Wall clock time and date at job start Mon Mar 30 2020 01:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47253 * 2 1 4 4 N 1.46893 * 109.47294 * 185.37588 * 3 2 1 5 5 C 1.46902 * 111.00296 * 175.27059 * 4 3 2 6 6 C 1.50704 * 109.46748 * 294.50507 * 5 4 3 7 7 C 1.37635 * 120.12945 * 265.80543 * 6 5 4 8 8 C 1.38611 * 120.25063 * 179.97438 * 7 6 5 9 9 C 1.38657 * 120.49877 * 0.02607 * 8 7 6 10 10 C 1.37594 * 120.24803 * 0.02562 * 9 8 7 11 11 C 1.40705 * 120.12582 * 85.54178 * 6 5 4 12 12 C 1.41393 * 120.24190 * 359.97438 * 11 6 5 13 13 H 1.07994 * 120.00264 * 28.08628 * 12 11 6 14 14 C 1.39953 * 119.99536 * 208.08223 * 12 11 6 15 15 N 1.30825 * 119.99782 * 10.94204 * 14 12 11 16 16 Si 1.86797 * 119.99699 * 190.93656 * 14 12 11 17 17 H 1.48497 * 109.47241 * 60.00807 * 16 14 12 18 18 H 1.48506 * 109.46718 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47499 * 300.00255 * 16 14 12 20 20 C 1.46899 * 111.00177 * 299.22443 * 4 3 2 21 21 C 1.53001 * 109.47400 * 164.08350 * 20 4 3 22 22 C 1.52992 * 109.47357 * 175.25668 * 21 20 4 23 23 C 1.53007 * 109.47316 * 295.25630 * 21 20 4 24 24 H 1.08994 * 109.47206 * 300.00105 * 1 2 3 25 25 H 1.09008 * 109.46801 * 59.99867 * 1 2 3 26 26 H 1.08994 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47516 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47481 * 119.99885 * 2 1 3 29 29 H 1.09005 * 109.46979 * 65.37464 * 3 2 1 30 30 H 1.09001 * 109.46649 * 305.37722 * 3 2 1 31 31 H 1.08996 * 109.46631 * 54.50034 * 5 4 3 32 32 H 1.08996 * 109.47481 * 174.50589 * 5 4 3 33 33 H 1.08002 * 119.87240 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.74444 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.87132 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.12011 * 179.97438 * 10 9 8 37 37 H 0.97006 * 119.99514 * 179.97438 * 15 14 12 38 38 H 1.08989 * 109.47420 * 284.08448 * 20 4 3 39 39 H 1.09004 * 109.46685 * 44.08727 * 20 4 3 40 40 H 1.09002 * 109.46639 * 55.25207 * 21 20 4 41 41 H 1.09002 * 109.47623 * 60.00141 * 22 21 20 42 42 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47105 * 300.00098 * 22 21 20 44 44 H 1.08997 * 109.47285 * 185.00108 * 23 21 20 45 45 H 1.08998 * 109.46826 * 305.00557 * 23 21 20 46 46 H 1.09010 * 109.46697 * 65.00101 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5032 1.4446 -0.1298 5 6 4.0196 2.8150 -0.2461 6 6 3.5329 3.4274 -1.5343 7 6 4.3156 3.3712 -2.6650 8 6 3.8702 3.9332 -3.8512 9 6 2.6339 4.5578 -3.9134 10 6 1.8351 4.6267 -2.7951 11 6 2.2741 4.0539 -1.5870 12 6 1.4588 4.1122 -0.4333 13 1 1.9104 4.1121 0.5477 14 6 0.0665 4.1701 -0.5627 15 7 -0.4917 3.9560 -1.7263 16 14 -0.9947 4.5531 0.9261 17 1 -0.6288 5.8877 1.4647 18 1 -2.4251 4.5552 0.5270 19 1 -0.7741 3.5205 1.9701 20 6 4.1325 0.7387 0.9944 21 6 5.5854 0.4126 0.6429 22 6 6.2747 -0.2161 1.8555 23 6 5.6183 -0.5707 -0.5290 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7574 1.9279 0.9342 30 1 1.6002 1.9834 -0.8379 31 1 3.6648 3.4095 0.5957 32 1 5.1094 2.7942 -0.2427 33 1 5.2802 2.8867 -2.6280 34 1 4.4909 3.8840 -4.7337 35 1 2.2967 4.9920 -4.8430 36 1 0.8727 5.1142 -2.8458 37 1 -1.4568 3.9958 -1.8159 38 1 4.1066 1.3718 1.8812 39 1 3.5901 -0.1859 1.1921 40 1 6.1059 1.3285 0.3633 41 1 5.7542 -1.1321 2.1350 42 1 7.3099 -0.4480 1.6051 43 1 6.2513 0.4844 2.6903 44 1 6.6479 -0.8717 -0.7219 45 1 5.0228 -1.4497 -0.2824 46 1 5.2074 -0.0909 -1.4174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235524879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:29 Heat of formation + Delta-G solvation = -0.316597 kcal Electronic energy + Delta-G solvation = -22716.749966 eV Core-core repulsion = 19798.095564 eV Total energy + Delta-G solvation = -2918.654403 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -38.60081 -36.94137 -34.55394 -33.60206 -32.47064 -30.05440 -29.39381 -26.84834 -26.21130 -25.78567 -24.79135 -22.31589 -20.95912 -20.29374 -19.81847 -18.82931 -17.05839 -15.66719 -15.23148 -14.85935 -14.55856 -14.39351 -14.02268 -13.65955 -13.45248 -13.24453 -12.70884 -12.60597 -12.53102 -12.04906 -11.81621 -11.57735 -11.54617 -11.41360 -11.24492 -11.13330 -10.92350 -10.86261 -10.64160 -10.60448 -10.48045 -10.40337 -10.22049 -9.92634 -9.77053 -9.42668 -9.27730 -9.01470 -7.46823 -7.25035 -7.22509 -6.68469 -4.32224 2.79946 3.02344 3.05383 3.08324 3.24870 3.93644 4.63403 4.76962 5.13980 5.25887 5.43921 5.63028 5.65486 5.76463 5.80933 5.87408 5.90133 6.00458 6.07905 6.09931 6.14503 6.20869 6.31109 6.33904 6.37338 6.41732 6.44275 6.48617 6.52406 6.60186 6.69016 6.75292 6.76843 6.82633 6.95173 7.13632 7.31274 7.37859 7.43108 7.66464 7.92992 7.96900 8.02494 8.12022 8.15304 8.33909 8.65954 8.91958 8.99473 10.24205 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.007766 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.878911 B = 3604.434184 C = 4757.270155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.055 3.945 4 N -0.526 5.526 5 C 0.122 3.878 6 C -0.182 4.182 7 C -0.078 4.078 8 C -0.237 4.237 9 C -0.110 4.110 10 C -0.158 4.158 11 C 0.116 3.884 12 C -0.457 4.457 13 H 0.074 0.926 14 C 0.079 3.921 15 N -0.799 5.799 16 Si 0.895 3.105 17 H -0.266 1.266 18 H -0.278 1.278 19 H -0.266 1.266 20 C 0.052 3.948 21 C -0.093 4.093 22 C -0.145 4.145 23 C -0.133 4.133 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.043 0.957 27 H 0.062 0.938 28 H 0.045 0.955 29 H 0.023 0.977 30 H 0.121 0.879 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.119 0.881 37 H 0.279 0.721 38 H 0.022 0.978 39 H 0.070 0.930 40 H 0.068 0.932 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.049 0.951 44 H 0.039 0.961 45 H 0.045 0.955 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.659 -5.886 4.588 8.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.159 4.159 3 C -0.072 4.072 4 N -0.250 5.250 5 C -0.004 4.004 6 C -0.184 4.184 7 C -0.097 4.097 8 C -0.256 4.256 9 C -0.129 4.129 10 C -0.178 4.178 11 C 0.113 3.887 12 C -0.487 4.487 13 H 0.092 0.908 14 C -0.138 4.138 15 N -0.425 5.425 16 Si 0.720 3.280 17 H -0.191 1.191 18 H -0.203 1.203 19 H -0.191 1.191 20 C -0.077 4.077 21 C -0.111 4.111 22 C -0.203 4.203 23 C -0.190 4.190 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.080 0.920 28 H 0.063 0.937 29 H 0.042 0.958 30 H 0.139 0.861 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.137 0.863 37 H 0.090 0.910 38 H 0.040 0.960 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.058 0.942 45 H 0.064 0.936 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.529 -6.159 4.065 8.658 hybrid contribution -0.834 0.538 1.400 1.716 sum 3.695 -5.621 5.465 8.667 Atomic orbital electron populations 1.21677 0.96302 1.00207 1.02246 1.21621 0.95152 0.98320 1.00758 1.22610 0.86608 0.94877 1.03140 1.62172 1.06001 1.16247 1.40558 1.20636 0.96946 0.87220 0.95620 1.19496 0.98359 1.06263 0.94240 1.20332 0.97701 0.98708 0.92938 1.20384 0.98242 1.10032 0.96942 1.20699 0.94776 1.00127 0.97255 1.21364 1.00246 1.03053 0.93086 1.17436 0.90202 0.87961 0.93052 1.19398 0.90483 1.45035 0.93785 0.90830 1.25727 0.98661 0.92765 0.96598 1.69782 1.12370 1.36085 1.24308 0.86565 0.78891 0.80143 0.82393 1.19070 1.20322 1.19050 1.22236 0.94513 0.98563 0.92341 1.21108 0.95782 0.99030 0.95224 1.21823 0.99969 1.00492 0.98000 1.21665 0.99787 0.98474 0.99093 0.93435 0.92040 0.93797 0.91960 0.93675 0.95823 0.86083 0.95152 0.92667 0.89561 0.89784 0.89727 0.86284 0.91035 0.95991 0.91216 0.91358 0.93040 0.93011 0.93197 0.94199 0.93588 0.91204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.12 -2.11 5.62 -26.73 -0.15 -2.26 16 3 C 0.05 1.11 3.45 -3.82 -0.01 1.09 16 4 N -0.53 -9.99 4.03 -236.07 -0.95 -10.94 16 5 C 0.12 2.49 4.78 -4.97 -0.02 2.46 16 6 C -0.18 -4.20 5.04 -103.91 -0.52 -4.73 16 7 C -0.08 -1.74 9.66 -39.66 -0.38 -2.12 16 8 C -0.24 -5.31 10.05 -39.29 -0.39 -5.71 16 9 C -0.11 -2.58 10.02 -39.66 -0.40 -2.97 16 10 C -0.16 -4.01 8.66 -38.88 -0.34 -4.34 16 11 C 0.12 2.91 4.61 -106.83 -0.49 2.42 16 12 C -0.46 -11.21 5.25 -37.74 -0.20 -11.40 16 13 H 0.07 1.80 6.00 -52.49 -0.32 1.48 16 14 C 0.08 1.88 5.14 -17.34 -0.09 1.79 16 15 N -0.80 -19.68 10.82 55.55 0.60 -19.08 16 16 Si 0.90 18.38 29.57 -169.99 -5.03 13.35 16 17 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 18 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 19 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 20 C 0.05 0.83 4.23 -3.82 -0.02 0.81 16 21 C -0.09 -1.30 2.93 -90.62 -0.27 -1.56 16 22 C -0.14 -1.68 9.19 37.15 0.34 -1.33 16 23 C -0.13 -1.84 9.02 37.16 0.34 -1.51 16 24 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.14 8.14 -51.92 -0.42 0.72 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.72 6.39 -51.93 -0.33 0.39 16 29 H 0.02 0.50 7.46 -51.93 -0.39 0.12 16 30 H 0.12 2.91 4.71 -51.93 -0.24 2.67 16 31 H 0.03 0.65 6.46 -51.93 -0.34 0.31 16 32 H 0.05 1.04 6.26 -51.93 -0.33 0.71 16 33 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 34 H 0.08 1.69 8.06 -52.49 -0.42 1.27 16 35 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 36 H 0.12 3.13 6.20 -52.48 -0.33 2.80 16 37 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 38 H 0.02 0.36 8.05 -51.94 -0.42 -0.06 16 39 H 0.07 1.08 5.77 -51.93 -0.30 0.78 16 40 H 0.07 1.02 6.46 -51.93 -0.34 0.68 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 45 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 1.12 7.89 -51.92 -0.41 0.71 16 LS Contribution 350.70 15.07 5.28 5.28 Total: -1.00 -24.66 350.70 -10.27 -34.92 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -7.93 Total: 7.92 kcal Atomic # 6 Polarization: -29.23 SS G_CDS: -2.24 Total: -31.47 kcal Atomic # 7 Polarization: -29.66 SS G_CDS: -0.35 Total: -30.01 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.03 Total: 13.35 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -24.66 -10.27 -34.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235524879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.607 kcal (2) G-P(sol) polarization free energy of solvation -24.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds