Wall clock time and date at job start Mon Mar 30 2020 02:01:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30852 * 1 3 3 Si 1.86799 * 119.99972 * 2 1 4 4 H 1.48500 * 109.47387 * 274.65612 * 3 2 1 5 5 H 1.48498 * 109.47173 * 34.66058 * 3 2 1 6 6 H 1.48505 * 109.46778 * 154.65610 * 3 2 1 7 7 C 1.39928 * 119.99958 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00558 * 162.27421 * 7 2 1 9 9 C 1.41322 * 119.99737 * 342.27382 * 7 2 1 10 10 C 1.40775 * 120.20949 * 335.08466 * 9 7 2 11 11 C 1.37614 * 120.02178 * 179.97438 * 10 9 7 12 12 C 1.38508 * 120.45343 * 359.71846 * 11 10 9 13 13 C 1.39552 * 120.41928 * 0.55620 * 12 11 10 14 14 C 1.48381 * 120.02060 * 179.71447 * 13 12 11 15 15 C 1.39340 * 120.10779 * 129.95771 * 14 13 12 16 16 C 1.38002 * 119.88982 * 180.23071 * 15 14 13 17 17 C 1.38433 * 120.10571 * 359.52321 * 16 15 14 18 18 Cl 1.73601 * 119.88966 * 180.25020 * 17 16 15 19 19 C 1.38437 * 120.22107 * 0.27511 * 17 16 15 20 20 C 1.37988 * 120.10696 * 359.95212 * 19 17 16 21 21 C 1.39103 * 119.96413 * 359.45109 * 13 12 11 22 22 F 1.35105 * 120.22047 * 180.25246 * 21 13 12 23 23 H 0.97006 * 119.99491 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.98925 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.77878 * 179.97438 * 11 10 9 26 26 H 1.08000 * 119.79387 * 180.28055 * 12 11 10 27 27 H 1.07997 * 120.05557 * 0.02562 * 15 14 13 28 28 H 1.08006 * 119.94442 * 179.79548 * 16 15 14 29 29 H 1.08002 * 119.94593 * 179.97438 * 19 17 16 30 30 H 1.08003 * 120.05938 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6177 0.0000 4 1 2.3916 2.1033 -1.3954 5 1 1.4927 2.6222 0.7962 6 1 3.5858 1.4137 0.5993 7 6 2.0081 -1.2118 -0.0005 8 1 3.0496 -1.2340 -0.2853 9 6 1.3518 -2.4068 0.3716 10 6 0.2252 -2.3632 1.2145 11 6 -0.4113 -3.5291 1.5740 12 6 0.0450 -4.7507 1.1072 13 6 1.1635 -4.8161 0.2753 14 6 1.6486 -6.1301 -0.2145 15 6 1.9006 -6.3205 -1.5716 16 6 2.3471 -7.5458 -2.0229 17 6 2.5540 -8.5819 -1.1284 18 17 3.1219 -10.1191 -1.7014 19 6 2.3090 -8.3965 0.2214 20 6 1.8579 -7.1764 0.6818 21 6 1.8203 -3.6484 -0.0990 22 9 2.9006 -3.7053 -0.9083 23 1 -0.4850 0.8401 -0.0004 24 1 -0.1398 -1.4143 1.5792 25 1 -1.2751 -3.4911 2.2212 26 1 -0.4654 -5.6588 1.3924 27 1 1.7437 -5.5114 -2.2696 28 1 2.5396 -7.6953 -3.0751 29 1 2.4715 -9.2080 0.9153 30 1 1.6674 -7.0324 1.7351 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088206.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:49 Heat of formation + Delta-G solvation = -33.179190 kcal Electronic energy + Delta-G solvation = -17811.799753 eV Core-core repulsion = 14703.751236 eV Total energy + Delta-G solvation = -3108.048518 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.22688 -40.40743 -38.92775 -37.41724 -35.73785 -33.06885 -32.10342 -31.49026 -29.39060 -27.28969 -24.27435 -23.84414 -22.48212 -21.92720 -19.31543 -18.12421 -17.82583 -17.23376 -16.76323 -16.34489 -16.22101 -15.74434 -15.46084 -14.67295 -14.60044 -14.46608 -14.41653 -13.77419 -13.57282 -13.32741 -12.94491 -12.80073 -12.64470 -12.42025 -12.35002 -12.14219 -11.78258 -11.71395 -11.40965 -11.12758 -10.03382 -9.96718 -9.40063 -8.95259 -8.72734 -6.44600 -0.07372 0.32868 0.80396 0.93673 1.12262 1.36572 1.45260 1.52077 2.17702 2.55636 2.71459 3.48773 3.75180 3.84985 3.92754 3.99887 4.35876 4.40498 4.52332 4.62176 4.77206 4.93669 4.97677 5.08681 5.18311 5.21301 5.23922 5.51381 5.60283 5.73647 5.79182 5.98756 6.00565 6.14791 6.52942 6.74975 6.84562 8.23351 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.035908 B = 0.004180 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.586921 B = 6696.767225 C = 7235.549162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.042 3.958 3 Si 0.982 3.018 4 H -0.263 1.263 5 H -0.257 1.257 6 H -0.262 1.262 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.056 3.944 10 C -0.162 4.162 11 C -0.107 4.107 12 C -0.192 4.192 13 C -0.065 4.065 14 C -0.040 4.040 15 C -0.107 4.107 16 C -0.108 4.108 17 C -0.045 4.045 18 Cl -0.065 7.065 19 C -0.104 4.104 20 C -0.098 4.098 21 C -0.043 4.043 22 F -0.166 7.166 23 H 0.293 0.707 24 H 0.115 0.885 25 H 0.130 0.870 26 H 0.134 0.866 27 H 0.116 0.884 28 H 0.149 0.851 29 H 0.161 0.839 30 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.405 -11.355 0.563 11.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.175 4.175 3 Si 0.802 3.198 4 H -0.188 1.188 5 H -0.181 1.181 6 H -0.186 1.186 7 C -0.525 4.525 8 H 0.087 0.913 9 C 0.053 3.947 10 C -0.181 4.181 11 C -0.125 4.125 12 C -0.211 4.211 13 C -0.066 4.066 14 C -0.040 4.040 15 C -0.125 4.125 16 C -0.127 4.127 17 C -0.071 4.071 18 Cl -0.036 7.036 19 C -0.123 4.123 20 C -0.116 4.116 21 C -0.063 4.063 22 F -0.145 7.145 23 H 0.104 0.896 24 H 0.132 0.868 25 H 0.148 0.852 26 H 0.152 0.848 27 H 0.134 0.866 28 H 0.167 0.833 29 H 0.178 0.822 30 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 1.281 -11.346 0.462 11.428 hybrid contribution 0.516 0.961 -0.469 1.187 sum 1.798 -10.386 -0.007 10.540 Atomic orbital electron populations 1.69831 1.08767 1.31071 1.34369 1.26673 0.95552 1.04252 0.90975 0.85195 0.79190 0.75877 0.79534 1.18793 1.18134 1.18601 1.19658 0.98191 0.92559 1.42075 0.91331 1.17919 0.93683 0.91371 0.91702 1.21246 0.98511 0.98138 1.00226 1.21022 0.99527 0.92171 0.99821 1.20668 0.98614 0.97858 1.03974 1.18597 0.97501 0.89990 1.00473 1.19048 0.98217 0.92874 0.93863 1.21236 0.99050 0.97153 0.95079 1.21086 0.99672 0.91266 1.00661 1.21031 1.03801 0.87842 0.94449 1.98350 1.87618 1.28374 1.89260 1.21210 0.99108 0.98086 0.93848 1.21354 0.98554 0.91363 1.00284 1.18146 0.91505 0.94666 1.01947 1.91238 1.54009 1.97250 1.71977 0.89564 0.86765 0.85227 0.84788 0.86585 0.83301 0.82168 0.83486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.11 10.98 21.82 0.24 -40.87 16 2 C 0.04 2.07 5.14 85.25 0.44 2.51 16 3 Si 0.98 37.76 29.59 68.60 2.03 39.79 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 6 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 7 C -0.50 -27.20 8.78 23.44 0.21 -26.99 16 8 H 0.07 3.79 7.74 -2.91 -0.02 3.77 16 9 C 0.06 3.04 5.57 -21.27 -0.12 2.92 16 10 C -0.16 -8.08 8.68 22.74 0.20 -7.88 16 11 C -0.11 -4.53 10.01 22.19 0.22 -4.31 16 12 C -0.19 -7.66 9.51 22.65 0.22 -7.45 16 13 C -0.06 -2.81 5.47 -20.05 -0.11 -2.92 16 14 C -0.04 -1.45 5.31 -20.04 -0.11 -1.56 16 15 C -0.11 -3.70 8.85 22.48 0.20 -3.50 16 16 C -0.11 -3.05 9.81 22.26 0.22 -2.84 16 17 C -0.04 -1.15 6.32 22.36 0.14 -1.01 16 18 Cl -0.06 -1.41 28.95 -2.72 -0.08 -1.49 16 19 C -0.10 -2.57 9.81 22.26 0.22 -2.35 16 20 C -0.10 -2.85 9.51 22.48 0.21 -2.64 16 21 C -0.04 -2.17 7.16 23.11 0.17 -2.00 16 22 F -0.17 -8.51 15.31 44.97 0.69 -7.82 16 23 H 0.29 13.19 8.30 -92.70 -0.77 12.42 16 24 H 0.11 5.88 6.18 -2.91 -0.02 5.86 16 25 H 0.13 4.56 8.06 -2.91 -0.02 4.54 16 26 H 0.13 4.40 8.04 -2.91 -0.02 4.37 16 27 H 0.12 4.31 7.76 -2.91 -0.02 4.28 16 28 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 29 H 0.16 2.94 8.06 -2.91 -0.02 2.92 16 30 H 0.15 3.79 8.04 -2.91 -0.02 3.77 16 Total: -1.00 -58.09 286.31 6.15 -51.94 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: 1.17 Total: 18.47 kcal Atomic # 6 Polarization: -62.11 SS G_CDS: 2.10 Total: -60.01 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.24 Total: -40.87 kcal Atomic # 9 Polarization: -8.51 SS G_CDS: 0.69 Total: -7.82 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 2.03 Total: 39.79 kcal Atomic # 17 Polarization: -1.41 SS G_CDS: -0.08 Total: -1.49 kcal Total: -58.09 6.15 -51.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088206.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.757 kcal (2) G-P(sol) polarization free energy of solvation -58.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds