Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48495 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47085 * 300.00367 * 3 2 1 6 6 H 1.48495 * 109.47094 * 60.00281 * 3 2 1 7 7 C 1.40037 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99908 * 164.18302 * 7 2 1 9 9 C 1.40820 * 120.00182 * 344.19138 * 7 2 1 10 10 C 1.40795 * 120.29528 * 333.54942 * 9 7 2 11 11 C 1.36349 * 120.01337 * 179.70472 * 10 9 7 12 12 C 1.39216 * 120.65763 * 0.28075 * 11 10 9 13 13 F 1.35101 * 119.69719 * 179.97438 * 12 11 10 14 14 C 1.38392 * 120.60883 * 359.97438 * 12 11 10 15 15 C 1.39058 * 119.95856 * 0.02562 * 14 12 11 16 16 C 1.47867 * 120.32094 * 179.97438 * 15 14 12 17 17 C 1.39659 * 120.13174 * 129.72569 * 16 15 14 18 18 C 1.37895 * 119.86272 * 179.76749 * 17 16 15 19 19 C 1.38523 * 120.13320 * 0.51099 * 18 17 16 20 20 Cl 1.73600 * 119.86678 * 179.75998 * 19 18 17 21 21 C 1.38525 * 120.27096 * 359.74534 * 19 18 17 22 22 C 1.37888 * 120.13867 * 359.97438 * 21 19 18 23 23 H 0.97001 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99690 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.67624 * 180.29626 * 11 10 9 26 26 H 1.07997 * 120.01985 * 180.02562 * 14 12 11 27 27 H 1.07998 * 120.06593 * 0.02562 * 17 16 15 28 28 H 1.08002 * 119.93304 * 180.22994 * 18 17 16 29 29 H 1.08006 * 119.92812 * 179.97438 * 21 19 18 30 30 H 1.08002 * 120.07408 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7020 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2124 6 1 1.8834 2.3963 1.2125 7 6 2.0082 -1.2128 -0.0005 8 1 3.0576 -1.2304 -0.2555 9 6 1.3441 -2.4094 0.3311 10 6 0.2121 -2.3850 1.1680 11 6 -0.4301 -3.5464 1.4806 12 6 0.0251 -4.7650 0.9846 13 9 -0.6258 -5.9041 1.3072 14 6 1.1382 -4.8203 0.1641 15 6 1.8126 -3.6513 -0.1709 16 6 3.0032 -3.7011 -1.0465 17 6 3.0934 -2.8575 -2.1558 18 6 4.2083 -2.9052 -2.9658 19 6 5.2327 -3.7951 -2.6872 20 17 6.6304 -3.8537 -3.7152 21 6 5.1466 -4.6381 -1.5914 22 6 4.0394 -4.5958 -0.7706 23 1 -0.4850 0.8400 0.0004 24 1 -0.1502 -1.4457 1.5589 25 1 -1.3008 -3.5209 2.1191 26 1 1.4828 -5.7707 -0.2156 27 1 2.2935 -2.1662 -2.3763 28 1 4.2810 -2.2507 -3.8219 29 1 5.9484 -5.3301 -1.3796 30 1 3.9736 -5.2533 0.0837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001236088958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -25.117430 kcal Electronic energy + Delta-G solvation = -17980.928786 eV Core-core repulsion = 14873.229852 eV Total energy + Delta-G solvation = -3107.698934 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -47.57580 -38.99486 -37.29076 -36.01529 -33.85381 -31.65605 -30.66769 -29.52830 -28.15514 -25.27784 -22.67557 -22.26718 -21.01582 -20.05914 -17.64125 -16.85629 -16.05754 -15.57260 -14.98347 -14.60143 -14.44431 -14.27273 -14.09714 -13.13388 -13.07341 -13.03965 -12.74332 -12.24449 -12.09566 -11.53214 -11.36476 -11.27116 -11.12719 -11.01485 -10.83003 -10.52475 -10.39967 -10.08177 -9.65455 -9.39026 -8.55243 -8.37946 -7.59362 -7.41640 -7.02867 -4.59095 1.51505 1.83205 2.47980 2.48467 2.69838 2.95060 2.98165 3.01258 3.74004 4.18671 4.33475 5.23556 5.29582 5.37212 5.47219 5.82114 5.87771 5.94032 5.97269 6.08600 6.32430 6.46256 6.68358 6.73146 6.74178 6.88203 6.96245 7.15417 7.24012 7.32082 7.53346 7.66773 7.77142 7.95455 8.30225 8.55538 8.62702 9.87899 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.007346 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.238696 B = 3810.538482 C = 5805.387624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.782 5.782 2 C 0.075 3.925 3 Si 0.907 3.093 4 H -0.257 1.257 5 H -0.271 1.271 6 H -0.269 1.269 7 C -0.441 4.441 8 H 0.088 0.912 9 C 0.124 3.876 10 C -0.135 4.135 11 C -0.122 4.122 12 C -0.046 4.046 13 F -0.173 7.173 14 C -0.093 4.093 15 C -0.175 4.175 16 C 0.026 3.974 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.057 4.057 20 Cl -0.097 7.097 21 C -0.113 4.113 22 C -0.120 4.120 23 H 0.286 0.714 24 H 0.129 0.871 25 H 0.101 0.899 26 H 0.104 0.896 27 H 0.140 0.860 28 H 0.124 0.876 29 H 0.123 0.877 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.797 -1.841 -2.764 6.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.405 5.405 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.180 1.180 5 H -0.196 1.196 6 H -0.194 1.194 7 C -0.470 4.470 8 H 0.106 0.894 9 C 0.121 3.879 10 C -0.154 4.154 11 C -0.142 4.142 12 C -0.066 4.066 13 F -0.152 7.152 14 C -0.111 4.111 15 C -0.176 4.176 16 C 0.026 3.974 17 C -0.104 4.104 18 C -0.134 4.134 19 C -0.083 4.083 20 Cl -0.068 7.068 21 C -0.132 4.132 22 C -0.138 4.138 23 H 0.097 0.903 24 H 0.146 0.854 25 H 0.120 0.880 26 H 0.122 0.878 27 H 0.157 0.843 28 H 0.142 0.858 29 H 0.141 0.859 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 5.688 -1.712 -2.860 6.593 hybrid contribution 0.260 0.588 -0.037 0.644 sum 5.948 -1.124 -2.897 6.711 Atomic orbital electron populations 1.69782 1.07701 1.29914 1.33146 1.26006 0.94775 1.01666 0.92036 0.86238 0.81253 0.80490 0.78914 1.17988 1.19643 1.19439 1.19672 0.97840 0.90522 1.38920 0.89398 1.17575 0.90696 0.91187 0.88464 1.20962 0.98185 0.96587 0.99680 1.20521 1.00226 0.91997 1.01416 1.17175 0.98424 0.81422 1.09578 1.91295 1.81448 1.49912 1.92572 1.20521 0.95130 0.97267 0.98231 1.18291 0.99886 0.93246 1.06215 1.18839 0.92933 0.92849 0.92752 1.21429 0.97265 0.98564 0.93166 1.20926 0.93239 0.98545 1.00680 1.20829 0.90061 1.01925 0.95510 1.98316 1.42394 1.98106 1.67987 1.20795 0.98891 0.99232 0.94280 1.21265 0.92962 1.00058 0.99548 0.90312 0.85377 0.88039 0.87812 0.84252 0.85773 0.85940 0.85700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.02 10.96 55.55 0.61 -17.41 16 2 C 0.08 1.68 5.17 -17.31 -0.09 1.59 16 3 Si 0.91 17.02 29.59 -169.99 -5.03 11.99 16 4 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 7 C -0.44 -10.28 7.13 -37.93 -0.27 -10.55 16 8 H 0.09 2.03 6.60 -52.48 -0.35 1.68 16 9 C 0.12 2.94 5.56 -106.55 -0.59 2.35 16 10 C -0.14 -3.19 8.61 -39.30 -0.34 -3.53 16 11 C -0.12 -2.74 9.94 -39.90 -0.40 -3.14 16 12 C -0.05 -1.04 7.31 -39.16 -0.29 -1.33 16 13 F -0.17 -3.77 17.26 2.25 0.04 -3.73 16 14 C -0.09 -2.00 9.48 -39.22 -0.37 -2.37 16 15 C -0.17 -3.86 5.52 -104.25 -0.58 -4.43 16 16 C 0.03 0.52 4.92 -104.90 -0.52 0.00 16 17 C -0.09 -1.61 7.99 -39.18 -0.31 -1.93 16 18 C -0.12 -1.90 9.81 -39.60 -0.39 -2.29 16 19 C -0.06 -0.91 6.33 -39.37 -0.25 -1.15 16 20 Cl -0.10 -1.35 28.95 -51.86 -1.50 -2.85 16 21 C -0.11 -1.77 9.81 -39.60 -0.39 -2.16 16 22 C -0.12 -2.07 9.52 -39.18 -0.37 -2.45 16 23 H 0.29 5.98 8.30 -40.82 -0.34 5.64 16 24 H 0.13 3.07 6.22 -52.49 -0.33 2.74 16 25 H 0.10 2.06 8.06 -52.48 -0.42 1.63 16 26 H 0.10 2.03 8.04 -52.49 -0.42 1.61 16 27 H 0.14 2.74 7.30 -52.49 -0.38 2.35 16 28 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 29 H 0.12 1.63 8.06 -52.48 -0.42 1.20 16 30 H 0.13 2.00 8.04 -52.49 -0.42 1.58 16 LS Contribution 283.85 15.07 4.28 4.28 Total: -1.00 -23.92 283.85 -9.06 -32.98 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -2.30 Total: 6.13 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: -5.15 Total: -31.38 kcal Atomic # 7 Polarization: -18.02 SS G_CDS: 0.61 Total: -17.41 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.04 Total: -3.73 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -1.50 Total: -2.85 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -23.92 -9.06 -32.98 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.863 kcal (2) G-P(sol) polarization free energy of solvation -23.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds