Wall clock time and date at job start Mon Mar 30 2020 02:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47387 * 274.65612 * 3 2 1 5 5 H 1.48498 * 109.47173 * 34.66058 * 3 2 1 6 6 H 1.48505 * 109.46778 * 154.65610 * 3 2 1 7 7 C 1.39928 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00558 * 162.27421 * 7 2 1 9 9 C 1.41322 * 119.99737 * 342.27382 * 7 2 1 10 10 C 1.40775 * 120.20949 * 335.08466 * 9 7 2 11 11 C 1.37614 * 120.02178 * 179.97438 * 10 9 7 12 12 C 1.38508 * 120.45343 * 359.71846 * 11 10 9 13 13 C 1.39552 * 120.41928 * 0.55620 * 12 11 10 14 14 C 1.48381 * 120.02060 * 179.71447 * 13 12 11 15 15 C 1.39340 * 120.10779 * 129.95771 * 14 13 12 16 16 C 1.38002 * 119.88982 * 180.23071 * 15 14 13 17 17 C 1.38433 * 120.10571 * 359.52321 * 16 15 14 18 18 Cl 1.73601 * 119.88966 * 180.25020 * 17 16 15 19 19 C 1.38437 * 120.22107 * 0.27511 * 17 16 15 20 20 C 1.37988 * 120.10696 * 359.95212 * 19 17 16 21 21 C 1.39103 * 119.96413 * 359.45109 * 13 12 11 22 22 F 1.35105 * 120.22047 * 180.25246 * 21 13 12 23 23 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.98925 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.77878 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.79387 * 180.28055 * 12 11 10 27 27 H 1.07997 * 120.05557 * 0.02562 * 15 14 13 28 28 H 1.08006 * 119.94442 * 179.79548 * 16 15 14 29 29 H 1.08002 * 119.94593 * 179.97438 * 19 17 16 30 30 H 1.08003 * 120.05938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3916 2.1033 -1.3954 5 1 1.4927 2.6222 0.7962 6 1 3.5858 1.4137 0.5993 7 6 2.0081 -1.2118 -0.0005 8 1 3.0496 -1.2340 -0.2853 9 6 1.3518 -2.4068 0.3716 10 6 0.2252 -2.3632 1.2145 11 6 -0.4113 -3.5291 1.5740 12 6 0.0450 -4.7507 1.1072 13 6 1.1635 -4.8161 0.2753 14 6 1.6486 -6.1301 -0.2145 15 6 1.9006 -6.3205 -1.5716 16 6 2.3471 -7.5458 -2.0229 17 6 2.5540 -8.5819 -1.1284 18 17 3.1219 -10.1191 -1.7014 19 6 2.3090 -8.3965 0.2214 20 6 1.8579 -7.1764 0.6818 21 6 1.8203 -3.6484 -0.0990 22 9 2.9006 -3.7053 -0.9083 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1398 -1.4143 1.5792 25 1 -1.2751 -3.4911 2.2212 26 1 -0.4654 -5.6588 1.3924 27 1 1.7437 -5.5114 -2.2696 28 1 2.5396 -7.6953 -3.0751 29 1 2.4715 -9.2080 0.9153 30 1 1.6674 -7.0324 1.7351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:50 Heat of formation + Delta-G solvation = -23.087987 kcal Electronic energy + Delta-G solvation = -17811.362166 eV Core-core repulsion = 14703.751236 eV Total energy + Delta-G solvation = -3107.610930 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.35774 -39.09357 -37.27876 -36.27659 -33.98257 -31.55850 -30.87557 -29.71711 -27.84932 -25.46086 -22.80410 -22.55456 -20.77058 -20.34981 -17.64681 -16.71256 -16.09885 -15.54885 -15.23937 -14.95869 -14.49949 -14.07703 -13.95539 -13.28749 -13.23633 -13.10782 -12.94877 -11.99562 -11.89923 -11.67303 -11.49187 -11.45928 -11.09454 -11.05391 -10.84173 -10.63255 -10.51903 -9.96952 -9.68292 -9.36496 -8.82971 -8.56338 -7.59681 -7.30589 -6.93735 -4.53332 1.25347 1.53958 2.24666 2.56622 2.62038 2.99871 3.02340 3.09038 3.81988 3.92495 4.41516 5.02454 5.05291 5.19109 5.35748 5.58057 5.64517 5.75715 5.89838 6.10774 6.19366 6.40173 6.42725 6.46573 6.70674 6.76744 6.97120 7.04775 7.07134 7.36260 7.45875 7.77923 7.83960 7.94712 8.39283 8.61005 8.68984 9.99901 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.035908 B = 0.004180 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.586921 B = 6696.767225 C = 7235.549162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.788 5.788 2 C 0.077 3.923 3 Si 0.912 3.088 4 H -0.268 1.268 5 H -0.273 1.273 6 H -0.258 1.258 7 C -0.453 4.453 8 H 0.084 0.916 9 C 0.085 3.915 10 C -0.140 4.140 11 C -0.111 4.111 12 C -0.200 4.200 13 C -0.072 4.072 14 C -0.008 4.008 15 C -0.093 4.093 16 C -0.110 4.110 17 C -0.047 4.047 18 Cl -0.087 7.087 19 C -0.113 4.113 20 C -0.101 4.101 21 C -0.009 4.009 22 F -0.157 7.157 23 H 0.284 0.716 24 H 0.126 0.874 25 H 0.098 0.902 26 H 0.099 0.901 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.544 -9.432 -0.013 9.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.142 4.142 3 Si 0.736 3.264 4 H -0.193 1.193 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.482 4.482 8 H 0.102 0.898 9 C 0.082 3.918 10 C -0.159 4.159 11 C -0.130 4.130 12 C -0.220 4.220 13 C -0.073 4.073 14 C -0.008 4.008 15 C -0.111 4.111 16 C -0.129 4.129 17 C -0.074 4.074 18 Cl -0.059 7.059 19 C -0.132 4.132 20 C -0.119 4.119 21 C -0.029 4.029 22 F -0.136 7.136 23 H 0.095 0.905 24 H 0.144 0.856 25 H 0.116 0.884 26 H 0.118 0.882 27 H 0.151 0.849 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.432 -9.401 -0.113 9.510 hybrid contribution 0.488 0.624 -0.263 0.834 sum 1.920 -8.778 -0.376 8.993 Atomic orbital electron populations 1.69811 1.07654 1.29701 1.34080 1.25914 0.94770 1.01539 0.91972 0.86222 0.80785 0.80109 0.79296 1.19346 1.19831 1.18215 1.19522 0.98428 0.90887 1.39348 0.89823 1.17558 0.92671 0.90650 0.90926 1.21255 0.97991 0.97420 0.99250 1.20663 0.99237 0.92825 1.00257 1.20231 0.99437 0.96892 1.05401 1.18260 0.98089 0.89283 1.01627 1.19071 0.95529 0.93388 0.92817 1.21300 0.97913 0.96379 0.95510 1.20932 1.00506 0.92091 0.99377 1.20864 1.05066 0.87168 0.94261 1.98335 1.88016 1.30086 1.89438 1.20897 1.00767 0.98064 0.93432 1.21212 0.99067 0.91617 1.00005 1.17820 0.90718 0.93687 1.00662 1.91283 1.53545 1.97179 1.71585 0.90498 0.85582 0.88408 0.88244 0.84915 0.85277 0.85329 0.84982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.31 10.98 55.55 0.61 -18.70 16 2 C 0.08 1.85 5.14 -17.34 -0.09 1.76 16 3 Si 0.91 18.01 29.59 -169.99 -5.03 12.98 16 4 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 7 C -0.45 -11.76 8.78 -37.78 -0.33 -12.09 16 8 H 0.08 2.16 7.74 -52.49 -0.41 1.75 16 9 C 0.09 2.20 5.57 -106.80 -0.60 1.60 16 10 C -0.14 -3.39 8.68 -38.85 -0.34 -3.73 16 11 C -0.11 -2.39 10.01 -39.71 -0.40 -2.79 16 12 C -0.20 -4.14 9.51 -38.99 -0.37 -4.51 16 13 C -0.07 -1.55 5.47 -104.91 -0.57 -2.12 16 14 C -0.01 -0.15 5.31 -104.90 -0.56 -0.70 16 15 C -0.09 -1.62 8.85 -39.26 -0.35 -1.96 16 16 C -0.11 -1.65 9.81 -39.60 -0.39 -2.04 16 17 C -0.05 -0.68 6.32 -39.44 -0.25 -0.93 16 18 Cl -0.09 -1.09 28.95 -51.86 -1.50 -2.60 16 19 C -0.11 -1.59 9.81 -39.60 -0.39 -1.98 16 20 C -0.10 -1.60 9.51 -39.26 -0.37 -1.98 16 21 C -0.01 -0.21 7.16 -38.29 -0.27 -0.48 16 22 F -0.16 -3.82 15.31 2.25 0.03 -3.78 16 23 H 0.28 6.28 8.30 -40.82 -0.34 5.94 16 24 H 0.13 3.12 6.18 -52.48 -0.32 2.80 16 25 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 26 H 0.10 1.80 8.04 -52.49 -0.42 1.38 16 27 H 0.13 2.36 7.76 -52.49 -0.41 1.95 16 28 H 0.13 1.65 8.06 -52.48 -0.42 1.22 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 30 H 0.13 1.91 8.04 -52.48 -0.42 1.49 16 LS Contribution 286.31 15.07 4.31 4.31 Total: -1.00 -25.87 286.31 -9.23 -35.10 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -2.38 Total: 4.63 kcal Atomic # 6 Polarization: -26.68 SS G_CDS: -5.27 Total: -31.95 kcal Atomic # 7 Polarization: -19.31 SS G_CDS: 0.61 Total: -18.70 kcal Atomic # 9 Polarization: -3.82 SS G_CDS: 0.03 Total: -3.78 kcal Atomic # 14 Polarization: 18.01 SS G_CDS: -5.03 Total: 12.98 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -25.87 -9.23 -35.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.017 kcal (2) G-P(sol) polarization free energy of solvation -25.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds