Wall clock time and date at job start Mon Mar 30 2020 01:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47253 * 2 1 4 4 N 1.46893 * 109.47294 * 185.37588 * 3 2 1 5 5 C 1.46902 * 111.00296 * 175.27059 * 4 3 2 6 6 C 1.50704 * 109.46748 * 294.50507 * 5 4 3 7 7 C 1.37635 * 120.12945 * 265.80543 * 6 5 4 8 8 C 1.38611 * 120.25063 * 179.97438 * 7 6 5 9 9 C 1.38657 * 120.49877 * 0.02607 * 8 7 6 10 10 C 1.37594 * 120.24803 * 0.02562 * 9 8 7 11 11 C 1.40705 * 120.12582 * 85.54178 * 6 5 4 12 12 C 1.41393 * 120.24190 * 359.97438 * 11 6 5 13 13 H 1.07994 * 120.00264 * 28.08628 * 12 11 6 14 14 C 1.39953 * 119.99536 * 208.08223 * 12 11 6 15 15 N 1.30825 * 119.99782 * 10.94204 * 14 12 11 16 16 Si 1.86797 * 119.99699 * 190.93656 * 14 12 11 17 17 H 1.48497 * 109.47241 * 60.00807 * 16 14 12 18 18 H 1.48506 * 109.46718 * 180.02562 * 16 14 12 19 19 H 1.48490 * 109.47499 * 300.00255 * 16 14 12 20 20 C 1.46899 * 111.00177 * 299.22443 * 4 3 2 21 21 C 1.53001 * 109.47400 * 164.08350 * 20 4 3 22 22 C 1.52992 * 109.47357 * 175.25668 * 21 20 4 23 23 C 1.53007 * 109.47316 * 295.25630 * 21 20 4 24 24 H 1.08994 * 109.47206 * 300.00105 * 1 2 3 25 25 H 1.09008 * 109.46801 * 59.99867 * 1 2 3 26 26 H 1.08994 * 109.46726 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.47516 * 240.00240 * 2 1 3 28 28 H 1.08997 * 109.47481 * 119.99885 * 2 1 3 29 29 H 1.09005 * 109.46979 * 65.37464 * 3 2 1 30 30 H 1.09001 * 109.46649 * 305.37722 * 3 2 1 31 31 H 1.08996 * 109.46631 * 54.50034 * 5 4 3 32 32 H 1.08996 * 109.47481 * 174.50589 * 5 4 3 33 33 H 1.08002 * 119.87240 * 0.02562 * 7 6 5 34 34 H 1.07999 * 119.74444 * 180.02562 * 8 7 6 35 35 H 1.07998 * 119.87132 * 180.02562 * 9 8 7 36 36 H 1.08005 * 120.12011 * 179.97438 * 10 9 8 37 37 H 0.97006 * 119.99514 * 179.97438 * 15 14 12 38 38 H 1.08989 * 109.47420 * 284.08448 * 20 4 3 39 39 H 1.09004 * 109.46685 * 44.08727 * 20 4 3 40 40 H 1.09002 * 109.46639 * 55.25207 * 21 20 4 41 41 H 1.09002 * 109.47623 * 60.00141 * 22 21 20 42 42 H 1.09002 * 109.47097 * 180.02562 * 22 21 20 43 43 H 1.09005 * 109.47105 * 300.00098 * 22 21 20 44 44 H 1.08997 * 109.47285 * 185.00108 * 23 21 20 45 45 H 1.08998 * 109.46826 * 305.00557 * 23 21 20 46 46 H 1.09010 * 109.46697 * 65.00101 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 7 3.5032 1.4446 -0.1298 5 6 4.0196 2.8150 -0.2461 6 6 3.5329 3.4274 -1.5343 7 6 4.3156 3.3712 -2.6650 8 6 3.8702 3.9332 -3.8512 9 6 2.6339 4.5578 -3.9134 10 6 1.8351 4.6267 -2.7951 11 6 2.2741 4.0539 -1.5870 12 6 1.4588 4.1122 -0.4333 13 1 1.9104 4.1121 0.5477 14 6 0.0665 4.1701 -0.5627 15 7 -0.4917 3.9560 -1.7263 16 14 -0.9947 4.5531 0.9261 17 1 -0.6288 5.8877 1.4647 18 1 -2.4251 4.5552 0.5270 19 1 -0.7741 3.5205 1.9701 20 6 4.1325 0.7387 0.9944 21 6 5.5854 0.4126 0.6429 22 6 6.2747 -0.2161 1.8555 23 6 5.6183 -0.5707 -0.5290 24 1 -0.3633 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8901 26 1 -0.3632 -1.0276 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7574 1.9279 0.9342 30 1 1.6002 1.9834 -0.8379 31 1 3.6648 3.4095 0.5957 32 1 5.1094 2.7942 -0.2427 33 1 5.2802 2.8867 -2.6280 34 1 4.4909 3.8840 -4.7337 35 1 2.2967 4.9920 -4.8430 36 1 0.8727 5.1142 -2.8458 37 1 -1.4568 3.9958 -1.8159 38 1 4.1066 1.3718 1.8812 39 1 3.5901 -0.1859 1.1921 40 1 6.1059 1.3285 0.3633 41 1 5.7542 -1.1321 2.1350 42 1 7.3099 -0.4480 1.6051 43 1 6.2513 0.4844 2.6903 44 1 6.6479 -0.8717 -0.7219 45 1 5.0228 -1.4497 -0.2824 46 1 5.2074 -0.0909 -1.4174 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235524879.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:26:28 Heat of formation + Delta-G solvation = -10.095439 kcal Electronic energy + Delta-G solvation = -22717.174009 eV Core-core repulsion = 19798.095564 eV Total energy + Delta-G solvation = -2919.078445 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 275.194 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.23422 -38.51909 -35.89527 -35.36365 -33.98545 -31.72933 -31.21409 -27.91167 -27.83921 -27.16682 -26.54521 -23.81082 -22.77742 -21.76231 -21.34417 -20.31676 -18.89588 -17.37262 -16.75639 -16.33383 -16.12725 -15.85585 -15.49232 -15.31414 -15.09328 -14.53640 -14.34042 -14.07939 -13.94184 -13.30278 -13.26006 -13.18638 -12.97525 -12.84124 -12.83034 -12.64241 -12.58992 -12.47076 -12.18765 -12.09208 -11.79583 -11.67724 -11.64489 -11.43907 -11.29739 -11.05852 -11.04484 -10.76806 -9.19167 -9.11039 -8.89357 -8.50313 -6.20527 1.02668 1.19328 1.35806 1.43023 1.51726 2.20733 2.84759 3.24663 3.84420 4.00829 4.15440 4.17118 4.26502 4.41561 4.43360 4.49552 4.59616 4.64124 4.68090 4.76830 4.77479 4.81577 4.87711 4.93669 4.97897 5.03873 5.06926 5.11435 5.14975 5.19884 5.27921 5.33377 5.34308 5.44011 5.45598 5.56233 5.59093 5.64106 5.72130 5.82722 6.10845 6.19644 6.27361 6.39463 6.49678 6.57080 6.79587 7.05608 7.13937 8.44079 Molecular weight = 275.19amu Principal moments of inertia in cm(-1) A = 0.013838 B = 0.007766 C = 0.005884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2022.878911 B = 3604.434184 C = 4757.270155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.113 4.113 3 C 0.063 3.937 4 N -0.527 5.527 5 C 0.130 3.870 6 C -0.188 4.188 7 C -0.085 4.085 8 C -0.238 4.238 9 C -0.118 4.118 10 C -0.186 4.186 11 C 0.092 3.908 12 C -0.467 4.467 13 H 0.066 0.934 14 C 0.048 3.952 15 N -0.826 5.826 16 Si 0.950 3.050 17 H -0.266 1.266 18 H -0.270 1.270 19 H -0.262 1.262 20 C 0.052 3.948 21 C -0.090 4.090 22 C -0.139 4.139 23 C -0.128 4.128 24 H 0.044 0.956 25 H 0.035 0.965 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.006 0.994 30 H 0.082 0.918 31 H 0.014 0.986 32 H 0.072 0.928 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.282 0.718 38 H 0.019 0.981 39 H 0.079 0.921 40 H 0.059 0.941 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.051 0.949 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.883 -7.482 5.555 11.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.151 4.151 3 C -0.064 4.064 4 N -0.251 5.251 5 C 0.003 3.997 6 C -0.190 4.190 7 C -0.103 4.103 8 C -0.257 4.257 9 C -0.137 4.137 10 C -0.206 4.206 11 C 0.090 3.910 12 C -0.497 4.497 13 H 0.084 0.916 14 C -0.166 4.166 15 N -0.453 5.453 16 Si 0.772 3.228 17 H -0.190 1.190 18 H -0.195 1.195 19 H -0.186 1.186 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.197 4.197 23 C -0.185 4.185 24 H 0.063 0.937 25 H 0.054 0.946 26 H 0.091 0.909 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.025 0.975 30 H 0.100 0.900 31 H 0.032 0.968 32 H 0.091 0.909 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.037 0.963 39 H 0.097 0.903 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 5.764 -7.758 5.029 10.895 hybrid contribution -1.140 1.013 1.045 1.849 sum 4.624 -6.745 6.074 10.187 Atomic orbital electron populations 1.21638 0.95831 1.01658 1.00837 1.21554 0.95522 0.96416 1.01602 1.22347 0.87461 0.96120 1.00482 1.62152 1.05314 1.15367 1.42221 1.20536 0.97732 0.87705 0.93689 1.19841 0.97740 1.05653 0.95759 1.20654 0.98547 0.98481 0.92643 1.20726 0.97986 1.08949 0.98042 1.20943 0.95124 1.00196 0.97391 1.21350 1.00277 1.04599 0.94365 1.17724 0.91381 0.88619 0.93277 1.19398 0.91128 1.45913 0.93301 0.91577 1.26309 0.99324 0.92226 0.98766 1.69851 1.12724 1.36771 1.25917 0.85727 0.77706 0.79800 0.79532 1.19035 1.19472 1.18614 1.22344 0.95844 0.98295 0.91060 1.21089 0.94257 0.98956 0.96538 1.21765 1.00556 1.00652 0.96707 1.21606 1.00839 0.98283 0.97790 0.93663 0.94601 0.90868 0.92263 0.91417 0.97535 0.89973 0.96818 0.90927 0.87162 0.87031 0.87950 0.88148 0.90728 0.96285 0.90264 0.92310 0.92175 0.91582 0.92951 0.92425 0.93026 0.93777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.67 9.91 71.98 0.71 -3.95 16 2 C -0.11 -3.85 5.62 30.60 0.17 -3.68 16 3 C 0.06 2.60 3.45 86.31 0.30 2.90 16 4 N -0.53 -19.78 4.03 -900.80 -3.63 -23.41 16 5 C 0.13 5.30 4.78 85.56 0.41 5.71 16 6 C -0.19 -8.79 5.04 -19.40 -0.10 -8.89 16 7 C -0.08 -3.71 9.66 22.22 0.21 -3.49 16 8 C -0.24 -10.43 10.05 22.46 0.23 -10.20 16 9 C -0.12 -5.57 10.02 22.22 0.22 -5.34 16 10 C -0.19 -9.78 8.66 22.73 0.20 -9.58 16 11 C 0.09 4.79 4.61 -21.29 -0.10 4.69 16 12 C -0.47 -23.79 5.25 23.46 0.12 -23.67 16 13 H 0.07 3.37 6.00 -2.91 -0.02 3.35 16 14 C 0.05 2.34 5.14 85.26 0.44 2.78 16 15 N -0.83 -42.21 10.82 21.83 0.24 -41.97 16 16 Si 0.95 38.31 29.57 68.60 2.03 40.34 16 17 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 20 C 0.05 1.58 4.23 86.30 0.36 1.95 16 21 C -0.09 -2.29 2.93 -10.79 -0.03 -2.32 16 22 C -0.14 -2.76 9.19 71.98 0.66 -2.10 16 23 C -0.13 -3.23 9.02 71.98 0.65 -2.58 16 24 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.07 1.95 8.14 -2.39 -0.02 1.94 16 27 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 28 H 0.07 2.00 6.39 -2.39 -0.02 1.98 16 29 H 0.01 0.28 7.46 -2.38 -0.02 0.26 16 30 H 0.08 4.09 4.71 -2.39 -0.01 4.08 16 31 H 0.01 0.60 6.46 -2.39 -0.02 0.58 16 32 H 0.07 2.66 6.26 -2.39 -0.01 2.65 16 33 H 0.11 4.24 8.06 -2.91 -0.02 4.21 16 34 H 0.11 4.22 8.06 -2.91 -0.02 4.20 16 35 H 0.10 4.32 8.06 -2.91 -0.02 4.30 16 36 H 0.10 5.55 6.20 -2.91 -0.02 5.53 16 37 H 0.28 13.39 8.30 -92.70 -0.77 12.62 16 38 H 0.02 0.59 8.05 -2.39 -0.02 0.57 16 39 H 0.08 2.25 5.77 -2.39 -0.01 2.24 16 40 H 0.06 1.62 6.46 -2.39 -0.02 1.61 16 41 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 44 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 45 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.04 1.34 7.89 -2.38 -0.02 1.32 16 Total: -1.00 -54.24 350.70 4.02 -50.22 By element: Atomic # 1 Polarization: 31.67 SS G_CDS: 0.93 Total: 32.59 kcal Atomic # 6 Polarization: -62.23 SS G_CDS: 4.46 Total: -57.77 kcal Atomic # 7 Polarization: -61.99 SS G_CDS: -3.40 Total: -65.39 kcal Atomic # 14 Polarization: 38.31 SS G_CDS: 2.03 Total: 40.34 kcal Total: -54.24 4.02 -50.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235524879.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.127 kcal (2) G-P(sol) polarization free energy of solvation -54.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds