -11.99818 -11.93168 -11.89389 -11.79268 -11.47557 -11.35028 -11.32136 -11.13691 -11.00815 -10.67447 -9.28666 -9.22964 -8.96013 -8.74297 -6.16113 1.04037 1.08217 1.51321 1.67887 1.78056 2.38769 2.81274 3.20225 3.79816 3.95069 4.14839 4.24096 4.29467 4.34016 4.43086 4.45653 4.53415 4.60259 4.64175 4.65861 4.72190 4.76143 4.81264 4.88089 4.90558 5.02413 5.03606 5.09018 5.16959 5.21195 5.21583 5.29465 5.33079 5.43676 5.48122 5.49964 5.65202 5.69503 5.76113 5.91844 6.03918 6.15280 6.29067 6.40666 6.54841 6.57962 6.63453 7.11705 7.23397 8.23362 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.012086 B = 0.009917 C = 0.006603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.137278 B = 2822.897183 C = 4239.370698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.132 4.132 3 C 0.072 3.928 4 N -0.523 5.523 5 C 0.138 3.862 6 C -0.182 4.182 7 C -0.081 4.081 8 C -0.257 4.257 9 C -0.097 4.097 10 C -0.249 4.249 11 C 0.099 3.901 12 C -0.520 4.520 13 H 0.110 0.890 14 C 0.000 4.000 15 N -0.833 5.833 16 Si 1.095 2.905 17 H -0.283 1.283 18 H -0.267 1.267 19 H -0.254 1.254 20 C 0.074 3.926 21 H 0.063 0.937 22 C -0.174 4.174 23 C -0.103 4.103 24 C -0.147 4.147 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.067 0.933 30 H 0.030 0.970 31 H 0.078 0.922 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.108 0.892 35 H 0.109 0.891 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.281 0.719 39 H 0.044 0.956 40 H 0.072 0.928 41 H 0.061 0.939 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.047 0.953 45 H 0.057 0.943 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.819 10.675 -2.874 13.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.170 4.170 3 C -0.056 4.056 4 N -0.245 5.245 5 C 0.011 3.989 6 C -0.183 4.183 7 C -0.100 4.100 8 C -0.276 4.276 9 C -0.116 4.116 10 C -0.269 4.269 11 C 0.096 3.904 12 C -0.548 4.548 13 H 0.127 0.873 14 C -0.215 4.215 15 N -0.458 5.458 16 Si 0.915 3.085 17 H -0.208 1.208 18 H -0.192 1.192 19 H -0.178 1.178 20 C -0.034 4.034 21 H 0.082 0.918 22 C -0.233 4.233 23 C -0.140 4.140 24 C -0.204 4.204 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.085 0.915 30 H 0.048 0.952 31 H 0.096 0.904 32 H 0.049 0.951 33 H 0.066 0.934 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.097 0.903 44 H 0.066 0.934 45 H 0.076 0.924 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -6.540 9.677 -4.255 12.431 hybrid contribution -1.004 0.418 1.995 2.272 sum -7.544 10.095 -2.260 12.803 Atomic orbital electron populations 1.21660 0.94911 1.01272 1.01800 1.21757 0.95529 0.97356 1.02369 1.22052 0.87373 0.96244 0.99926 1.62033 1.06635 1.31593 1.24286 1.20441 0.97586 0.92019 0.88833 1.19749 1.05608 0.94502 0.98490 1.20644 0.97488 0.95059 0.96791 1.20537 1.08839 0.93408 1.04800 1.20786 0.96948 0.98097 0.95747 1.21148 1.07149 0.96196 1.02397 1.17621 0.91328 0.90490 0.90968 1.21088 1.10912 1.08697 1.14103 0.87256 1.28090 0.94279 0.90952 1.08190 1.70555 1.36656 1.31762 1.06832 0.83292 0.76573 0.78297 0.70349 1.20805 1.19227 1.17791 1.21852 0.98888 0.87405 0.95243 0.91849 1.22406 1.01602 0.99342 0.99956 1.21527 1.00581 0.98865 0.93075 1.21690 0.99835 0.99726 0.99185 0.92432 0.92076 0.93437 0.94665 0.91451 0.95160 0.90396 0.95108 0.93355 0.87441 0.87320 0.88342 0.90568 0.90740 0.93645 0.90916 0.91961 0.91608 0.90319 0.93355 0.92396 0.94109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.77 9.91 71.98 0.71 -3.05 16 2 C -0.13 -4.58 5.63 30.60 0.17 -4.41 16 3 C 0.07 2.19 3.51 86.30 0.30 2.50 16 4 N -0.52 -17.91 2.12 -875.51 -1.86 -19.77 16 5 C 0.14 5.33 3.80 85.56 0.32 5.65 16 6 C -0.18 -8.14 3.53 -19.40 -0.07 -8.21 16 7 C -0.08 -3.41 7.67 22.22 0.17 -3.24 16 8 C -0.26 -11.06 10.05 22.46 0.23 -10.83 16 9 C -0.10 -4.58 10.02 22.22 0.22 -4.36 16 10 C -0.25 -13.14 7.96 22.73 0.18 -12.96 16 11 C 0.10 5.08 5.28 -21.29 -0.11 4.97 16 12 C -0.52 -26.71 8.24 23.46 0.19 -26.52 16 13 H 0.11 5.36 5.14 -2.91 -0.01 5.35 16 14 C 0.00 0.00 4.93 85.26 0.42 0.42 16 15 N -0.83 -46.19 12.33 21.83 0.27 -45.92 16 16 Si 1.10 44.88 30.00 68.60 2.06 46.94 16 17 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 18 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 19 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 20 C 0.07 2.13 2.27 44.91 0.10 2.24 16 21 H 0.06 2.02 7.79 -2.39 -0.02 2.00 16 22 C -0.17 -4.04 8.57 71.98 0.62 -3.43 16 23 C -0.10 -2.59 5.35 30.59 0.16 -2.43 16 24 C -0.15 -4.38 9.43 71.98 0.68 -3.70 16 25 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 28 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.07 2.69 4.04 -2.39 -0.01 2.68 16 30 H 0.03 0.89 7.16 -2.39 -0.02 0.87 16 31 H 0.08 2.11 5.72 -2.39 -0.01 2.10 16 32 H 0.03 1.09 6.93 -2.39 -0.02 1.07 16 33 H 0.05 2.01 7.63 -2.39 -0.02 1.99 16 34 H 0.11 3.94 7.94 -2.91 -0.02 3.92 16 35 H 0.11 4.09 8.06 -2.91 -0.02 4.07 16 36 H 0.10 4.21 8.06 -2.91 -0.02 4.19 16 37 H 0.08 4.32 6.51 -2.91 -0.02 4.30 16 38 H 0.28 16.22 6.71 -92.71 -0.62 15.60 16 39 H 0.04 1.12 7.23 -2.39 -0.02 1.10 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.06 1.36 6.74 -2.39 -0.02 1.34 16 42 H 0.07 1.57 6.17 -2.38 -0.01 1.56 16 43 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 44 H 0.05 1.75 7.09 -2.39 -0.02 1.73 16 45 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.04 1.26 8.14 -2.39 -0.02 1.24 16 Total: -1.00 -56.43 345.99 5.86 -50.58 By element: Atomic # 1 Polarization: 34.46 SS G_CDS: 1.08 Total: 35.54 kcal Atomic # 6 Polarization: -71.68 SS G_CDS: 4.31 Total: -67.37 kcal Atomic # 7 Polarization: -64.10 SS G_CDS: -1.59 Total: -65.69 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.06 Total: 46.94 kcal Total: -56.43 5.86 -50.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235511044.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.215 kcal (2) G-P(sol) polarization free energy of solvation -56.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.360 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds