Wall clock time and date at job start Mon Mar 30 2020 02:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30808 * 1 3 3 Si 1.86797 * 119.99994 * 2 1 4 4 H 1.48495 * 109.47084 * 180.02562 * 3 2 1 5 5 H 1.48495 * 109.47085 * 300.00367 * 3 2 1 6 6 H 1.48495 * 109.47094 * 60.00281 * 3 2 1 7 7 C 1.40037 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99908 * 164.18302 * 7 2 1 9 9 C 1.40820 * 120.00182 * 344.19138 * 7 2 1 10 10 C 1.40795 * 120.29528 * 333.54942 * 9 7 2 11 11 C 1.36349 * 120.01337 * 179.70472 * 10 9 7 12 12 C 1.39216 * 120.65763 * 0.28075 * 11 10 9 13 13 F 1.35101 * 119.69719 * 179.97438 * 12 11 10 14 14 C 1.38392 * 120.60883 * 359.97438 * 12 11 10 15 15 C 1.39058 * 119.95856 * 0.02562 * 14 12 11 16 16 C 1.47867 * 120.32094 * 179.97438 * 15 14 12 17 17 C 1.39659 * 120.13174 * 129.72569 * 16 15 14 18 18 C 1.37895 * 119.86272 * 179.76749 * 17 16 15 19 19 C 1.38523 * 120.13320 * 0.51099 * 18 17 16 20 20 Cl 1.73600 * 119.86678 * 179.75998 * 19 18 17 21 21 C 1.38525 * 120.27096 * 359.74534 * 19 18 17 22 22 C 1.37888 * 120.13867 * 359.97438 * 21 19 18 23 23 H 0.97001 * 120.00217 * 359.97438 * 1 2 3 24 24 H 1.07997 * 119.99690 * 359.97438 * 10 9 7 25 25 H 1.08003 * 119.67624 * 180.29626 * 11 10 9 26 26 H 1.07997 * 120.01985 * 180.02562 * 14 12 11 27 27 H 1.07998 * 120.06593 * 0.02562 * 17 16 15 28 28 H 1.08002 * 119.93304 * 180.22994 * 18 17 16 29 29 H 1.08006 * 119.92812 * 179.97438 * 21 19 18 30 30 H 1.08002 * 120.07408 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3081 0.0000 0.0000 3 14 2.2421 1.6177 0.0000 4 1 3.7020 1.3464 -0.0006 5 1 1.8832 2.3964 -1.2124 6 1 1.8834 2.3963 1.2125 7 6 2.0082 -1.2128 -0.0005 8 1 3.0576 -1.2304 -0.2555 9 6 1.3441 -2.4094 0.3311 10 6 0.2121 -2.3850 1.1680 11 6 -0.4301 -3.5464 1.4806 12 6 0.0251 -4.7650 0.9846 13 9 -0.6258 -5.9041 1.3072 14 6 1.1382 -4.8203 0.1641 15 6 1.8126 -3.6513 -0.1709 16 6 3.0032 -3.7011 -1.0465 17 6 3.0934 -2.8575 -2.1558 18 6 4.2083 -2.9052 -2.9658 19 6 5.2327 -3.7951 -2.6872 20 17 6.6304 -3.8537 -3.7152 21 6 5.1466 -4.6381 -1.5914 22 6 4.0394 -4.5958 -0.7706 23 1 -0.4850 0.8400 0.0004 24 1 -0.1502 -1.4457 1.5589 25 1 -1.3008 -3.5209 2.1191 26 1 1.4828 -5.7707 -0.2156 27 1 2.2935 -2.1662 -2.3763 28 1 4.2810 -2.2507 -3.8219 29 1 5.9484 -5.3301 -1.3796 30 1 3.9736 -5.2533 0.0837 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236088958.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:44 Heat of formation + Delta-G solvation = -32.842979 kcal Electronic energy + Delta-G solvation = -17981.263791 eV Core-core repulsion = 14873.229852 eV Total energy + Delta-G solvation = -3108.033939 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.32357 -40.45747 -38.86108 -37.25916 -35.56517 -33.20322 -32.05749 -31.21702 -29.70852 -27.00237 -24.20166 -23.69543 -22.67250 -21.62871 -19.35543 -18.37957 -17.54899 -17.22275 -16.57760 -16.11804 -16.08610 -15.85465 -15.64860 -14.66361 -14.42008 -14.38137 -14.29960 -13.88463 -13.77122 -13.17388 -12.85872 -12.78186 -12.57674 -12.40529 -12.21052 -12.18595 -11.72213 -11.64937 -11.33117 -11.07897 -9.92384 -9.87230 -9.31250 -9.04166 -8.70247 -6.35446 0.08674 0.49585 0.77376 1.01854 1.23693 1.40656 1.46105 1.53969 2.17672 2.58694 2.83051 3.55978 3.84083 4.01289 4.06650 4.15966 4.27423 4.47491 4.55632 4.61568 4.89428 4.99456 5.08083 5.14207 5.24544 5.30305 5.37589 5.53348 5.67017 5.78504 5.88807 5.99909 6.05664 6.22190 6.54816 6.81461 6.87806 8.22435 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.012631 B = 0.007346 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2216.238696 B = 3810.538482 C = 5805.387624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.042 3.958 3 Si 0.971 3.029 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.265 1.265 7 C -0.457 4.457 8 H 0.085 0.915 9 C 0.098 3.902 10 C -0.155 4.155 11 C -0.127 4.127 12 C -0.060 4.060 13 F -0.170 7.170 14 C -0.096 4.096 15 C -0.173 4.173 16 C -0.002 4.002 17 C -0.097 4.097 18 C -0.114 4.114 19 C -0.055 4.055 20 Cl -0.073 7.073 21 C -0.106 4.106 22 C -0.118 4.118 23 H 0.293 0.707 24 H 0.118 0.882 25 H 0.117 0.883 26 H 0.124 0.876 27 H 0.121 0.879 28 H 0.143 0.857 29 H 0.152 0.848 30 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.723 -2.044 -3.555 8.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.435 5.435 2 C -0.176 4.176 3 Si 0.792 3.208 4 H -0.182 1.182 5 H -0.190 1.190 6 H -0.189 1.189 7 C -0.485 4.485 8 H 0.103 0.897 9 C 0.095 3.905 10 C -0.175 4.175 11 C -0.146 4.146 12 C -0.080 4.080 13 F -0.150 7.150 14 C -0.115 4.115 15 C -0.175 4.175 16 C -0.002 4.002 17 C -0.115 4.115 18 C -0.132 4.132 19 C -0.081 4.081 20 Cl -0.044 7.044 21 C -0.125 4.125 22 C -0.136 4.136 23 H 0.104 0.896 24 H 0.136 0.864 25 H 0.135 0.865 26 H 0.142 0.858 27 H 0.139 0.861 28 H 0.161 0.839 29 H 0.170 0.830 30 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.611 -1.929 -3.654 8.660 hybrid contribution -0.252 0.566 0.121 0.632 sum 7.358 -1.363 -3.532 8.275 Atomic orbital electron populations 1.69818 1.08904 1.31101 1.33661 1.26700 0.95349 1.04249 0.91253 0.85285 0.79691 0.76682 0.79096 1.18164 1.18969 1.18946 1.19749 0.97724 0.91166 1.39837 0.89741 1.17915 0.91231 0.92353 0.88986 1.20922 0.99147 0.96581 1.00822 1.20673 1.00606 0.91790 1.01509 1.17328 0.98959 0.81508 1.10192 1.91292 1.81435 1.49626 1.92608 1.20752 0.94738 0.98083 0.97882 1.18591 1.00471 0.92747 1.05642 1.18850 0.93209 0.94818 0.93307 1.21290 0.97832 0.98512 0.93863 1.21075 0.92569 0.98854 1.00723 1.20979 0.90439 1.01097 0.95598 1.98330 1.40891 1.97985 1.67234 1.21082 0.98843 0.99151 0.93402 1.21385 0.92753 0.99359 1.00141 0.89582 0.86448 0.86515 0.85819 0.86145 0.83892 0.82994 0.84561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.16 10.96 21.84 0.24 -37.92 16 2 C 0.04 1.89 5.17 85.28 0.44 2.33 16 3 Si 0.97 34.82 29.59 68.60 2.03 36.85 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 5 H -0.26 -9.16 7.11 99.48 0.71 -8.45 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.46 -21.73 7.13 23.34 0.17 -21.56 16 8 H 0.08 3.97 6.60 -2.91 -0.02 3.95 16 9 C 0.10 4.79 5.56 -21.11 -0.12 4.67 16 10 C -0.16 -7.57 8.61 22.45 0.19 -7.38 16 11 C -0.13 -5.78 9.94 22.06 0.22 -5.56 16 12 C -0.06 -2.71 7.31 22.54 0.16 -2.54 16 13 F -0.17 -7.34 17.26 44.97 0.78 -6.57 16 14 C -0.10 -4.12 9.48 22.50 0.21 -3.91 16 15 C -0.17 -7.72 5.52 -19.62 -0.11 -7.82 16 16 C 0.00 -0.06 4.92 -20.04 -0.10 -0.16 16 17 C -0.10 -3.60 7.99 22.53 0.18 -3.42 16 18 C -0.11 -3.56 9.81 22.26 0.22 -3.34 16 19 C -0.05 -1.58 6.33 22.41 0.14 -1.44 16 20 Cl -0.07 -1.80 28.95 -2.72 -0.08 -1.88 16 21 C -0.11 -3.00 9.81 22.26 0.22 -2.79 16 22 C -0.12 -3.87 9.52 22.53 0.21 -3.65 16 23 H 0.29 12.45 8.30 -92.71 -0.77 11.68 16 24 H 0.12 5.87 6.22 -2.91 -0.02 5.85 16 25 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 26 H 0.12 4.71 8.04 -2.91 -0.02 4.69 16 27 H 0.12 4.88 7.30 -2.91 -0.02 4.86 16 28 H 0.14 3.84 8.06 -2.91 -0.02 3.82 16 29 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 30 H 0.14 4.08 8.04 -2.91 -0.02 4.06 16 Total: -1.00 -50.74 283.85 6.19 -44.55 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: 1.18 Total: 21.54 kcal Atomic # 6 Polarization: -58.63 SS G_CDS: 2.05 Total: -56.58 kcal Atomic # 7 Polarization: -38.16 SS G_CDS: 0.24 Total: -37.92 kcal Atomic # 9 Polarization: -7.34 SS G_CDS: 0.78 Total: -6.57 kcal Atomic # 14 Polarization: 34.82 SS G_CDS: 2.03 Total: 36.85 kcal Atomic # 17 Polarization: -1.80 SS G_CDS: -0.08 Total: -1.88 kcal Total: -50.74 6.19 -44.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236088958.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.711 kcal (2) G-P(sol) polarization free energy of solvation -50.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds