Wall clock time and date at job start Mon Mar 30 2020 02:01:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30778 * 1 3 3 Si 1.86803 * 120.00217 * 2 1 4 4 H 1.48498 * 109.46801 * 275.37457 * 3 2 1 5 5 H 1.48499 * 109.46725 * 35.37719 * 3 2 1 6 6 H 1.48496 * 109.47169 * 155.37442 * 3 2 1 7 7 C 1.40057 * 119.99806 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00424 * 342.44291 * 7 2 1 9 9 C 1.40882 * 119.99946 * 162.44093 * 7 2 1 10 10 C 1.40724 * 120.31492 * 329.50488 * 9 7 2 11 11 C 1.37635 * 119.84167 * 180.29422 * 10 9 7 12 12 F 1.35094 * 119.74576 * 179.72421 * 11 10 9 13 13 C 1.39193 * 120.50495 * 359.69797 * 11 10 9 14 14 C 1.38011 * 120.64905 * 0.05028 * 13 11 10 15 15 C 1.39152 * 120.13740 * 359.96785 * 14 13 11 16 16 C 1.47832 * 120.25310 * 179.97438 * 15 14 13 17 17 C 1.39675 * 120.13994 * 310.00896 * 16 15 14 18 18 C 1.37887 * 119.86378 * 179.97438 * 17 16 15 19 19 C 1.38536 * 120.13517 * 0.25011 * 18 17 16 20 20 Cl 1.73603 * 119.86055 * 179.74761 * 19 18 17 21 21 C 1.38530 * 120.27403 * 359.48908 * 19 18 17 22 22 C 1.37885 * 120.13448 * 0.51224 * 21 19 18 23 23 H 0.97003 * 119.99998 * 0.02562 * 1 2 3 24 24 H 1.07993 * 120.07434 * 359.97438 * 10 9 7 25 25 H 1.08001 * 119.67497 * 180.02562 * 13 11 10 26 26 H 1.08004 * 119.92967 * 179.97438 * 14 13 11 27 27 H 1.07997 * 120.06930 * 359.97438 * 17 16 15 28 28 H 1.07996 * 119.93246 * 179.97438 * 18 17 16 29 29 H 1.07998 * 119.93206 * 180.25820 * 21 19 18 30 30 H 1.08004 * 120.06932 * 179.76388 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3078 0.0000 0.0000 3 14 2.2419 1.6177 0.0000 4 1 2.3758 2.1119 -1.3939 5 1 1.5007 2.6171 0.8106 6 1 3.5915 1.4100 0.5834 7 6 2.0080 -1.2129 0.0005 8 1 1.5058 -2.1264 0.2831 9 6 3.3676 -1.2416 -0.3675 10 6 3.8709 -0.3147 -1.2992 11 6 5.1995 -0.3554 -1.6563 12 9 5.6794 0.5317 -2.5551 13 6 6.0525 -1.3032 -1.0982 14 6 5.5819 -2.2185 -0.1787 15 6 4.2434 -2.2019 0.2014 16 6 3.7365 -3.1815 1.1856 17 6 4.0030 -4.5428 1.0214 18 6 3.5279 -5.4515 1.9432 19 6 2.7831 -5.0174 3.0276 20 17 2.1827 -6.1684 4.1803 21 6 2.5199 -3.6681 3.1989 22 6 2.9895 -2.7497 2.2840 23 1 -0.4850 0.8401 -0.0004 24 1 3.2151 0.4233 -1.7367 25 1 7.0928 -1.3227 -1.3878 26 1 6.2540 -2.9491 0.2467 27 1 4.5801 -4.8828 0.1743 28 1 3.7330 -6.5043 1.8171 29 1 1.9422 -3.3354 4.0486 30 1 2.7805 -1.6984 2.4165 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001236091837.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:01:46 Heat of formation + Delta-G solvation = -33.303846 kcal Electronic energy + Delta-G solvation = -18063.063059 eV Core-core repulsion = 14955.009136 eV Total energy + Delta-G solvation = -3108.053923 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 276.041 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.74078 -40.52090 -38.93252 -37.25513 -35.63873 -33.02271 -32.56390 -31.78106 -29.38960 -27.25148 -24.22633 -23.65373 -22.93112 -21.60366 -19.64834 -18.31142 -17.99202 -16.97975 -16.84182 -16.57668 -16.36131 -15.94268 -15.49793 -14.98373 -14.74013 -14.35432 -14.31704 -13.96244 -13.73435 -13.56588 -13.25249 -12.79451 -12.57091 -12.37523 -12.32538 -12.03279 -11.73356 -11.68591 -11.62862 -11.10172 -9.88876 -9.81498 -9.65595 -8.99500 -8.93255 -6.56387 0.01093 0.50715 0.65715 0.76543 1.23060 1.24127 1.32511 1.41761 2.03945 2.44111 2.80968 3.33173 3.61694 4.01145 4.03116 4.07303 4.17504 4.39975 4.53918 4.60608 4.68754 4.86016 4.87158 5.13928 5.16283 5.22147 5.38127 5.49749 5.56712 5.65056 5.66589 5.91636 6.00555 6.13439 6.28844 6.59777 6.70832 8.06054 Molecular weight = 276.04amu Principal moments of inertia in cm(-1) A = 0.019276 B = 0.006200 C = 0.004915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.215360 B = 4515.230607 C = 5694.973592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.059 3.941 3 Si 0.946 3.054 4 H -0.269 1.269 5 H -0.272 1.272 6 H -0.252 1.252 7 C -0.447 4.447 8 H 0.076 0.924 9 C 0.110 3.890 10 C -0.291 4.291 11 C 0.121 3.879 12 F -0.160 7.160 13 C -0.262 4.262 14 C -0.031 4.031 15 C -0.175 4.175 16 C -0.007 4.007 17 C -0.112 4.112 18 C -0.108 4.108 19 C -0.054 4.054 20 Cl -0.075 7.075 21 C -0.118 4.118 22 C -0.096 4.096 23 H 0.297 0.703 24 H 0.103 0.897 25 H 0.140 0.860 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.154 0.846 29 H 0.137 0.863 30 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.578 -6.447 4.665 10.325 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.159 4.159 3 Si 0.771 3.229 4 H -0.195 1.195 5 H -0.198 1.198 6 H -0.176 1.176 7 C -0.476 4.476 8 H 0.094 0.906 9 C 0.107 3.893 10 C -0.311 4.311 11 C 0.102 3.898 12 F -0.138 7.138 13 C -0.282 4.282 14 C -0.049 4.049 15 C -0.177 4.177 16 C -0.007 4.007 17 C -0.130 4.130 18 C -0.127 4.127 19 C -0.080 4.080 20 Cl -0.046 7.046 21 C -0.136 4.136 22 C -0.114 4.114 23 H 0.108 0.892 24 H 0.120 0.880 25 H 0.158 0.842 26 H 0.164 0.836 27 H 0.164 0.836 28 H 0.172 0.828 29 H 0.155 0.845 30 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 6.231 -6.426 4.758 10.137 hybrid contribution -0.353 1.149 -0.312 1.242 sum 5.878 -5.277 4.446 9.065 Atomic orbital electron populations 1.69673 1.08917 1.31713 1.34669 1.26678 0.95136 1.03532 0.90559 0.85750 0.80153 0.77850 0.79186 1.19529 1.19767 1.17574 1.19355 0.93300 0.95695 1.39201 0.90623 1.17528 0.92784 0.90052 0.88977 1.20999 0.94758 1.07931 1.07378 1.17843 0.92593 0.89559 0.89768 1.91369 1.88874 1.67471 1.66132 1.20668 0.99983 1.01026 1.06477 1.20915 0.93800 0.96384 0.93838 1.18896 0.93657 1.02291 1.02810 1.18863 0.95796 0.93035 0.93007 1.21428 1.00851 0.91138 0.99604 1.21118 0.97589 1.01118 0.92836 1.21013 1.02580 0.90143 0.94282 1.98330 1.87169 1.59717 1.59391 1.21045 1.00934 0.91239 1.00410 1.21297 0.96821 0.99799 0.93521 0.89238 0.87962 0.84199 0.83581 0.83597 0.82827 0.84478 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.18 13.93 21.85 0.30 -41.88 16 2 C 0.06 2.95 5.41 85.29 0.46 3.41 16 3 Si 0.95 41.11 24.52 68.60 1.68 42.79 16 4 H -0.27 -11.65 6.72 99.48 0.67 -10.98 16 5 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 6 H -0.25 -11.22 6.85 99.48 0.68 -10.54 16 7 C -0.45 -22.68 7.51 23.36 0.18 -22.51 16 8 H 0.08 4.13 7.03 -2.91 -0.02 4.11 16 9 C 0.11 5.17 5.09 -21.12 -0.11 5.06 16 10 C -0.29 -13.55 7.11 22.73 0.16 -13.39 16 11 C 0.12 5.14 7.28 22.36 0.16 5.30 16 12 F -0.16 -6.53 17.26 44.97 0.78 -5.76 16 13 C -0.26 -9.54 10.01 22.45 0.22 -9.32 16 14 C -0.03 -1.10 9.49 22.44 0.21 -0.89 16 15 C -0.18 -7.15 5.52 -19.62 -0.11 -7.25 16 16 C -0.01 -0.25 4.92 -20.04 -0.10 -0.35 16 17 C -0.11 -3.41 9.52 22.53 0.21 -3.19 16 18 C -0.11 -2.96 9.81 22.26 0.22 -2.74 16 19 C -0.05 -1.57 6.33 22.41 0.14 -1.43 16 20 Cl -0.07 -1.89 28.95 -2.72 -0.08 -1.97 16 21 C -0.12 -3.80 9.81 22.26 0.22 -3.58 16 22 C -0.10 -3.59 8.09 22.53 0.18 -3.40 16 23 H 0.30 13.70 8.30 -92.71 -0.77 12.93 16 24 H 0.10 4.91 4.78 -2.91 -0.01 4.89 16 25 H 0.14 4.22 8.06 -2.91 -0.02 4.20 16 26 H 0.15 4.02 8.04 -2.91 -0.02 4.00 16 27 H 0.15 3.78 8.04 -2.91 -0.02 3.76 16 28 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 29 H 0.14 3.97 8.06 -2.91 -0.02 3.94 16 30 H 0.12 4.77 7.33 -2.91 -0.02 4.75 16 Total: -1.00 -52.95 278.92 5.86 -47.09 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.11 Total: 14.02 kcal Atomic # 6 Polarization: -56.35 SS G_CDS: 2.06 Total: -54.29 kcal Atomic # 7 Polarization: -42.18 SS G_CDS: 0.30 Total: -41.88 kcal Atomic # 9 Polarization: -6.53 SS G_CDS: 0.78 Total: -5.76 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 1.68 Total: 42.79 kcal Atomic # 17 Polarization: -1.89 SS G_CDS: -0.08 Total: -1.97 kcal Total: -52.95 5.86 -47.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001236091837.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.786 kcal (2) G-P(sol) polarization free energy of solvation -52.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds